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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 1 Jan 2015 10:04:20 -0600
Subject: [Microscopy] Administrivia: Happy New Year 2015

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Happy New Year Colleagues;

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 2 Jan 2015 18:33:07 -0600
Subject: [Microscopy] viaWWW:Offline TIA viewer for windows

Contents Retrieved from Microscopy Listserver Archives
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X-from: ravi.thakkar369-at-gmail.com


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Title-Subject: [Filtered] Offline TIA viewer for windows.

Message: How to see .emi and .ser file on windows.?
Is there any offline TIA viewer for windows available.?

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From: colijn.1-at-osu.edu
Date: Fri, 2 Jan 2015 19:41:32 -0600
Subject: [Microscopy] Re: viaWWW:Offline TIA viewer for windows

Contents Retrieved from Microscopy Listserver Archives
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Hi Ravi,

This won't help entirely, but ImageJ has a plugin which can open the
.SER files. You need to be sure that you point to the correct file
which contains the image. Most of the experimental information is
stored in the .EMI file.

The FEI website has a link to an off-line version of ESVision
(http://www.fei.com/service-support/es-vision/) which is the original
version of TIA. You may be able to run it and analyze the data
directly. (I've not tested it.)

Good luck,
Henk


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--

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*C*enter for *E*lectron *M*icroscopy & *A*nalysi*S*

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From: guosheng.liu-at-usask.ca
Date: Mon, 5 Jan 2015 14:39:37 -0600
Subject: [Microscopy] The data screen/monitor turns black in our Philips CM10 TEM---need

Contents Retrieved from Microscopy Listserver Archives
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Happy new year EM community!

When coming back from holidays, I found our CM10's monitor display was completely dark :(
A small part of data display on a corner of the screen has been disappeared (fainted) for a while but the machine was operational without any problem. Now the whole screen was black out. The Data Dim and Panel Dim knobs were usually set at low or off during non-usage times. Other panel lights are all normal.

It seems like a small part (bulb or circuit board?) wearing out. Is there any simple way to check or order/replay the part?

Your expertise on this is much appreciated. Thanks you in advance.

Guosheng Liu
University of Saskatchewan
Canada


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6, 36 -- Date: Mon, 05 Jan 2015 20:39:21 +0000
6, 36 -- From: "Liu, Guosheng" {guosheng.liu-at-usask.ca}
6, 36 -- Subject: The data screen/monitor turns black in our Philips CM10 TEM---need
6, 36 -- help.
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From: js51-at-princeton.edu
Date: Mon, 5 Jan 2015 15:13:02 -0600
Subject: [Microscopy] The data screen/monitor turns black in our Philips CM10 TEM---need

Contents Retrieved from Microscopy Listserver Archives
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Hello,

One thing you can try is to shine a bright light up in the upper left corner of the Data Monitor and see if the characters show up. The Data monitor intensity circuitry is a little strange. When you adjust the Data Dim knob it controls the intensity of a bulb on a circuit board behind the panel. There is a light absorbing diode that is next to the bulb which measures the intensity and adjust the circuitry that controls the Data brightness. If this bulb is burned out, then the monitor goes black.

Good Luck,
John


-----Original Message-----
X-from: guosheng.liu-at-usask.ca [mailto:guosheng.liu-at-usask.ca]
Sent: Monday, January 05, 2015 3:58 PM
To: John J. Schreiber

Happy new year EM community!

When coming back from holidays, I found our CM10's monitor display was completely dark :( A small part of data display on a corner of the screen has been disappeared (fainted) for a while but the machine was operational without any problem. Now the whole screen was black out. The Data Dim and Panel Dim knobs were usually set at low or off during non-usage times. Other panel lights are all normal.

It seems like a small part (bulb or circuit board?) wearing out. Is there any simple way to check or order/replay the part?

Your expertise on this is much appreciated. Thanks you in advance.

Guosheng Liu
University of Saskatchewan
Canada


==============================Original Headers==============================
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17, 41 -- From js51-at-princeton.edu Mon Jan 5 15:13:00 2015
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17, 41 -- From: "John J. Schreiber" {js51-at-princeton.edu}
17, 41 -- To: "guosheng.liu-at-usask.ca" {guosheng.liu-at-usask.ca}
17, 41 -- CC: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
17, 41 -- Subject: RE: [Microscopy] The data screen/monitor turns black in our Philips
17, 41 -- CM10 TEM---need
17, 41 -- Thread-Topic: [Microscopy] The data screen/monitor turns black in our
17, 41 -- Philips CM10 TEM---need
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 5 Jan 2015 20:04:40 -0600
Subject: [Microscopy] viaWWW:CSU Summer School on Electron Diffraction

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X-from: roy.geiss-at-colostate.edu

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Email: roy.geiss-at-colostate.edu
Name: Roy H. Geiss

Organization: Colorado State University

Title-Subject: [Filtered] Summer School on Electron Diffraction

Message: We are happy to announce the second edition of the CIF Summer School, which this year will
feature a 3-day workshop on electron diffraction methods for materials analysis (May 19-21, 2015).
Registration will open mid-January to both CSU and non-CSU students and researchers. For more
information, go to: http://cif.colostate.edu/cif-summer-school/.


Thank you.
Regards,
Karolien


Karolien Denef
Associate Director/Research Scientist
Central Instrument Facility (CIF)
Department of Chemistry - Colorado State University
Fort Collins, CO 80523-1872
970-491- 3832 (o); 970-556-4846 (cell)
http://cif.colostate.edu/


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 5 Jan 2015 20:05:27 -0600
Subject: [Microscopy] viaWWW:Job Opportunity- Leidos Biomed

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X-from: jennifer.korrell-at-nih.gov

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Email: jennifer.korrell-at-nih.gov
Name: Jennifer Korrell

Organization: Leidos Biomedical Research, Inc.

Title-Subject: [Filtered] Job Opportunity- Leidos Biomed

Message: Leidos Biomedical Research Inc. is seeking a dedicated, driven Research Associate II to
join their Electron Microscopy Laboratory. This position is located in Frederick, MD.

Below is a link that will take you directly to the job description on our website. If interested,
please apply using the "apply" button at the bottom of the page.

http://jobs.leidos.com/job/Frederick-Md-Research-Associate-II-611455-%28NCI%29-Job-MD-21701/237152900/


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From: bicarbaj-at-mtholyoke.edu
Date: Mon, 5 Jan 2015 21:02:20 -0600
Subject: [Microscopy] EM service contracts-Negotiating prices?

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Hello everyone,

I am in the early stages of my career as a facility director and was
wondering if you could lend some tips for negotiating service contract
prices.

Our facility has a TEM and SEM, both of which are under service
contracts with FEI. The increase in price has been pretty steady over
the years, i.e. ~$200 for the SEM and ~$500 for the TEM. This year,
however, the increase in price for the SEM contract is ~$1,300!! This
was even after the mutli-contract discount.

I did not expect such an increase this year so my budget was not
adjusted accordingly. I would say that I was pretty unhappy with the
SEM service this past year. Despite contacting my field service
engineer multiple times, I never heard back or it took over a month to
hear back. We are also still having low vac problems that have
resulted in countless hours of down time. Should I mention these
points to my sales rep?

I'm new to the whole business side of science and I am wondering if
anyone has any suggestions. I wouldn't want to say something
wrong.....

Thank you in advance!

-Blanca

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From: oshel1pe-at-cmich.edu
Date: Wed, 7 Jan 2015 07:07:16 -0600
Subject: [Microscopy] Re: Ask-A-Microscopist: DIC light microscopy of 2 rubber compounds

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***************************************************************************************
Forwarded from "Ask a Microscopist"
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not a member the listserver, and
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} realname - Ondrej Kotecky
} Email - ondrej.kotecky-at-gmail.com
} EDUCATION - Graduate College
} LOCATION - Brno, Czech Republic
} QUESTION - Hello,
}
} i had rubber sample made from two rubber components/compounds. The interface between the components was not visible in reflected light on a guillotine cut, and it was not visible on a polished section. (Polished similarly as a metallurgical sample. Polishing resulted in a nearly plane and slightly inclined surface.) Neither dark-field nor polarized-light could resolve the interface -- one colour across the whole sample.
}
} } From the above, i was assuming that there is no step in between the components (dark-field) and that the compounds give the same reflection in polarized light. So DIC should not show the interface. I tried anyway and was surprised to see two different colours on both sides of the interface.
}
} I'd like to understand why DIC shows a different colour. The literature did not help. I must be missing something. Could you help to explain why DIC results in two homogeneous regions with a distinct colour contrast?
}
} Many thanks,
} Ondrej Kotecky


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 7 Jan 2015 07:55:44 -0600
Subject: [Microscopy] viaWWW: never used filaments genuine spare part JEM 100SX

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X-from: guy.vermeildeconchard-at-fr.netgrs.com

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Email: guy.vermeildeconchard-at-fr.netgrs.com
Name: Guy VERMEIL DE CONCHARD

Organization: BIOLOGIE SERVIER COMPANY

Title-Subject: [Filtered] genuine spare part JEM 100SX

Message: To be given 8 never used filaments type K (tungsten) Jeol part No. 804500070 - type
MA113008(03) for Jeol transmission microscope type 100SX.

please, contact by mail.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 7 Jan 2015 07:56:32 -0600
Subject: [Microscopy] viaWWW:Recycling old EM negatives

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X-from: Gregory.Hendricks-at-umassmed.edu

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Email: Gregory.Hendricks-at-umassmed.edu
Name: Greg Hendricks

Organization: University of Massachusetts Medical School

Title-Subject: [Filtered] Recycling old EM negatives

Message: A colleague of mine found several boxes of old (from her dissertation) EM negatives while
cleaning out her basement. She contacted me and asked if we could recycle them. It never crossed
my mind that these could be recycled but apparently there are hundreds of them and it does seem kind
of a waste to just through them out. Does anyone out there no of/or if Old EM negatives (Kodak
4489) can be recycled?
Happy New year to you all
Greg

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From: ben.micklem-at-pharm.ox.ac.uk
Date: Wed, 7 Jan 2015 08:13:03 -0600
Subject: [Microscopy] Re: viaWWW:Recycling old EM negatives

Contents Retrieved from Microscopy Listserver Archives
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X-from a quick google, Kodak have a document called KES-60, which has a list
of scrap film buyers, the most recent version I could find in Google was
this:

http://www.kodak.co.uk/ek/uploadedFiles/Content/About_Kodak/Global_Sustaina
bility/Health,_Safety_and_Environment/HSE_Support_Center/Product_End_of_Lif
e_Management/KES-60_Scrap_Film_Buyers.pdf


Ben



On 07/01/2015 14:04, "microscopylistserver-noreply-at-microscopy.com"
{microscopylistserver-noreply-at-microscopy.com} wrote:

}
}
}
} --------------------------------------------------------------------------
} --
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America



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From: bicarbaj-at-mtholyoke.edu
Date: Wed, 7 Jan 2015 11:45:33 -0600
Subject: [Microscopy] EM service contracts-Negotiating prices?--update

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Hello everyone,

Thank you very much for all the helpful advice and kind words. I
learned about many alternatives for service that I will definitely be
considering in the future.

I found out what the issue was with FEI. Apparently, we were being
given an unusual 5% multi-tool discount which was reduced to 2% this
year. However, we were not given notice of this reduction last year
when we were preparing our budget (this happened before I started the
position).

FEI was kind enough to negotiate to a 3.5% discount for this year,
mostly because our budget was prepared with a 5% discount in mind.

More good news: I contacted our service engineer about the continued
low vac problem. His response this time was prompt and he is coming
out to inspect the instrument at the end of the week.

Before my post, I was not aware that the best plan of action was to
voice my concerns to the service manager when I found myself
dissatisfied with the service. Thank you for letting me know. Maybe
now I won't have issues with obtaining prompt replies.

Thank you,

Blanca

-----------------------------------------
Blanca Carbajal Gonzalez, M.S.
Director of Microscopy
Science Center
50 College St
Mount Holyoke College
Clapp Laboratory 123
Office: 413-538-3118
Cell: 559-905-7138
bicarbaj-at-mtholyoke.edu

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From: axelsson-at-acc.umu.se
Date: Wed, 7 Jan 2015 17:34:04 -0600
Subject: [Microscopy] viaWWW:Recycling old EM negatives

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

There are people around the world that recovers silver from both
unexposed film and negatives. Many have gathered together on the
http://goldrefiningforum.com/ forum. There you could probably find
someone close-by that can recover the silver from the films.
The process is also described on several places on the forum for anyone
interested.

/Göran

ben.micklem-at-pharm.ox.ac.uk skrev den 2015-01-07 15:13:
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} X-from a quick google, Kodak have a document called KES-60, which has a list
} of scrap film buyers, the most recent version I could find in Google was
} this:
}
} http://www.kodak.co.uk/ek/uploadedFiles/Content/About_Kodak/Global_Sustaina
} bility/Health,_Safety_and_Environment/HSE_Support_Center/Product_End_of_Lif
} e_Management/KES-60_Scrap_Film_Buyers.pdf
}
}
} Ben
}
}
}
} On 07/01/2015 14:04, "microscopylistserver-noreply-at-microscopy.com"
} {microscopylistserver-noreply-at-microscopy.com} wrote:
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} } Email: Gregory.Hendricks-at-umassmed.edu
} } Name: Greg Hendricks
} }
} } Organization: University of Massachusetts Medical School
} }
} } Title-Subject: [Filtered] Recycling old EM negatives
} }
} } Message: A colleague of mine found several boxes of old (from her
} } dissertation) EM negatives while
} } cleaning out her basement. She contacted me and asked if we could
} } recycle them. It never crossed
} } my mind that these could be recycled but apparently there are hundreds of
} } them and it does seem kind
} } of a waste to just through them out. Does anyone out there no of/or if
} } Old EM negatives (Kodak
} } 4489) can be recycled?
} } Happy New year to you all
} } Greg
} }
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 8 Jan 2015 06:54:37 -0600
Subject: [Microscopy] viaWWW:Compresser problem in RMC RFD-9010CR freeze fracture machine

Contents Retrieved from Microscopy Listserver Archives
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Email: leex3870-at-umn.edu
Name: Han

Organization: University of Minnesota

Title-Subject: [Filtered] Compresser problem in RMC RFD-9010CR freeze fracture machine

Message: Hello

I have a RMC RFD-9010CR freeze fracture machine and its compressor (Mitsubishi super line SP-KR) is
not working. I checked fuses in the mainboard, and none of them is blown. I'm wondering that
anyone had similar problem with RMC freeze fracture machine can give some advice so that I can start
with.
Thanks,
Han

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 8 Jan 2015 06:55:39 -0600
Subject: [Microscopy] viaWWW:AFM Training course 2015 - Portugal

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X-from: afmhelp-at-gmail.com

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Email: afmhelp-at-gmail.com
Name: Peter Eaton

Organization: UCIBIO-at-Requimte / University of Porto, Portugal

Title-Subject: [Filtered] AFM Training course 2015

Message: Dear All,
The 4th Porto Atomic Force Microscopy Training Workshop will run during Easter 2015, from the 30th
March to 2nd April in the historic city of Porto, Portugal. Following the successful courses that
ran in 2011, 2013 and 2014, the course will include several hours hands-on training in acquiring
images with the atomic force microscope as well as AFM data processing. Other topics covered in
lectures include AFM modes, AFM instrumentation, sample preparation, and applications. The course
will also feature advanced topics lectures from guest scientists in biology and materials science.
Those interested in attending are encouraged to register as soon as possible, as the course usually
fills quickly. More details can be found at http://afmhelp.com/course, and enquiries can be sent to
afmhelp-at-gmail.com.
Regards,
Dr. Peter Eaton

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From: jkrupp-at-deltacollege.edu
Date: Thu, 8 Jan 2015 12:42:57 -0600
Subject: [Microscopy] Curriculum suggestions

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You may recall that I asked the list about what to include in a bachelor's level EM curriculum.

I received many responses, mostly directly to me, and a few that were shared on the list.

I am still working on this project and want to thank everyone who has contributed. Keep those cards and letters coming, more ideas are always better.

I got several requests to post the replies to the list, but the page count is now up to 11 and I think that's too long to post. So, if you would like to receive a copy of the replies, send me a request and I will send a PDF to you. Fear not, I think I have sanitized the responses so you have nothing to fear from the thought police. If you sent a reply and do not wish to have it shared, let me know and I will take care of it.

Jon


--
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Applied Science, Business & Technology
San Joaquin Delta College
5151 Pacific Avenue
Stockton, CA 95207
jkrupp-at-deltacollege.edu
(209) 954-5284

Find us on Facebook at Electron Microscopy at SJ Delta College

https://www.facebook.com/pages/Electron-Microscopy-at-SJ-Delta-College/280975881938816

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 8 Jan 2015 18:19:10 -0600
Subject: [Microscopy] viaWWW:Post-doctorate or senior electron microscopist / Krakow, Poland

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Organization: Centre of Electron Microscopy for Materials Science, AGH University of Science and
Technology, Krakow, Poland

Title-Subject: [Filtered] Post-doctorate or senior electron microscopist

Message: The Faculty of Metals Engineering and Industrial Computer Sciences and International Centre
of Electron Microscopy for Materials Science (IC-EM) invite applications for an experienced
Post-Doctorate Scientist in materials science and/or physics to strengthen and further develop an
eleven people team.

The present research frame is focused on quantitative characterisation of micro/nanostructure and
properties of various materials, structure-property relationship as well as tailoring microstructure
for desired properties. Transmission electron microscopy (TEM) is the main investigation tool around
a probe Cs corrected Titan Cubed 60-300 with a ChemiSTEM, Merlin Gemini II SEM and comprehensive
preparation laboratory with FIB and NanoMill 1040. More details are given on the Centre website:
http://www.tem.agh.edu.pl

This offer aims at a person with a PhD degree in materials science or physics. Proven ability to
conduct academic research (mainly using TEM), ability to make clear oral and written presentations
as well as self-motivation are prerequisite. Ability to write publications in international
journals, fluent English (spoken and written) are expected. Teaching ability in English and in
Polish is required. Female scientists are encouraged to apply.

The successful candidate will take the responsibility for research within existing projects and is
expected to develop her/his own projects on a longer perspective based on national, international
and industry funding.

The call is open immediately and will be closed on 10th of February, 2015.
The University position will be open from 1st of March 2015 and secure for the next two years with a
possibility of further prolongation.

Please send your application (CV and publications list) together with the names of two referees
(phone, e-mail and website addresses) by e-mail to:

Prof. Dr. Aleksandra Czyrska-Filemonowicz
AGH University of Science and Technology, Krakow, Poland
Tel. +48 12 617 2929 or +48 12 617 2587 (secretary)
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 8 Jan 2015 18:20:13 -0600
Subject: [Microscopy] viaWWW:Cross-section Preparation of mesoporous silica

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Email: chilan.ngo-at-ucla.edu
Name: Chilan Ngo

Organization: UCLA Materials Science

Title-Subject: [Filtered] Cross-section Preparation

Message: Dear all,

I'm looking for input on preparing some very testy powder samples of mesoporous silica embedded with
small metal nanoparticles. The goal is to get cross-sectional HRTEM to show that the particles are
embedded into the walls of the silica, instead in the pores/surface. Imaging the material as powder
doesn't show any of the tubular bundles in the correct orientation (looking down the pores), so I've
tried cross sections.

FIB chewed up the material, so the next approach was to embed in epoxy and microtome slices. My
collaborator used a general procedure from the technical guide, 19:21:1.2 Araldite502:DDSA:BDMA with
powder mixed in, at 60C for 24h after degassing, in BEEM capsules. The epoxy slices (70-200nm) were
relatively soft, had a couple bubbles, and often split lengthwise during cutting. The admin of our
facility suggested that the polymerizarion was unfinished. Under our FEI Titan beam at both 80kV and
300kV, the slices crumpled & broke immediately at medium magnification (3800X) with a spread beam
(spot size 4), and including after exposure/pre-warming at low mag, which was ok.

Assuming that microtoming is the way to go, can anyone suggest modifications to the embedding
procedure to make the slices more robust? Or TEM tricks to prevent breaking? Or, what techniques
might be able to cross section powder better? The silica pores/channels (~10nm diameter) also
present a challenge because they swell under the beam, and being embedded makes the ~5nm nps harder
to find...

Thanks to anyone who read all that! Those of us on this projects are new at the microtome, so all
input is very appreciated.

-Chilan

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From: jkrupp-at-deltacollege.edu
Date: Thu, 8 Jan 2015 21:38:52 -0600
Subject: [Microscopy] Curriculum PDF

Contents Retrieved from Microscopy Listserver Archives
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If you asked for a PDF of the replies I got to my question about EM curriculum, sit tight.

The file is on my other computer and I won't get to it for about a week. Will send out when I can.

Jon

--
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Applied Science, Business & Technology
San Joaquin Delta College
5151 Pacific Avenue
Stockton, CA 95207
jkrupp-at-deltacollege.edu
(209) 954-5284

Find us on Facebook at Electron Microscopy at SJ Delta College

https://www.facebook.com/pages/Electron-Microscopy-at-SJ-Delta-College/280975881938816

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From: matthew.weyland-at-monash.edu
Date: Thu, 8 Jan 2015 23:03:07 -0600
Subject: [Microscopy] Re: viaWWW:Cross-section Preparation of mesoporous silica

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Hi Chilan,

I've looked at many specimens of mesoporous silica embedded with
nanoparticles in my time, as well as a fair few microtomed specimens -
and have a few suggestions;

1) Stop using TEM - use STEM instead, preferably some flavour of ADF
imaging as the contrast from the metal nanoparticles will be strong, and
there will be no phase contrast making interpretation harder.

Also both mesoporous silica and the embedding polymer undergo damage via
electron beam heating and/or electrostatic charging induced tearing. As
the total dose rate is much lower in STEM (and a moving probe means no
area is exposed for long) damage will be much less of a problem. Also
note this means high voltage means LESS damage for the silica - as the
inelastic cross section drops with increasing voltage. As such 300kV is
orders of magnitude more stable than 80kV for these materials.

2) Coat your sections with a monolayer of carbon after microtoming. As
heating/charging is the damage mechanism this will provide a conduction
path for removing charge and heat. (In some microtomed sections this
converts specimens from being unusable in STEM to perfectly stable).

3) To make it easier to see end on pores in the powder you should grind
the sample before dispersing it in alcohol - and sonicate it well. The
raw material tends to form in micelles that are 'sausage' shaped with
the pores along the long axis of the sausage. This is what makes it
unlikely to come across end on pores in an unground specimen.

4) Tilt! If you cant see end on pores when flat your microscope has a
double tilt stage - use it. Even better carry out tomography as you'll
be able to resolve internal/external and particle positions in the
reconstruction. Note that whatever your specimen prep technique only the
tilting approaches will allow you to say with any certainty where your
nanoparticles are in relation to the silica - all other imaging
techniques will be limited by projection.

Hope that helps,

Matthew

On 9/01/2015 11:39 AM, microscopylistserver-noreply-at-microscopy.com wrote:

} Organization: UCLA Materials Science
}
} Title-Subject: [Filtered] Cross-section Preparation
}
} Message: Dear all,
}
} I'm looking for input on preparing some very testy powder samples of
} mesoporous silica embedded with small metal nanoparticles. The goal
} is to get cross-sectional HRTEM to show that the particles are
} embedded into the walls of the silica, instead in the pores/surface.
} Imaging the material as powder doesn't show any of the tubular
} bundles in the correct orientation (looking down the pores), so I've
} tried cross sections.
}
} FIB chewed up the material, so the next approach was to embed in
} epoxy and microtome slices. My collaborator used a general procedure
} from the technical guide, 19:21:1.2 Araldite502:DDSA:BDMA with powder
} mixed in, at 60C for 24h after degassing, in BEEM capsules. The epoxy
} slices (70-200nm) were relatively soft, had a couple bubbles, and
} often split lengthwise during cutting. The admin of our facility
} suggested that the polymerizarion was unfinished. Under our FEI Titan
} beam at both 80kV and 300kV, the slices crumpled & broke immediately
} at medium magnification (3800X) with a spread beam (spot size 4), and
} including after exposure/pre-warming at low mag, which was ok.
}
} Assuming that microtoming is the way to go, can anyone suggest
} modifications to the embedding procedure to make the slices more
} robust? Or TEM tricks to prevent breaking? Or, what techniques might
} be able to cross section powder better? The silica pores/channels
} (~10nm diameter) also present a challenge because they swell under
} the beam, and being embedded makes the ~5nm nps harder to find...
}
} Thanks to anyone who read all that! Those of us on this projects are
} new at the microtome, so all input is very appreciated.
}
} -Chilan


--
Dr M.Weyland, Associate Professor & Titan Manager
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From: oshel1pe-at-cmich.edu
Date: Mon, 12 Jan 2015 15:53:12 -0600
Subject: [Microscopy] Ask-A-Microscopist: SEM service available in Brooklyn NY area for

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***************************************************************************************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
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Using the "reply" function in your email does *not* send your answer
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ealname - Francoise Marga
Email - fmarga-at-modernmeadow.com
ORGANIZATION - Modern Meadow
EDUCATION - Graduate College
LOCATION - Brooklyn, NY, USA
SUBJECT_OF_QUESTION - SEM in NYC
QUESTION - Hi,

Our company would like to look at our samples by SEM. We need to go up
x15,000 to visualize collagen fibers. As a business, we have trouble to
find a SEM accessible to a private company. Does anyone know a facility
or a private service in our area (Brooklyn, NY) that could help us.
Thanks for your help. Kind regards,

Francoise



==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 13 Jan 2015 19:27:08 -0600
Subject: [Microscopy] viaWWW:MSNO 2015 meeting

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Email: nxa157-at-case.edu
Name: Nanthawan Avishai

Organization: Microscope Society of NE Ohio (MSNO)

Title-Subject: [Filtered] MSNO 2015 meeting

Message: MSNO 2015 Winter Meeting

MSNO 2015 Winter Meeting - Wednesday, March 4th, 2015, 3:00 – 8:30 p.m.
at Cleveland Museum of Natural History (1 Wade Oval Drive, University Circle, Cleveland, OH 44106)

Lillian A. Kuri from Cleveland Foundation will give a lecture on "Cleveland’s Greater University
Circle Initiative" and John Hemsath - Retired Director of Theater Operations will give a lecture on
"The History of Playhouse Square"

Registration including dinner will be $20 for MSNO members, $25 for non-members and $5 for student
members, $10 for student non-members. Preregistration is available at
http://www.msneo.org/meetings.html, or registration and payment at the door will also be available
(additional 5$ for all). Preregistration is required so we can get a good head count.

Please see more detail at
https://www.facebook.com/MicroscopySociety/photos/pcb.631540963642067/631540420308788/?type=1&theater

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 14 Jan 2015 06:56:34 -0600
Subject: [Microscopy] viaWWW:Research Fellow in Scanning Transmission Electron Microscopy

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Email: laure.bourgeois-at-monash.edu
Name: Laure Bourgeois

Organization: Monash University

Title-Subject: [Filtered] Research Fellow in Scanning Transmission Electron Microscopy Imaging and
Simulations of Interfaces in Light Alloys

Message:
The following position is currently available:

Research Fellow in Scanning Transmission Electron Microscopy Imaging and Simulations of Interfaces
in Light Alloys

Department of Materials Engineering, Monash University, Australia

Application closing date: 15 February 2015


http://jobs.monash.edu.au/jobDetails.asp?sJobIDs=530367
or
http://users.monash.edu/~bourgeoi/Open-Positions.html


A/Prof. Laure Bourgeois
Associate Professor - Microscope Manager
Monash Centre for Electron Microscopy -- Department of Materials Engineering
Building 81, 10 Innovation Walk
Monash University, VIC 3800, Australia
Tel: +61-(0)3-9905-5368 -- Fax: +61-(0)3-9905-3600
www.mcem.monash.edu.au
users.monash.edu/~bourgeoi


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23, 18 -- Subject: viaWWW:Research Fellow in Scanning Transmission Electron Microscopy
23, 18 -- Imaging and Simulations of Interfaces in Light Alloys
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 14 Jan 2015 06:57:14 -0600
Subject: [Microscopy] viaWWW:CRESSINGTON 108 CARBON COATER

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Email: grottigni-at-areialab.com
Name: Rottigni V. Guglielmo

Organization: AREIA LABORATOIRES -NORMANDY - FRANCE

Title-Subject: [Filtered] CRESSINGTON 108 CARBON COATER

Message: Hi to all.

I use a Cressington 108 Carbon Coater to make carbon strata on polycarbonate filters, following ISO
13794 (the filters, after coating, are used to filter suspensions containing asbestos fibers), but _
while mantaining the same conditions (usually 4.5 V qnd three shots of " seconds each), the quantity
of carbon deposed vary very much, and randomly. Sometimes I obtain 20 nm, sometimes only 10.
Is there someone using the same Cressington Coater who may give me some advice qbout the best way to
obtain carbon films of constant thickness?

Thanks in advance

Guglielmo Rottigni
AREIA LABORATOIRES www.areialab.com
Bourgtheroulde-Infreville
Normandy
FRANCE

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From: lists-at-nexperion.net
Date: Wed, 14 Jan 2015 11:15:26 -0600
Subject: [Microscopy] Advanced Course on Cryo-Electron Tomography, Vienna, June 2015

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Colleagues,

The Electron Microscopy Facility of the Campus Science Support Facilities (Vienna, Austria) and Nex­pe­rion - Solutions for Electron Microscopy (Vienna, Austria) are jointly organising an international

Advanced Course on Cryo-Electron Tomography
Vienna, Austria, Europe
June 6–7, 2015: Optional Pre-Course
June 8–12, 2015: Main Course

for students, post-doctoral staff, scientists, and group leaders from academia and industry. While this course targets an advanced audience pre-existing knowledge in electron tomography, data processing and/or Cryo-TEM), a weekend pre-course will be offered for less experienced participants to catch-up.

The main part of the course will cover

Immersion freezing for cryo-electron tomography
Cryo-CLEM
Low-dose data collection with Seri­alEM
Processing of low-dose tilt series with IMOD
Modelling and interpretation of cryo-electron tomography data
Subto­mo­gram averaging with PEET

Instructors and Organisers

Dr. Thomas Heuser, Campus Science Support Facilities, Vienna, Austria
Dr. Johanna HÜÜg, University of Gothenburg, Sweden
Dr. David Mas­tronarde, University of Colorado, Boulder, United States
Dr. Rein­hard Rachel, University of Regensburg, Germany
Dr. Guenter Resch, Nex­pe­rion e.U. - Solutions for Electron Microscopy, Vienna, Austria

Sponsored Guest Lectures

Dr. Andreas Kas­ten­mßller, Gatan GmbH, Munich, Germany
Dr. Ruwin Pandithage, Leica Microsystems, Vienna, Austria

For details about on-site infrastructure, the registration procedure and fees, see

http://www.nexperion.net/cryotomo2015

We are looking forward to seeing you there, best regards,

Guenter
on behalf of all organizers

--
Dr. Guenter Resch
Nexperion e.U. - Solutions for Electron Microscopy - www.nexperion.net
Mattiellistrasse 3/17, 1040 Vienna, Austria - Phone +43 664 94 17 210
Registered at Commercial Court Vienna, FN 397677w - VAT Reg. ATU67962234


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7, 25 -- Subject: Advanced Course on Cryo-Electron Tomography, Vienna, June 2015
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From: zaluzec.microscopy.com-at-gmail.com
Date: Thu, 15 Jan 2015 19:06:25 -0600
Subject: [Microscopy] viaWWW:Feed back on SEM-EDS systems

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X-from: javaidqazi-at-kemet.com

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Email: javaidqazi-at-kemet.com
Name: Javaid Qazi

Organization: Kemet Electronics

Title-Subject: [Filtered] Feed back on SEM-EDS systems

Message: All,

I am planning to buy a SEM with EDS. I would like to get feedback from the group.

I am interested in knowing pros and cons between the two Hitachi SU3500 and JEOL IT300LV to decide
which one to get.

In terms of EDS which systems are better, any recommendation both in terms of detector size and
software usage.

The equipment will typically be used by 3-4 users who do have experience using the SEM-EDS.

I will take the feedback offline.

Thanks for your help.

Javaid


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From: g.esteban.fernandez-at-gmail.com
Date: Fri, 16 Jan 2015 00:50:12 -0600
Subject: [Microscopy] Changed dimensions of OSRAM mercury bulb 103 W/2?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi everyone,

I just ordered the same OSRAM 103 W/2 bulbs I've been using for years
in a Zeiss HBO 100 unit. The cathode (top) of all 3 bulbs that
arrived is too wide to fit into the HBO 100's clamp (bottom cathode is
OK). Comparing with the old bulb I ordered 9 months ago, the anode is
indeed wider now than before. Has anyone else received OSRAM 103 W/2
bulbs recently and were the dimensions OK? I got mine from
Bulbtronics.com. How about with the similar USHIO 103D?

Thanks,
Esteban

==============================Original Headers==============================
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3, 27 -- Subject: Changed dimensions of OSRAM mercury bulb 103 W/2?
3, 27 -- From: "G. Esteban Fernandez" {g.esteban.fernandez-at-gmail.com}
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From: Edelmare-at-miamioh.edu
Date: Fri, 16 Jan 2015 10:16:34 -0600
Subject: [Microscopy] Looking for Diatablis imaging plate system

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Does anyone have a TEM digital imaging plate system - the Ditabis system, any
others? - sitting around no longer being used? And looking to get rid of it?

A couple have come up on the list over the years, as we all move to digital cameras,
but have a unique imaging experiment system we've been playing around with and
these plates might serve really well.

No need to clog the list so just contact me offline.

Thank you!


Richard E. Edelmann, Ph.D., Director
Center for Advanced Microscopy & Imaging
9C Upham Hall
Miami University, Oxford, OH 45056
Ph: 513.529.5712 Fax: 513.529.4243
E-mail: edelmare-at-miamioh.edu
http://www.cami.muohio.edu



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From: PhillipsT-at-missouri.edu
Date: Fri, 16 Jan 2015 10:41:54 -0600
Subject: [Microscopy] Changed dimensions of OSRAM mercury bulb 103 W/2?

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The specifications of the bulb including dimensions of the anode are given at this link file:///C:/Users/phillipst/Downloads/ZMP_56327.pdf - it would be interesting to see whether the match your old bulb or the new one. Let us know the result since I also use those bulbs.


Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://biology.missouri.edu/people/?person=88
http://www.biotech.missouri.edu/mcc/

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To: Phillips, Thomas E.

Hi everyone,

I just ordered the same OSRAM 103 W/2 bulbs I've been using for years in a Zeiss HBO 100 unit. The cathode (top) of all 3 bulbs that arrived is too wide to fit into the HBO 100's clamp (bottom cathode is OK). Comparing with the old bulb I ordered 9 months ago, the anode is indeed wider now than before. Has anyone else received OSRAM 103 W/2 bulbs recently and were the dimensions OK? I got mine from Bulbtronics.com. How about with the similar USHIO 103D?

Thanks,
Esteban

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3, 27 -- Subject: Changed dimensions of OSRAM mercury bulb 103 W/2?
3, 27 -- From: "G. Esteban Fernandez" {g.esteban.fernandez-at-gmail.com} 3, 27 -- To: Confocal Microscopy List {CONFOCALMICROSCOPY-at-lists.umn.edu} ,
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 16 Jan 2015 19:23:07 -0600
Subject: [Microscopy] viaWWW:JEOL 6100 repair

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Email: rowland-at-matsys.com
Name: Rod Rowland

Organization: MATSYS, Inc.

Title-Subject: [Filtered] JEOL 6100

Message: We have a JEOL 6100 which needs the magnification power supply board replaced. Our chiller
stopped working the other day for about an hour and the mag. power supply got so hot half of the
wires melted. We are trying to repair it in house but it's not looking good. If anyone can suggest a
source for either repair it would be greatly appreciated.
The JEOL 6100 model is SM111040-154. The power supply model is SM111040-7A.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 16 Jan 2015 19:24:03 -0600
Subject: [Microscopy] viaWWW:Senior Electron Microscopy Scientist Needed!

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Title-Subject: [Filtered] Senior Electron Microscopy Scientist Needed!

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My name is Evan Francis and I'm a recruiter with Schafer Corporation. We're looking to hire a
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From: Nicolas.Stephant-at-univ-nantes.fr
Date: Tue, 20 Jan 2015 04:12:11 -0600
Subject: [Microscopy] Re: viaWWW:JEOL 6100 repair

Contents Retrieved from Microscopy Listserver Archives
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Hy Rod,

According with my expérience you'll have to change this power supply
because it's hard to repair when such problem occurs. This part contains
many power transistors and, for this reason, it's water cooled. The most
common accident occurs when water flow inside hose and power is switch
off. The gradiant between room temperature and cooling water temperature
may causes condensation of water (from air humidity) on the surface of
power supply and finally destructive short-circuits when power supply is
switch on. Week-end and hollydays are dangerous periods where the SEM
can be shut down but not water cooling supply.
Normally there is a small detector that shut off the board when
temperature exceed 70°; it seems this security has not worked for your
SEM or this was shorted on the past of your SEM (it's very easy to do
from outside of the board and very easy to forget later).
Probably JEOL has not such parts in spare because the JSM 6100 is rather
old. Another solution is to find this part from a scrapped 6100 (there
is today one 6100 on EBay for 12000 dollars). Last solution is to change
all the broken parts of the board (there is probably many). This is
possible for a good electronics engineer if you can supply him the
diagramms.
Hope this is help.

Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique ŕ balayage et microanalyse
2 rue de la Houssiničre
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://cnrs-imn.fr

"Le monde n'existe que pour autant que nous sommes capables d'en produire une image"
C.G Jung

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} wires melted. We are trying to repair it in house but it's not looking good. If anyone can suggest a
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From: stefan.diller-at-t-online.de
Date: Tue, 20 Jan 2015 06:21:41 -0600
Subject: [Microscopy] Zeiss DSM 960 manual

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Dear all,
anybody out there who has a Usermanual for the Zeiss DSM 960 SEM available in PDF?

Best wishes,
Stefan

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 20 Jan 2015 07:07:41 -0600
Subject: [Microscopy] viaWWW:Libra 120. Problem with screens not moving

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Email: jlribas-at-us.es
Name: Juan Luis Ribas

Organization: Microscopy Facility. Univ of Seville. Spain

Title-Subject: [Filtered] Libra 120. Problem with screens not moving

Message: Good morning everybody,
We are having problems with the moving of the small and large screens in our Libra 120.
Sometimes (even 3-4 a day) the small screen stay in up position and the large screen in down
position and the system (Wintem or iTEM) hangs. That means that neither through the left touch
pannel (Small screen or M8) nor the software Wintem buttom have any action when pressed. Also, there
is no way to get them back trough iTEM. The rest of the buttons and actions in Wintem are fully
functional.
The only way to unblock them is to go to off with Libra and on again. Even going to standby has no
action.

Someone with more experience in Libra120 handling has experimented this situation before?
Thank you very much in advance.
Best regards

Juan Luis Ribas

Microscopy Facility. Univ of Seville. Spain

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 20 Jan 2015 07:08:58 -0600
Subject: [Microscopy] viaWWW:'FEI' ESEM Quanta 3D

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Email: rashmi_mehata-at-yahoo.com
Name: Rashmi

Organization: DBT

Title-Subject: [Filtered] ESEM

Message: Hi!

Does any one is having service manual of 'FEI' ESEM Quanta 3D

Rashmi

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13, 17 -- From microscopylistserver-noreply-at-microscopy.com Tue Jan 20 07:08:58 2015
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 20 Jan 2015 21:00:16 -0600
Subject: [Microscopy] viaWWW:Lehigh Microscopy School 2015

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Email: SLC6-at-Lehigh.edu
Name: Sharon Coe

Organization: Lehigh University

Title-Subject: [Filtered] Lehigh Microscopy School 2015

Message: Now accepting registrations for the 45th annual Lehigh Microscopy School which will be held
June 7-12, 2015. All courses, lecturers, and instrument suppliers will be together for what
promises to be a phenomenal week. Course offerings include: Scanning Electron Microscopy and X-ray
Microanalysis • Introduction to SEM and EDS for the New Operator • Focused Ion Beam Instrumentation
and Applications • Problem Solving: Interpretation and Analysis of SEM/EDS/EBSD Data • Quantitative
X-ray Microanalysis: Problem Solving using EDS and WDS Techniques • Scanning Transmission Electron
Microscopy: From Fundamentals to Advanced Applications. Register and pay in full by April 14 for
an Early Bird Discount! Contact: Sharon Coe (sharon.coe-at-Lehigh.edu or 610-758-5133). See
www.lehigh.edu/microscopy for prices.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 20 Jan 2015 21:01:09 -0600
Subject: [Microscopy] viaWWW:how to stream the in-situ TEM video to another computer

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Email: 13qw9-at-queensu.ca
Name: Jason Wang

Organization: Queen's University

Title-Subject: [Filtered] how to stream the in-situ TEM video to another computer?

Message: Hello all, what are the normal ways you use for streaming or capturing the in-situ TEM
videos by another computer? Since the computer directly connected to TEM is not allowed to install
any other software on it, we are not able to take the in-situ video easily. So does connecting to
another computer having a Video Capture Card will solve this problem? Thanks for you time!

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 20 Jan 2015 21:02:05 -0600
Subject: [Microscopy] viaWWW:Stage position upon microscope moving/storage

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Email: gciambrone-at-comcast.net
Name: Gary Ciambrone

Organization: Foothill College

Title-Subject: [Filtered] Stage position upon microscope moving/storage

Message: I'm in the process of beginning to teach some community college students the proper way to
use a microscope. I have used microscopes in the past and have always moved the stage down away
from the objectives (after swinging the low power objective into place) for moving or storing the
scope. But then I have run across some information online that implies that this is incorrect. My
question therefore is: what is the recommended position for the stage when moving or storing a
microscope? Should the stage be moved as far from the objectives as possible, or should the stage
be moved all the way to the top position after the low power objective is swung into place? Thank
you very much.

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From: oshel1pe-at-cmich.edu
Date: Wed, 21 Jan 2015 07:07:41 -0600
Subject: [Microscopy] Re: Ask-A-Microscopist: any flow cytometers with microscopes?

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***************************************************************************************
Forwarded from "Ask a Microscopist"
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not a member the listserver, and
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****************************************************************************************


} realname - hatem alharbi
} Email - hatem.alharbi-at-my.mcphs.edu
} ORGANIZATION - mcphs
} EDUCATION - Graduate College
} LOCATION - boston,MA,USA
} SUBJECT_OF_QUESTION - flow cytometry + microscopy
} QUESTION - Do you have comparison between flow cytomety devices please
} how many flow cytometry + microscopy devices there and what is the best one of them
}



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From: CGorman-at-hookecollege.com
Date: Thu, 22 Jan 2015 10:44:46 -0600
Subject: [Microscopy] Scanning Electron Microscopy short course March 23-27, 2015

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Greetings,

Hooke College of Applied Sciences, located in Westmont, IL, is offering a Scanning Electron Microscopy short course March 23-27, 2015. In addition to lectures, this course emphasizes hands-on training using state-of-the-art equipment.

For further SEM training details and registration information, please follow the link below:

http://www.hookecollege.com/courses/course.asp?COURSE_ID=42


Chris Gorman | Admissions Specialist
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From: eikonika-at-otenet.gr
Date: Thu, 22 Jan 2015 10:50:05 -0600
Subject: [Microscopy] JSM5600LV beam alignment problem

Contents Retrieved from Microscopy Listserver Archives
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Hello
We cannot align the aperture in the JSM5600LV - SEM . Using the wobbler tool
we cannot correct horizontal movement, in all 3 aperture positions.. Looks
like the alignment point lies outside the aperture openings. The problem
worsens with increasing tilt angle and affects the resolution (5K looks like
15K). I cleaned the upper column up to the aperture level and the aperture,
but didn't help (it was not dirty anyway). However, last time I changed
filament I noticed some little white crisps around the Wehnelt.orifice.
Is it likely to have contamination of the lower parts of the column or
somethig else? Any advise will be much appreciated
Thanks
yorgos

Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
************************************


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From: stefan.diller-at-t-online.de
Date: Thu, 22 Jan 2015 11:49:56 -0600
Subject: [Microscopy] Re: JSM5600LV beam alignment problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Yorgos,

I don`t expect the dirt on the wehnelt aperture to be much of a problem, but better clean it away.
Are you sure your final aperture strip (or do you have single apertures?) are not moving in the aperturestrip-holder?
Did you check that the holder is perfectly clean?
Since you say you have the same problem with all three aperture openings it might also be a problem with the astigmatism
correction voltage going to the coils.
If you have the schematics, you can measure this at the plug.


All the best,
Stefan



-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
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Websites:
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Am 22.01.15 um 17:54 schrieb eikonika-at-otenet.gr:
} ----------------------------------------------------------------------------
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} Hello
} We cannot align the aperture in the JSM5600LV - SEM . Using the wobbler tool
} we cannot correct horizontal movement, in all 3 aperture positions.. Looks
} like the alignment point lies outside the aperture openings. The problem
} worsens with increasing tilt angle and affects the resolution (5K looks like
} 15K). I cleaned the upper column up to the aperture level and the aperture,
} but didn't help (it was not dirty anyway). However, last time I changed
} filament I noticed some little white crisps around the Wehnelt.orifice.
} Is it likely to have contamination of the lower parts of the column or
} somethig else? Any advise will be much appreciated
} Thanks
} yorgos
}
} Dr Yorgos Nikas
} Athens Innovative Microscopy
} Skra 36 Voula 16673 GREECE
}
} Tel/fax +30 210 8957677
} mobile +30 6945 107477
} www.eikonika.net www.aim.cat
} ************************************
}
}
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From: oshel1pe-at-cmich.edu
Date: Thu, 22 Jan 2015 15:46:34 -0600
Subject: [Microscopy] Re: Ask-A-Microscopist: manual, software, and cables for Spot Insight

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***************************************************************************************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
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Using the "reply" function in your email does *not* send your answer
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} Below is the result of your form, submitted on Thursday, January 22, 2015 at 03:33:32 PM.
}
} realname - Giovanni De Caro, MD
} Email - neurostar-at-outlook.it
} ORGANIZATION - Museo Scienze Naturali Montalbo´
} EDUCATION - Graduate College
} LOCATION - Campobasso, Italy
} SUBJECT_OF_QUESTION - Spot Insight QE digital camera
} QUESTION - Hi all,
}
} I have acquired secondhand a SPOT Insight QE digital camera , model 4.2 , S/N 221276. The camera appears to be in good overall shape, it powers up and the fan goes; unfortunately I do not have the manual, the software and the data cable. Hs someone of you experience in operating this camera and can give me some hints about how to find the lacking components? The manual is available online on the Spot website, but I do not know if this is the monochrome or the color camera model; about the data cable, maybe it can be found on the web and , to end, maybe there is a shareware software that can be used to get pictures from this camera on my PC.
} I look forward receiving answers form you and remain.



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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 23 Jan 2015 07:24:27 -0600
Subject: [Microscopy] viaWWW:chirality identification using TEM tomography

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Hi Guys

May I suggest you take out the aperture strip and see if you can align the
instrument to your satisfaction. The problem may be in another part of the
column resulting in an apparent aperture problem. I too do not expect the
dirt on the wehnelt to be a real problem.

Try this and let us know what happens. You will need to use small spot
sizes to obtain a reasonable image quality in the test.

Regards

Steve

Steve Chapman FRMS
Protrain for Consultancy and Courses in Electron Microscopy
Mobile +44 (0) 7711 606967 Fax +44 (0)1280 814007
www.emcourses.com


-----Original Message-----
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Sent: 22 January 2015 17:51
To: protrain-at-emcourses.com

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Email: huixin.xiu-at-googlemail.com
Name: Helen Xiu

Organization: FEI

Title-Subject: [Filtered] chirality identification using TEM tomography

Message: Dear all,

We would like to identify the chirality of their spiral material using TEM tomography in a FEI
Tecnai F20 with Explore 3D software. After TEM tomography acquisition, we used Inspect3D 3.1 to
reconstruct the data, however, we found using different direction (Y direction or Z direction) to
reconstruct volume, we got opposite chirality of their spiral. We compared with the chirality got
from SEM image, finding that reconstructing along Y direction gives the right chirality, but as far
as I know, Inspect3D4.0 will reconstruct the volume along z direction as a default. Can anybody
share your expertise with tomography reconstruction or any related experience? Many thanks!

Best regards,
Helen



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From: jehrman-at-mta.ca
Date: Fri, 23 Jan 2015 07:26:43 -0600
Subject: [Microscopy] osmium tetroxide

Contents Retrieved from Microscopy Listserver Archives
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Sadly, it might become even more difficult to buy and transport osmium
tetroxide after this incident, especially in Canada.

http://www.torontosun.com/2015/01/23/man-behind-chemical-scare-educated-and-troubled

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

Barium: What you do with dead chemists.


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From: steven.spurgeon-at-pnnl.gov
Date: Mon, 26 Jan 2015 10:48:47 -0600
Subject: [Microscopy] STEM-EDS - Accessing JEOL EDS data for use in CSI

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Hello everyone,

I'm trying to analyze some STEM-EDS data acquired using a JEOL ARM-200CF. The data includes maps of several edges and is stored in ".img" and ".map" formats. I would like to import this data into the Cornell Spectrum Imager (CSI) program for analysis using PCA and other routines, but there doesn't seem to be a way to do so.

Can anyone offer advice on dealing with JEOL EDS data? Are there any viewers or ImageJ plugins that I could use to read/convert this data into the proper format?

Thanks for your help!

__________________________________________________ 
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate
Pacific Northwest National Laboratory

Tel: +1-509-371-7123 
Email: steven.spurgeon-at-pnnl.gov
Web: www.pnnl.gov



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From: John.Mardinly-at-asu.edu
Date: Mon, 26 Jan 2015 13:20:52 -0600
Subject: [Microscopy] STEM-EDS - Accessing JEOL EDS data for use in CSI

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Cornell Spectrum Imager is for EELS, not EDS.

John Mardinly, ASU

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To: John Mardinly

Hello everyone,

I'm trying to analyze some STEM-EDS data acquired using a JEOL ARM-200CF. The data includes maps of several edges and is stored in ".img" and ".map" formats. I would like to import this data into the Cornell Spectrum Imager (CSI) program for analysis using PCA and other routines, but there doesn't seem to be a way to do so.

Can anyone offer advice on dealing with JEOL EDS data? Are there any viewers or ImageJ plugins that I could use to read/convert this data into the proper format?

Thanks for your help!

__________________________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate Pacific Northwest National Laboratory

Tel: +1-509-371-7123
Email: steven.spurgeon-at-pnnl.gov
Web: www.pnnl.gov



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From: PhillipsT-at-missouri.edu
Date: Mon, 26 Jan 2015 17:36:23 -0600
Subject: [Microscopy] Staff position in LM core

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The University of Missouri - Columbia is looking for a new staff member for our Molecular Cytology Core (MCC) facility. The MCC is an instrumentation resource and service facility for all type of light microscopic imaging. Last year the MCC served approximately 200 clients from over 80 different labs located in 30 departments on our campus. Information on our facility can be found at http://biotech.rnet.missouri.edu/mcc/

The ideal candidate will have extensive experience in confocal microscopy. We are particularly interested in individuals with experience making use of FLIM or FLIM/FRET technology.

Job responsibilities include:

* Supervise and train users (faculty, postdoctoral fellows, and graduate students) in the use of sophisticated microscopy instruments and software.
* Develop new protocols involving single photon and multi-photon confocal microscopy and FLIM/FRET applications.
* Maintain instruments and a clean, safe and orderly work environment.
* Assist in some service work for clients.
* Prepare monthly billing statement; maintain inventory and order supplies, dispense materials to clients.

Although some applicants to this position may hold a PhD degree, it is not a requirement for those with significant experience in a core or imaging lab. To apply for the job, visit http://hrs.missouri.edu/find-a-job/staff/index.php and search for "Research Specialist II" - the job ID number is 15116. If you have questions, you can contact either the MCC's Director, Dr. Tom Phillips (phillipst-at-missouri.edu) or the core's Associate Director, Dr. Alexander Jurkevic (jurkevica-at-missouri.edu). The job will remain open until a suitable candidate is found.

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 26 Jan 2015 18:57:45 -0600
Subject: [Microscopy] viaWWW:Fixation of mitochondria

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Email: sameesh-at-uga.edu
Name: Sam Gonzalez

Organization: University of Georgia

Title-Subject: [Filtered] Fixation of mitochondria

Message: Okay I am very confused about how to go about fixing a sample of isolated mitochondria for TEM.

All the procedures seem to be very vague about "washing the pellet". To me, this implies
resuspending the pellet in buffer and then spinning it back down. But the procedures I have looked
at never mention the g force for this step, but does specify the time So I would assume just use the
g force of the last centrifuge step performed, but this step involves addition of agarose solution
to enrobe the pellet, so it seems like this would be a distinct and unrelated step.

Also, the addition of agarose is never mentioned again, so would I add it to the buffer for the
washing steps, assuming washing involves more centrifugation?

Alternatively, does washing the pellet just mean inundating the pellet with buffer and then pouring
it off? If that is the case, how do i do this for 20 minutes? Just let the buffer sit on the pellet
for 20 minutes then pour it off?

Thanks,
Sam
Very confused masters student

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 26 Jan 2015 18:58:43 -0600
Subject: [Microscopy] viaWWW:Holder Insertion/Extraction problems JEOL 2100

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Email: robernal-at-u.northwestern.edu
Name: Rodrigo Bernal

Organization: Northwestern University

Title-Subject: [Filtered] Holder Insertion/Extraction problems JEOL 2100

Message: Hello All,

We have a custom holder for the JEOL 2100 but have been having problems with insertion and
extraction. The holder does not get "sucked in" by the vacuum after the first and second rotations.
It actually requires a little pushing, and sometimes extraction is very difficult, requiring more
force than standard holder. The puzzling thing is that the holder works perfectly in a JEOL 2010F.

The holder manufacturer has rechecked all physical dimensions of the holder and the o-rings, finding
them within tolerance. JEOL also has taken back the goniometer on repeated occasions but has not
found a solution. Oddly, a loaner goniometer JEOL installs when they take ours away, happens to work
without problems.

Last incident we had, the vacuum was breached upon holder extraction. While pulling the holder, the
outer gasket on the goniometer was extracted too. What is the most possible cause for this? We see
wear marks on the alignment pin of the holder.

Thanks!

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From: Nicolas.Stephant-at-univ-nantes.fr
Date: Tue, 27 Jan 2015 02:30:51 -0600
Subject: [Microscopy] Re: viaWWW:Holder Insertion/Extraction problems JEOL

Contents Retrieved from Microscopy Listserver Archives
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Hello Rodrigo,

It sounds like a goniometer problem. Wear marks on the alignment pin is
not good because the inner tube of the goniometer can be scratched. This
tube is a rotating part that moves with the holder and a scuffing is
possible between this tube and the internal wall of the goniometer.
Scratchs on the inner tube can weak the vacuum sealing during the
movement of the holder.
If this hypothesis is the good one it's necessary to remove this tube
(It's a job for JEOL engineer) to get it into shape of the goniometer
wall (by soft abrasion with Pikal for example). If there is scratchs
this inner tube must be replaced. This is a tricky job and expensive part.
Each vacuum leak during holder push/pull movement is bad experience for
the ion pump.
Hope this is help.

Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique ŕ balayage et microanalyse
2 rue de la Houssiničre
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://cnrs-imn.fr

"Le monde n'existe que pour autant que nous sommes capables d'en
produire une image"
C.G Jung

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Email: robernal-at-u.northwestern.edu
} Name: Rodrigo Bernal
}
} Organization: Northwestern University
}
} Title-Subject: [Filtered] Holder Insertion/Extraction problems JEOL
} 2100
}
} Message: Hello All,
}
} We have a custom holder for the JEOL 2100 but have been having
} problems with insertion and extraction. The holder does not get
} "sucked in" by the vacuum after the first and second rotations. It
} actually requires a little pushing, and sometimes extraction is very
} difficult, requiring more force than standard holder. The puzzling
} thing is that the holder works perfectly in a JEOL 2010F.
}
} The holder manufacturer has rechecked all physical dimensions of the
} holder and the o-rings, finding them within tolerance. JEOL also has
} taken back the goniometer on repeated occasions but has not found a
} solution. Oddly, a loaner goniometer JEOL installs when they take
} ours away, happens to work without problems.
}
} Last incident we had, the vacuum was breached upon holder extraction.
} While pulling the holder, the outer gasket on the goniometer was
} extracted too. What is the most possible cause for this? We see wear
} marks on the alignment pin of the holder.
}
} Thanks!
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7, 26 -- From Nicolas.Stephant-at-univ-nantes.fr Tue Jan 27 02:30:50 2015
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From: nsa2-at-leicester.ac.uk
Date: Tue, 27 Jan 2015 04:58:09 -0600
Subject: [Microscopy] viaWWW:Fixation of mitochondria

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Hi Sam,

Liquid agarose is added to make processing easier. Processing some samples such as cell suspensions and organelles can be tricky, especially when it a very small quantity, as the majority of the sample gets lost during all the washing steps - plus it can get very hard to pellet them in the thick embedding resins. Adding liquid agarose in the earlier stages - then leaving it to cool so that it sets hard - embeds the samples in a larger, gel like pellet that can then be processed through as if it were a larger sample - without the need for centrifugation at each step.

When I process organelles, I usually fix in primary fixative, wash in buffer, centrifuge it down into a good pellet, remove as much supernatant as possible, then add a small drop of warm (not too hot) agarose (3%), making sure there is no air bubbles between it and the pellet, leave in a warm waterbath for 10 minutes to allow the agarose to infuse with the pellet, then move to the fridge until the agarose is completely set. I then carefully remove the agarose/sample from the tube, and if necessary, use a razor blade to cut it into 1mm2 pieces for further processing. You should then have some nice cubes of agarose/sample (or maybe just a small smear of sample in the tip if you're processing organelles or a difficult sample) that you can process through without the need for further spinning.

Sometimes, despite all my best efforts, the sample pellet gets left behind in the Eppendorf when I remove the set agarose gel. In this instance, I carefully slip the pellet onto a glass slide, and sandwich it between the agarose that way. If anyone has any helpful hints to combat this, it would be much appreciated!

Hope that makes more sense Sam?

Nat


Miss Natalie Allcock
CBS Electron Microscopy Facility
College of Medicine, Biological Sciences and Psychology
Adrian Building
University of Leicester
LE1 7RH

+44 (0)116 2523370
emlab-at-leicester.ac.uk

http://www2.le.ac.uk/colleges/medbiopsych/research/cbs/eml/electron-microscopy




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Email: sameesh-at-uga.edu
Name: Sam Gonzalez

Organization: University of Georgia

Title-Subject: [Filtered] Fixation of mitochondria

Message: Okay I am very confused about how to go about fixing a sample of isolated mitochondria for TEM.

All the procedures seem to be very vague about "washing the pellet". To me, this implies resuspending the pellet in buffer and then spinning it back down. But the procedures I have looked at never mention the g force for this step, but does specify the time So I would assume just use the g force of the last centrifuge step performed, but this step involves addition of agarose solution to enrobe the pellet, so it seems like this would be a distinct and unrelated step.

Also, the addition of agarose is never mentioned again, so would I add it to the buffer for the washing steps, assuming washing involves more centrifugation?

Alternatively, does washing the pellet just mean inundating the pellet with buffer and then pouring it off? If that is the case, how do i do this for 20 minutes? Just let the buffer sit on the pellet for 20 minutes then pour it off?

Thanks,
Sam
Very confused masters student

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33, 32 -- From nsa2-at-leicester.ac.uk Tue Jan 27 04:58:07 2015
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 27 Jan 2015 07:10:34 -0600
Subject: [Microscopy] viaWWW:RMS Electron Microscopy Spring School

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Email: alice-at-rms.org.uk
Name: Alice Pyper

Organization: Royal Microscopical Society

Title-Subject: [Filtered] RMS Electron Microscopy Spring School

Message: The Royal Microscopical Society Electron Microscopy Spring School is talking place at Leeds
University, England, from 23rd to 27th March 2015.

The School offers education on the theory and practice of scanning and transmission electron
microscopy. The course covers, imaging, diffraction, and chemical microanalysis, as well as the
important area of specimen preparation. It consists of lectures, demonstrations and hands on
practical periods, as well as offering plenty of opportunity to ask questions, and to arrange time
for specific demonstrations. There are two basic streams, Physical and Engineering Sciences, and
Life Sciences, with an additional stream for those wishing to concentrate on TEM.

The course is designed to suit both beginners and experienced microscopists from all areas of
academia and industry.

We are pleased to have Steve Chapman give us an insight into a life in electron microscopy, by
presenting the annual lecture which he has entitled "50 years and a Million Miles"

The contact for more information is alice-at-rms.org.uk


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From: LettJ-at-ent.wustl.edu
Date: Tue, 27 Jan 2015 10:35:22 -0600
Subject: [Microscopy] LM -- Leica RM2065 rotary microtome

Contents Retrieved from Microscopy Listserver Archives
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Hello,

Does anyone have a PDF of the Leica RM2065 operator's manual? We need to set up and use our old unit but the manual is missing.

Thank you,

Jaci

Jaclynn Lett
Senior Research Technician, EM Facility
Research Center for Auditory and Vestibular Studies
Department of Otolaryngology
Washington University School of Medicine
660 S. Euclid Ave., Campus Box 8115
St. Louis, MO 63110
Office: 314-747-7257
Fax: 314-747-7230
Email: lettj-at-ent.wustl.edu
Website: http://otocore.wustl.edu

The Research Center for Auditory and Vestibular Studies is supported by the National Institutes of Health NIDCD Grant P30DC04665. We kindly ask that all publications and presentations utilizing data obtained through our facilities (provided by, prepared by, or imaged using our equipment) include a statement acknowledging such.




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From: LettJ-at-ent.wustl.edu
Date: Tue, 27 Jan 2015 16:51:29 -0600
Subject: [Microscopy] TEM -- Reichert Knifemaker II

Contents Retrieved from Microscopy Listserver Archives
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Hello,

My second question of the day: Does anyone have a PDF of the Reichert Knifemaker II? (I guess the Reichert-Jung 705202 is almost identical.)

Thank you,

Jaci

Jaclynn Lett
Senior Research Technician, EM Facility
Research Center for Auditory and Vestibular Studies
Department of Otolaryngology
Washington University School of Medicine
660 S. Euclid Ave., Campus Box 8115
St. Louis, MO 63110
Office: 314-747-7257
Fax: 314-747-7230
Email: lettj-at-ent.wustl.edu
Website: http://otocore.wustl.edu

The Research Center for Auditory and Vestibular Studies is supported by the National Institutes of Health NIDCD Grant P30DC04665. We kindly ask that all publications and presentations utilizing data obtained through our facilities (provided by, prepared by, or imaged using our equipment) include a statement acknowledging such.





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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 27 Jan 2015 20:03:10 -0600
Subject: [Microscopy] viaWWW:Spot microscope camera - help needed

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Email: neurostar-at-outlook.it
Name: Giovanni De Caro

Organization: Museo Scienze Naturali Montalbo´

Title-Subject: [Filtered] Spot microscope camera - help needed

Message: Hi, I am the scientific director of a no profit Science Museum for youngsters based in
Southern Italy (http://web.tiscali.it/exploratorium).
We have been given an old SPOT Insight QE color digital camera , model 4.2 , S/N 221276 (Diagnostic
Instruments inc.) and we would like to use it for our educational programs. The camera came to us
with its power supply, it powers up fine and the fan runs, the only problem is that we did not get
the data cable and the proprietary PCI card to run it.
We did contact Diagnostic Instruments but they asked about 2000 USD for the card and the cable, so
we are looking for a different solution.
May you help us? Are there universal PCI cards that can be modified to work with this camera?
Thank you for your kind help, I look forward receiving your reply and remain
Giovanni De Caro, MD
Italy


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From: jerry.biehler-at-gmail.com
Date: Tue, 27 Jan 2015 20:34:32 -0600
Subject: [Microscopy] Re: viaWWW:Spot microscope camera - help needed

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I wouldn’t be surprised if it is a pretty generic RS-422 parallel interface like AIA. You might talk to the guys at EDT (Engineering Design Team, Inc), they make interfaces for a lot of cameras.

There is a card on ebay that is probably for your camera, search fir "Diagnostic Instruments Inc P/N 0457” and it should come up. Make them an offer.

-Jerry


} On Jan 27, 2015, at 6:21 PM, microscopylistserver-noreply-at-microscopy.com wrote:
}
} SPOT Insight QE



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From: rdpierce-at-pobox.com
Date: Tue, 27 Jan 2015 23:27:49 -0600
Subject: [Microscopy] SEM: Vacuum hose source?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

First, thanks to everyone for all the excellent advice I've received in
the past on this list. I've got the rather unique task of running an SEM
program accessible to the general public at a makerspace in Chicago, as
a volunteer with no formal training and a shoestring budget. As far as I
know, our circumstance is rather unique. There's no way I could have
managed this long without all the help I've received here.

I managed to track down and repair the problem with wildly fluctuating
vacuum readings (an extremely dirty Penning gauge) and the reason the
vacuum was really bad after I fixed it (a leaking air admit solenoid.)
But a bad shaft coupling on our Edwards E2M12 rotary pump was causing it
to overheat and burn its oil, and, unfortunately, splattering said burnt
oil up the rubber vacuum hose. I secured funding to get the pump
overhauled, but now I need to know what to do with the hose. I figure it
needs to be replaced, seeing as it reeks of burnt oil.

What I'm measuring seems to be about 7/8 I.D. and 1/4" wall thickness,
so about 1 3/8" O.D. It's difficult to get a good reading as the hose
ends were either clamped around something or stretched. Looking at
http://www.pchemlabs.com/subcatagoryb.asp?pid=Pure-Gum-Rubber it looks
like the gum rubber vacuum hose they sell jumps from 13/16" I.D. with
3/8" walls (listed as used for KF16) 1" with 1/2" walls (listed as used
for KF25). The pump has a KF25 fitting, and the hose slips over a copper
pipe in a concrete block as a vibration damper. But that size seems like
it would be too large.

McMaster-Carr is local for us, so I checked
http://www.mcmaster.com/#abrasion-resistant-gum-rubber-tubing/ and see
vacuum rated red and tan tubing. (I have no idea what the color means.
For reference, the tubing that came with the SEM was black.) The tan
jumps from 3/4" with 5/8" walls to 1" with 1/2" walls. The red does come
in 7/8" but it has 1/2" walls too. I'm not even sure if that would fit
out the opening in the back of the SEM.

There's a good chance the vacuum hose is original to the scope, which is
a Leica S430. Any help would be appreciated. Alternately, am I incorrect
in assuming the hose should be replaced?

Thanks,
Ryan

==============================Original Headers==============================
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From: vitalylazar-at-att.net
Date: Wed, 28 Jan 2015 01:14:42 -0600
Subject: [Microscopy] Re: SEM: Vacuum hose source?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

good "standard" supplier is
http://duniway.com/catalog/su-tubing-clamps.php (many components, not
just the hose)

a cheap-cheap option is more work but you can make whatever diameter
hose plus it can be easily compressed around a (much) smaller diameter
tube since support spring is separate. Components:
a) braided PVC of suitable diameter, either Home Depot etc. or
McMaster Carr;
b) continuous spring for supporting hose from collapsing, Again
McMaster Carr.

tubing:
http://www.mcmaster.com/#standard-high-pressure-pvc-tubing/=vnotog then
select "clear"
or from home page enter "High-Pressure PVC Tubing" in search line, then
select "clear"

spring:
http://www.mcmaster.com/#cut-to-length-springs/=vnp0wo then
select "extension spring"
or from home page enter "Cut-to-Length Extension Springs"
stainless springs softer and won't rust. They sold in 20" pieces and
will easily extend 10+ times. Springs made with wire 0.04" to 0.08"
thick are best for diameters around 1".

3/4" to 1" ID vac. hose made in this fashion costs between $2 and $5 per
foot depending on source of materials. It is transparent so oil
accumulation can be seen before problems begin plus PVC will outlast
rubber hands down. The oldest still in use I installed in 1998.

Use standard common hose-clams as long as they flat and at least close
to 1/2" wide. Wire clamps not recommended.

Thin-wall-soft-not-braided low pressure PVC is even cheaper but less
durable and unforgiving wrt vac. leaks at installation. Same longevity
unless stressed.

For long straight connections use large diameter thin-wall copper tube,
again from Home Depot, just ensure adequate cross-section for very long
connections.

Vitaly Feingold
SIA
2773 Heath Lane
Duluth GA 30096
Ph. 770-232-7785
Fax 770-232-1791
www.sia-cam.com
vitaly-at-sia-cam.com

On 1/28/2015 12:29 AM, rdpierce-at-pobox.com wrote:
} ----------------------------------------------------------------------------
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}
} First, thanks to everyone for all the excellent advice I've received in
} the past on this list. I've got the rather unique task of running an SEM
} program accessible to the general public at a makerspace in Chicago, as
} a volunteer with no formal training and a shoestring budget. As far as I
} know, our circumstance is rather unique. There's no way I could have
} managed this long without all the help I've received here.
}
} I managed to track down and repair the problem with wildly fluctuating
} vacuum readings (an extremely dirty Penning gauge) and the reason the
} vacuum was really bad after I fixed it (a leaking air admit solenoid.)
} But a bad shaft coupling on our Edwards E2M12 rotary pump was causing it
} to overheat and burn its oil, and, unfortunately, splattering said burnt
} oil up the rubber vacuum hose. I secured funding to get the pump
} overhauled, but now I need to know what to do with the hose. I figure it
} needs to be replaced, seeing as it reeks of burnt oil.
}
} What I'm measuring seems to be about 7/8 I.D. and 1/4" wall thickness,
} so about 1 3/8" O.D. It's difficult to get a good reading as the hose
} ends were either clamped around something or stretched. Looking at
} http://www.pchemlabs.com/subcatagoryb.asp?pid=Pure-Gum-Rubber it looks
} like the gum rubber vacuum hose they sell jumps from 13/16" I.D. with
} 3/8" walls (listed as used for KF16) 1" with 1/2" walls (listed as used
} for KF25). The pump has a KF25 fitting, and the hose slips over a copper
} pipe in a concrete block as a vibration damper. But that size seems like
} it would be too large.
}
} McMaster-Carr is local for us, so I checked
} http://www.mcmaster.com/#abrasion-resistant-gum-rubber-tubing/ and see
} vacuum rated red and tan tubing. (I have no idea what the color means.
} For reference, the tubing that came with the SEM was black.) The tan
} jumps from 3/4" with 5/8" walls to 1" with 1/2" walls. The red does come
} in 7/8" but it has 1/2" walls too. I'm not even sure if that would fit
} out the opening in the back of the SEM.
}
} There's a good chance the vacuum hose is original to the scope, which is
} a Leica S430. Any help would be appreciated. Alternately, am I incorrect
} in assuming the hose should be replaced?
}
} Thanks,
} Ryan
}
} ==============================Original Headers==============================
} 6, 16 -- From rdpierce-at-pobox.com Tue Jan 27 23:27:47 2015
} 6, 16 -- Received: from elna.mackenziegems.com (dsl253-036-183.chi1.dsl.speakeasy.net [66.253.36.183])
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} 6, 16 -- Message-ID: {54C8734F.2000009-at-pobox.com}
} 6, 16 -- Date: Tue, 27 Jan 2015 23:27:43 -0600
} 6, 16 -- From: Ryan Pierce {rdpierce-at-pobox.com}
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==============================Original Headers==============================
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From: wtivol-at-sbcglobal.net
Date: Wed, 28 Jan 2015 02:14:27 -0600
Subject: [Microscopy] Re: SEM: Vacuum hose source?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


On Jan 27, 2015, at 9:43 PM, rdpierce-at-pobox.com wrote:

} First, thanks to everyone for all the excellent advice I've received
} in
} the past on this list. I've got the rather unique task of running an
} SEM
} program accessible to the general public at a makerspace in Chicago,
} as
} a volunteer with no formal training and a shoestring budget. As far
} as I
} know, our circumstance is rather unique. There's no way I could have
} managed this long without all the help I've received here.
}
} I managed to track down and repair the problem with wildly fluctuating
} vacuum readings (an extremely dirty Penning gauge) and the reason the
} vacuum was really bad after I fixed it (a leaking air admit solenoid.)
} But a bad shaft coupling on our Edwards E2M12 rotary pump was
} causing it
} to overheat and burn its oil, and, unfortunately, splattering said
} burnt
} oil up the rubber vacuum hose. I secured funding to get the pump
} overhauled, but now I need to know what to do with the hose. I
} figure it
} needs to be replaced, seeing as it reeks of burnt oil.
}
} What I'm measuring seems to be about 7/8 I.D. and 1/4" wall thickness,
} so about 1 3/8" O.D. It's difficult to get a good reading as the hose
} ends were either clamped around something or stretched. Looking at
} http://www.pchemlabs.com/subcatagoryb.asp?pid=Pure-Gum-Rubber it looks
} like the gum rubber vacuum hose they sell jumps from 13/16" I.D. with
} 3/8" walls (listed as used for KF16) 1" with 1/2" walls (listed as
} used
} for KF25). The pump has a KF25 fitting, and the hose slips over a
} copper
} pipe in a concrete block as a vibration damper. But that size seems
} like
} it would be too large.
}
} McMaster-Carr is local for us, so I checked
} http://www.mcmaster.com/#abrasion-resistant-gum-rubber-tubing/ and see
} vacuum rated red and tan tubing. (I have no idea what the color means.
} For reference, the tubing that came with the SEM was black.) The tan
} jumps from 3/4" with 5/8" walls to 1" with 1/2" walls. The red does
} come
} in 7/8" but it has 1/2" walls too. I'm not even sure if that would fit
} out the opening in the back of the SEM.
}
} There's a good chance the vacuum hose is original to the scope,
} which is
} a Leica S430. Any help would be appreciated. Alternately, am I
} incorrect
} in assuming the hose should be replaced?
}
} Thanks,
} Ryan


Dear Ryan,
If you make a cut through the tubing, you should be able to measure
ID and OD accurately.
Yours,
Bill




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From: microwink-at-gmail.com
Date: Wed, 28 Jan 2015 10:06:07 -0600
Subject: [Microscopy] Now Hiring: Focused Ion Beam Instrument Specialist at Virginia Tech

Contents Retrieved from Microscopy Listserver Archives
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Hello,

Virginia Tech is seeking an Instrument specialist for its Nanoscale
Characterization and Fabrication Laboratory. The selected candidate
will: Operate instrumentation in the Nanoscale Characterization and
Fabrication Laboratory. Maintain and operate the FEI Helios Nanolab
600 Focused Ion Beam (FIB) in the NCFL. Keep the laboratory up to date
in the methods and techniques used with these instruments. Perform FIB
analyses and provide assessments of the results, support individual
research with training on the instruments and guidance on the
techniques. Provide analytical service to industrial clients. Maintain
logs of all equipment usage and provide info to accounting monthly for
timely billing through the service center. Comply with all
Environmental Health and Safety regulations for proper lab operation.
Keep up to date in the field on current techniques and procedures.
Provide demonstrations for classes and visitors, and assistance on
other instruments as needed. Virginia Tech is an Equal
Opportunity/Affirmative Action Institution.

For further information or to apply, please go to:
https://listings.jobs.vt.edu/postings/54282

Thank you,
Christopher Winkler, PhD
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From: microscopylistserver-noreply-at-microscopy.com
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Subject: [Microscopy] viaWWW:manual for JEOL HCD

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Title-Subject: [Filtered] manual for HCD

Message: Does anyone have a manual for a JEOL hollow-cone diffraction unit? Specifically, it's
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Subject: [Microscopy] viaWWW:SAVE THE DATE: NESM's Annual Spring Meeting @ Bruker!

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Message: Dear fellow microscopists,

This is a reminder to SAVE THE DATE for the New England Society for Microscopy’s annual Spring
Meeting, which will take place on Thursday, March 5th at Bruker Corporation in Billerica, MA. The
meeting will consist of facility tours, a buffet dinner and two technical talks showcasing
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 30 Jan 2015 07:02:54 -0600
Subject: [Microscopy] viaWWW:Analysis of Pb in the SEM-EDS

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Name: Gary

Organization: University of Oxford

Title-Subject: [Filtered] Analysis of Pb in the SEM-EDS

Message: Hi
I have several copper-tin-lead alloy standards with varying Pb contents(5, 10, 15, 20).
I analyzed them by the SEM-EDS, but it keeps giving me lower Pb concentrations(around 2, 5, 7, 10
individually).
The totals are good around 100 precents, but just inaccurate(tin is the same, bur Pb is lower and Cu
is higher than their real values.
I use the default internal calibration (leaded glass) to calibrate Pb element.
It is known that Pb in the copper alloy will form a separate phase.

Have anyone encountered such a problem and how to solve it ?

Thanks
Gary

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From: wesaia-at-iastate.edu
Date: Fri, 30 Jan 2015 09:03:53 -0600
Subject: [Microscopy] viaWWW:Analysis of Pb in the SEM-EDS

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How flat is the surface? What is the phase distribution on a micro-scale? If the Pb is present as a second phase it might well be preferentially polished away changing the volume (and mass) fraction and skewing the results.

Also, EDS correction routines are written to process intensities from homogeneous analysis volumes. If you are trying to lower the magnification and scan an area, you will present the sum of the phase intensities to the analyzer. However, Pb probably had nothing to do in determining the interaction volume in the regions where the Cu and Sn are nor did the Cu and Sn x-rays undergo absorption by Pb atoms. Once in a while, EDS might give the right answer in such cases, but I would not count on it being the right.

BTW, the same issue would be true of WDS too. The matrix corrections are much the same. They assume a homogenous sample volume.

Warren

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Email: sniper711220-at-hotmail.com
Name: Gary

Organization: University of Oxford

Title-Subject: [Filtered] Analysis of Pb in the SEM-EDS

Message: Hi
I have several copper-tin-lead alloy standards with varying Pb contents(5, 10, 15, 20).
I analyzed them by the SEM-EDS, but it keeps giving me lower Pb concentrations(around 2, 5, 7, 10 individually).
The totals are good around 100 precents, but just inaccurate(tin is the same, bur Pb is lower and Cu is higher than their real values.
I use the default internal calibration (leaded glass) to calibrate Pb element.
It is known that Pb in the copper alloy will form a separate phase.

Have anyone encountered such a problem and how to solve it ?

Thanks
Gary

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From: drhull-at-zoominternet.net
Date: Fri, 30 Jan 2015 10:13:17 -0600
Subject: [Microscopy] viaWWW:Analysis of Pb in the SEM-EDS

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I would not use the Pb in glass standard for this analysis. You should
try to use a standard as close to your unknown composition. Pb in SiO2
is not close. I would try using one of you CuSnPb standards as the
standard and see how the results turn out. You say you 'use the default
internal calibration (leaded glass) to calibrate Pb element', did you
use the same operating conditions? kV, take off angle. Also which lines
for each element did you use? K L M? Be careful of background too.


wesaia-at-iastate.edu wrote:
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} How flat is the surface? What is the phase distribution on a micro-scale? If the Pb is present as a second phase it might well be preferentially polished away changing the volume (and mass) fraction and skewing the results.
}
} Also, EDS correction routines are written to process intensities from homogeneous analysis volumes. If you are trying to lower the magnification and scan an area, you will present the sum of the phase intensities to the analyzer. However, Pb probably had nothing to do in determining the interaction volume in the regions where the Cu and Sn are nor did the Cu and Sn x-rays undergo absorption by Pb atoms. Once in a while, EDS might give the right answer in such cases, but I would not count on it being the right.
}
} BTW, the same issue would be true of WDS too. The matrix corrections are much the same. They assume a homogenous sample volume.
}
} Warren
}
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} Organization: University of Oxford
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} Title-Subject: [Filtered] Analysis of Pb in the SEM-EDS
}
} Message: Hi
} I have several copper-tin-lead alloy standards with varying Pb contents(5, 10, 15, 20).
} I analyzed them by the SEM-EDS, but it keeps giving me lower Pb concentrations(around 2, 5, 7, 10 individually).
} The totals are good around 100 precents, but just inaccurate(tin is the same, bur Pb is lower and Cu is higher than their real values.
} I use the default internal calibration (leaded glass) to calibrate Pb element.
} It is known that Pb in the copper alloy will form a separate phase.
}
} Have anyone encountered such a problem and how to solve it ?
}
} Thanks
} Gary
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From: bryan-at-systap.com
Date: Sat, 31 Jan 2015 10:49:47 -0600
Subject: [Microscopy] backscatter detector element for the Hitachi S-800?

Contents Retrieved from Microscopy Listserver Archives
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Does anyone have a spare backscatter detector element for the Hitachi S-800?

If so, kindly reply off-list to minimize traffic.

Thanks,
Bryan

bryan-at-systap.com

4501 Tower Road
Greensboro NC, USA

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 1 Feb 2015 12:52:21 -0600
Subject: [Microscopy] viaWWW:Looking for a used EDS system

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X-from: hailstone-at-cis.rit.edu

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Email: hailstone-at-cis.rit.edu
Name: Rich Hailstone

Organization: Rochester Institute of Technology

Title-Subject: [Filtered] EDS system

Message: I am looking to purchase a used Si(Li) EDS system for a JEOL 2010 (horizontal EDS port). It
seems the vendors have abandoned this technology for the SDD, but these systems are beyond our
budget justification for such an old scope without STEM. If you are interested in selling such a
system, please contact me offline.

Rich

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 2 Feb 2015 08:20:05 -0600
Subject: [Microscopy] viaWWW:Job opening for an experienced Electron Microscopist - Univ.

Contents Retrieved from Microscopy Listserver Archives
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X-from: lamiller-at-illinois.edu

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Email: lamiller-at-illinois.edu
Name: Lou Ann Miller

Organization: Materials Research Laboratory, University of Illinois

Title-Subject: [Filtered] Job opening for an experienced Electron Microscopist

Message: Research Scientist(s) position
Please see the link below for the job information and to apply electronically online:


https://jobs.illinois.edu/academic-job-board/job-details?jobID=36125&job=research-scientist-materials-research-laboratory-a1300472


*Note for those unfamiliar with University jobs here, a common question: Is the job for only one
year with the "12 month appointment"?

All academic positions at the University are appointed on a 9- or 12-month service basis, eligible
for annual renewal based upon mutual agreement and the annual performance review process. This
Academic Professional position is a regularly recurring staff scientist role not subject to grant
funding. See http://ap.illinois.edu for more information.


{ { { { { { { { { { { { { { { { { {} } } } } } } } } } } }
Lou Ann Miller
Biological Electron Microscopy
Frederick Seitz Materials Research Laboratory
Lab Room 125 Office 374 MRL
104 South Goodwin Ave
Urbana, IL 61801
Campus mail code: MC-230

217-244-1567
lamiller-at-illinois.edu
http://mrl.illinois.edu


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23, 18 -- of Illinois
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From: lamiller-at-illinois.edu
Date: Tue, 3 Feb 2015 06:08:51 -0600
Subject: [Microscopy] Job posting: no job

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings fellow Microscopists!

I had several questions from folks on the list serve about another job posting. I did not see it yesterday, but it appears to be a resend of the … maybe now 15-16 month ago email that somehow got retransmitted a while back.


I’m sorry, I do not know where in cyber this came from, but there is no TEM job opening at MRL laboratory at this time. ( They updated our Lync system, perhaps it was somehow caught in that action)


Thanks to those who asked, so I became aware, and many apologies for those looking for a job, that this has resurfaced. We filled both spots a year ago.


Lou Ann




{ { { { { { { { { { { { { { { { { {} } } } } } } } } } } }
Lou Ann Miller
Biological Electron Microscopy
Frederick Seitz Materials Research Laboratory
Lab Room 125 Office 374 MRL
104 South Goodwin Ave
Urbana, IL 61801
Campus mail code: MC-230

217-244-1567
lamiller-at-illinois.edu
http://mrl.illinois.edu



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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 4 Feb 2015 07:14:03 -0600
Subject: [Microscopy] viaWWW:advice on new camera for Zeiss Axioplan 2

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Email: lou.howell-at-live.com
Name: Louise

Organization: Institute of Cancer Research

Title-Subject: [Filtered] advice on new camera for Zeiss Axioplan 2


Message: Dear all,

I’m looking into upgrading some software for my Zeiss Axioplan 2 microscope (currently have very old
SmartCapture software). We look at protein expression levels and also DNA damage foci and so
something which could quantify these signals would be ideal. Also I’m looking into buying a new
camera compatible with the new software/microscope.

Any advice on the best camera and suitable software compatible with this microscope would be most
gratefully received.

Thank you very much in advance.

Louise.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 4 Feb 2015 16:56:53 -0600
Subject: [Microscopy] viaWWW:Calibration of Oxford EDS.

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Email: ravi.thakkar369-at-gmail.com
Name: Ravi

Organization: KSU

Title-Subject: [Filtered] Calibration of Oxford EDS.

Message: Hi,
I have EDS analysis of Au Nanoparticle on Copper TEM grid using Oxford EDS.But I am getting lot of
cu peaks and instead of Au peak.
I am using INCA microanalysos suit version 4.15.
Could anybody suggest me how to do calibration and What kind of std reference sample needed for
calibration.?

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From: zaluzec-at-microscopy.com
Date: Sat, 7 Feb 2015 14:48:16 -0600
Subject: [Microscopy] viaWWW: FEI TEM HRTEM ESEM Service Manuals

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Hi Ravi,

You are always going to see Cu under those circumstances. The amount of Cu metal in the grid is vast compared to the size of an Au nanoparticle. As your electron beam passes through the Au nanoparticle, some electrons will scatter and hit the grid producing fluorescence. There can also be electrons scattered from electron microscope components such as apertures as well — though this is less a problem these days than it used to be (depends on the age of your microscope).

If you aren’t interested in Cu, I suggest you just ignore the peak. If you are interested in Cu in your nanoparticle, then producers such as EMS, Ted Pella and Ladd make a variety of grids out of a variety of elements and compounds so that you can almost certainly find some element you don’t care about.

When avoiding Cu, I’ve had luck using beryllium, and silicon nitride.

For general calibration, a simple and very common approach is to use the Cliff-Lorimer method of k-factors: Cliff, G., & Lorimer, G. W. (1975). The Quantitative Analysis of Thin Specimens. Journal of Microscopy, 103(2), 203–207.

The Oxford software has this method built in and allows you to define those k-factors once you measure them (using the method from the paper above). The Oxford software also has some good guesses built in if you don’t need very much accuracy.

I have also found it useful to extract peak areas from TEM/EDS spectra and process them myself. I first use fityk, Python, or the Oxford/Bruker softwares to fit peak areas. Then I use k-factors and apply a thickness correction using some software I wrote for myself (https://github.com/ZGainsforth/StoichiometryFitter/blob/master/Stoichiometry%20Fitter%20Screenshot.png) You might like a solution like this if you want to control every aspect of the analysis.

Hopefully that clears it up?

Zack

On Feb 4, 2015, at 3:14 PM, microscopylistserver-noreply-at-microscopy.com wrote:




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Email: ravi.thakkar369-at-gmail.com
Name: Ravi

Organization: KSU

Title-Subject: [Filtered] Calibration of Oxford EDS.

Message: Hi,
I have EDS analysis of Au Nanoparticle on Copper TEM grid using Oxford EDS.But I am getting lot of
cu peaks and instead of Au peak.
I am using INCA microanalysos suit version 4.15.
Could anybody suggest me how to do calibration and What kind of std reference sample needed for
calibration.?

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Title-Subject: [Filtered] 'FEI' TEM HRTEM ESEM service Manuals

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From: zaluzec-at-microscopy.com
Date: Sat, 7 Feb 2015 14:53:11 -0600
Subject: [Microscopy] viaWWW: Two Postdoc Positions - Glasgow and Oxford

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Email: ian.maclaren-at-glasgow.ac.uk
Name: Ian MacLaren

Organization: University of Glasgow

Title-Subject: [Filtered] Two Postdoc Positions - Glasgow and Oxford

Message: SCHOOL OF PHYSICS AND ASTRONOMY, UNIVERSITY OF GLASGOW
DEPARTMENT OF MATERIALS, UNIVERSITY OF OXFORD

Two post-doctoral research positions in fast pixelated detectors for
scanning transmission electron microscopy

Glasgow: Research Assistant / Associate,
Salary: Grade 6 / 7 Ł27,057 - Ł30,434 / Ł33,242 - Ł37,394 per annum,
Ref: 010095

Oxford: Research Associate,
Grade 7 / Salary in the range: Ł30,434 to Ł33,242 p.a. / Vacancy ID: 117029

Applications are invited for two fixed-term (up to 36 months)
postdoctoral positions (one at Glasgow and one at Oxford) in research
associated with using fast pixelated detectors in STEM.

The overarching aim of the project is to use fast pixelated detectors to
record the intensity as a function of scattering angle in the detector
plane of a STEM, which is effectively a diffraction pattern. By
recording each two-dimensional diffraction pattern as a function of
probe position in a two-dimensional scan, a four-dimensional data set
can be recorded that is the ultimate STEM imaging experiment. Such a
rich dataset contains information about the phase shift that results
from transmission, about the composition of the sample, the strain in
the sample and the three-dimensional ordering in the sample. We propose
to develop the methods to record this 4D data set, using fast pixelated
detectors, and by developing an optimised direct-detection system,
together with the methods to process such datasets to enable physically
useful measurements to be made. Application areas include imaging of
soft materials, detection of fields and charge transfer, separation of
strain and compositional information, and measurement of
three-dimensional crystallographic ordering.

The posts have been created through the funding by the EPSRC of a joint
project between The Universities of Glasgow and Oxford on developing
methods and applications associated with pixelated detectors in
aberration-corrected scanning transmission electron microscopy.

The posts are available from 1 April 2015. By the start date,
applicants should have a good first degree and completed PhD in Physics,
Materials, Engineering, Chemistry or a related field. They should have
experience with operating a STEM and a good understanding of its
principles of operation, a high level of expertise in the theory of
electron scattering and image formation in the electron microscope, and
excellent IT skills including the use of electron microscopy specific
software packages and an ability to write code using a suitable
high-level language.

The closing date for applications is 11 March 2015 (Glasgow, midnight;
Oxford, midday) with interviews planned for 24 March 2015 (in Glasgow).
It is important that candidates submit applications to both Oxford and
Glasgow (these can be identical applications) if they wish to be
considered for both posts.

Informal enquiries about the Glasgow post may be directed to Dr Ian
MacLaren, ian.maclaren-at-glasgow.ac.uk
Informal enquiries about the Oxford post should be directed to Prof.
Peter Nellist, peter.nellist-at-materials.ox.ac.uk


Glasgow Application Details:

Apply online at www.glasgow.ac.uk/jobs

Closing date: 11 March 2015.
The School of Physics and Astronomy has been awarded Juno Champion
status and also the Athena SWAN Silver Award.

The University has recently been awarded the Athena SWAN Institutional
Bronze Award.

The University is committed to equality of opportunity in employment.

The University of Glasgow, charity number SC004401.


Oxford Application Details:

Applications for the Oxford post are to be made online (vacancy
reference 117029). To apply for this role and for further details,
including the job description and selection criteria, please click on
the link below:

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From: frank_karl-at-ardl.com
Date: Mon, 9 Feb 2015 12:15:49 -0600
Subject: [Microscopy] TEM and HIPS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Everyone,
I'm looking for suggestions about a beam sensitive sample.

I'm cutting thin sections with a cryomicrotome of HIPS, High Impact Polystyrene, that is toughened with polybutadiene. I'm cutting at -100 C because of the low TG of the polybutadiene and staining with Os.
My thin sections are very beam sensitive, too sensitive to focus well and get a good image. I'm imaging at 80KV with 8800X magnification. If I spread out my beam to reduce beam damage I can't see my sample to focus and any pictures I take look crappy.

Any suggestions?

I've been thinking about trying carbon coated grids to help act as a heat sink as well as going to a larger TEM spot setting. I have read that lower KV can make the damage worse because each electron resides in the thin section longer and produced more heat. Is this a tried and true observation?

Thanks!!!

Frank

This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.



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9, 28 -- {microscopy-at-microscopy.com}
9, 28 -- Date: Mon, 9 Feb 2015 13:15:26 -0500
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From: microwink-at-gmail.com
Date: Mon, 9 Feb 2015 12:39:44 -0600
Subject: [Microscopy] Re: TEM and HIPS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Karl,

You'll probably have better luck if you can put a thin carbon coating
on top of your microtomed sample prior to examination in the TEM. A
nanometer or less--just a few seconds in most carbon coaters--should
minimize the charging and preserve your samples under the beam.
Staining should also help stabilize the sample but apparently not in
this case.

If you don't have a coater then you can try "cooking" the microtome
sections in the TEM: go to a few thousand magnification, remove the
condenser aperture and adjust your condenser lenses to the largest
spot size (highest beam current), and spread the beam out to
illuminate a large fraction of the thin section. Leave it in this
condition, assuming the sample is not sputtering away, for a few
minutes. Take a look at 10kx magnification and see if it's stable. If
not, try again for a longer time. This may never stabilize the section
but often helps in my experience.

We look at HIPS samples (albiet stained samples with a few angstroms
of carbon coating) all the time at 200kV and 300kV and even run long
STEM maps without issue. Try a higher accelerating voltage if your
microscope is capable of it. The damage mechanisms are complicated in
TEM but generally lower voltages increase interaction cross-section of
the electron in the sample, leading to higher sample temperatures and
radiolysis effects. Higher accelerating voltages minimize the
interaction cross-section but lead to knock-on damage. Egerton, Li,
and Malac wrote a paper titled, "Radiation Damage in the TEM and SEM"
(Micron 35 (2004) 399-409) which can be a good starting point for
understanding beam induced damage.

Good luck,
Chris
Senior Research Associate
Nanoscale Characterization and Fabrication Laboratory
Institute for Critical Technology and Applied Science
Virginia Tech
(540) 200-9511


On Mon, Feb 9, 2015 at 1:25 PM, {frank_karl-at-ardl.com} wrote:
}
}
}
}
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}
} Hello Everyone,
} I'm looking for suggestions about a beam sensitive sample.
}
} I'm cutting thin sections with a cryomicrotome of HIPS, High Impact Polystyrene, that is toughened with polybutadiene. I'm cutting at -100 C because of the low TG of the polybutadiene and staining with Os.
} My thin sections are very beam sensitive, too sensitive to focus well and get a good image. I'm imaging at 80KV with 8800X magnification. If I spread out my beam to reduce beam damage I can't see my sample to focus and any pictures I take look crappy.
}
} Any suggestions?
}
} I've been thinking about trying carbon coated grids to help act as a heat sink as well as going to a larger TEM spot setting. I have read that lower KV can make the damage worse because each electron resides in the thin section longer and produced more heat. Is this a tried and true observation?
}
} Thanks!!!
}
} Frank
}
} This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.
}
}
}
} ==============================Original Headers==============================
} 9, 28 -- From frank_karl-at-ardl.com Mon Feb 9 12:15:49 2015
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} 9, 28 -- {microscopy-at-microscopy.com}
} 9, 28 -- Date: Mon, 9 Feb 2015 13:15:26 -0500
} 9, 28 -- Subject: TEM and HIPS
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From: oshel1pe-at-cmich.edu
Date: Mon, 9 Feb 2015 12:48:03 -0600
Subject: [Microscopy] Re: TEM and HIPS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Karl,

Yes to both your questions.
Putting the sections on carbon-coated grids will help with heat
dissipation, and lowering the kV will increase beam damage because of
more beam interactions with your specimens.
We typically use a 10 ľm spot when looking at our thin sections,
especially at lower mags. And spread the illumination.
Maybe try 100 kV.
But - how thick are your thin sections? If they're 100 - 120 nm, try
cutting them 80 - 90 nm. Less beam energy deposition in the thinner
sections. And of course, this being reality, if they're already this
thin (or thinner), try 100 nm sections, as they'll be more robust, and
maybe use the higher kV.
Probably the carbon-coated grids will do the best, but changing kV is easy.

(Hey, it's all quantum - your sections are simultaneously in burst and
unburst states, you just have to pick the ones that collapse to the
unburst state when you observe them.)

Phil

} Hello Everyone,
} I'm looking for suggestions about a beam sensitive sample.
}
} I'm cutting thin sections with a cryomicrotome of HIPS, High Impact Polystyrene, that is toughened with polybutadiene. I'm cutting at -100 C because of the low TG of the polybutadiene and staining with Os.
} My thin sections are very beam sensitive, too sensitive to focus well and get a good image. I'm imaging at 80KV with 8800X magnification. If I spread out my beam to reduce beam damage I can't see my sample to focus and any pictures I take look crappy.
}
} Any suggestions?
}
} I've been thinking about trying carbon coated grids to help act as a heat sink as well as going to a larger TEM spot setting. I have read that lower KV can make the damage worse because each electron resides in the thin section longer and produced more heat. Is this a tried and true observation?
}
} Thanks!!!
}
} Frank
}
} This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: vau-at-ufl.edu
Date: Mon, 9 Feb 2015 17:12:33 -0600
Subject: [Microscopy] anti-catalase 1Ab for TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello All,

Does anyone know of an anti-catalase primary antibody for post-label on
HM20 sections? I have rabbit and mouse 2Ab.
A researcher gave me the ABCAM anti-catalase antibody ab16731 but it was
not tested for TEM and my results were negative.

Any suggestions or recommendations would be greatly appreciated.

Karen Kelley
University of Florida



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From: leunissen-at-aurion.nl
Date: Mon, 9 Feb 2015 19:54:35 -0600
Subject: [Microscopy] Re: anti-catalase 1Ab for TEM

Contents Retrieved from Microscopy Listserver Archives
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Dear Karen,

it may be that it is not the primary that is not working. Do you have positive controls with the secondaries? Catalase is usually so abundant and some molecules would always survive in my opinion, certainly in HM20 preps.
Feel free to contact me or Peter van de Plas (email below) off-list if you would like some ideas on how to take this further.

Thank you and good luck,

Jan Leunissen
Aurion

Aurion ImmunoGold Reagents
Binnenhaven 5
6709 PD Wageningen
The Netherlands

Phone: (+31) 317 415 094
Fax: (+31) 317 415 955
Email: info-at-aurion.nl
Internet: www.aurion.nl

} On 10/02/2015, at 12:12, vau-at-ufl.edu wrote:
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} Hello All,
}
} Does anyone know of an anti-catalase primary antibody for post-label on
} HM20 sections? I have rabbit and mouse 2Ab.
} A researcher gave me the ABCAM anti-catalase antibody ab16731 but it was
} not tested for TEM and my results were negative.
}
} Any suggestions or recommendations would be greatly appreciated.
}
} Karen Kelley
} University of Florida
}
}
}
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From: hyi-at-emory.edu
Date: Mon, 9 Feb 2015 21:41:30 -0600
Subject: [Microscopy] Re: anti-catalase 1Ab for TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, Karen:


I looked up this antibody. It might be helpful if you can share the
protocol you used for sample preparation and immunolabeling. Feel free to
call or email. Thanks.

Hong
Emory EM
404 712 8491
hyi-at-emory.edu

On 2/9/15 6:16 PM, "vau-at-ufl.edu" {vau-at-ufl.edu} wrote:

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From: ALawrence-at-i2at.msstate.edu
Date: Tue, 10 Feb 2015 13:24:46 -0600
Subject: [Microscopy] Southeastern Microscopy Society (SEMS) Annual Meeting

Contents Retrieved from Microscopy Listserver Archives
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Message from the president:

The Southeastern Microscopy Society would like to invite you to join us for the Society's 51st Annual meeting to be held May 20-22, 2015. The meeting will be held at the Courtyard Marriott hotel in downtown Decatur, GA located at 130 Clairemont Avenue. Further, I would encourage you and your students to consider submitting an abstract for a poster or platform presentation at the meeting.

All information regarding the meeting can be found on the SEMS website. Please visit http://southeasternmicroscopy.org/2015-meeting/ for registration and the Call for Papers. All abstracts should be submitted by April 17. Students should be encouraged to present their research through the Ruska competition. Ruska participants receive meeting registration, housing at the meeting hotel (applicants must be willing to share a room with other students), a banquet ticket, and a certificate of participation. The first place Ruska Award winner will receive the Ruska Award plaque and $300.00 at the SEMS banquet. This is great opportunity for students!

The Invited speakers will be Dale Newbury, with NIST; Lucille Giannuzzi, with L.A. Giannuzzi & Associates; and Peter Kner, with the University of Georgia. In addition, Robert Simmons from Georgia State University has agreed to talk about Microscopy and Art for the banquet.

The meeting will start Wednesday, May 20, with workshops and technical talks. Wednesday evening we will have the Mixer and poster session starting at 6 PM. Thursday's schedule contains invited and submitted presentations and opportunities to visit our vendors. The Banquet will be Thursday evening. Plan to attend the Business Breakfast on Friday morning and finish off attending some final presentations, with the meeting ending at noon.

Hotel rooms will cost $129 + tax, and reservations can be made at http://cwp.marriott.com/atldc/sems or by calling the hotel at 404-371-0204 at asking for the SEMS special rate. Reservation must be made by April 28 to receive this rate.

Russ Goddard
SEMS President


Amanda Lawrence
Outreach Coordinator/Research Associate
Institute for Imaging and Analytical Technologies
Mississippi State University



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From: opmills-at-mtu.edu
Date: Tue, 10 Feb 2015 13:53:35 -0600
Subject: [Microscopy] NSF data management plans

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello,

We are submitting a NSF proposal for new equipment and came across a
requirement for a data management plan. At this moment my facility
users are responsible for their own data. I'm interested to find out
what others are using for their data management plans. We are a
"Google" university (Mail/Calendar etc.) - would storing data on their
Drive folder be adequate?

Thanks in advance!

Owen

Owen Mills
Michigan Tech University
Houghton, MI

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From: zaluzec-at-microscopy.com
Date: Wed, 11 Feb 2015 13:45:12 -0600
Subject: [Microscopy] viaWWW:MSNO 2015 Meeting

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Email: nxa157-at-case.edu
Name: Nanthawan Avishai

Organization: MICROSCOPY SOCIETY OF NORTHEASTERN OHIO

Title-Subject: [Filtered] MSNO 2015 Meeting

Message: I'd like to invite you to join MSNO Winter Meeting on
Wednesday, March 4th, 2015, 3:00 –8:30 p.m. at Cleveland Museum of
Natural History.

Lillian A. Kuri from Cleveland Foundation will give a talk on
"Cleveland’s Greater University Circle Initiative"
and John Hemsath, a Director of Theater Operations will give a talk on
"The History of Playhouse Square".

This meeting will give us two successful demonstrations on how
collaboration could make a wonderful impact and we could also make such
a significant impact to our society too.

Pre-registration and more detail could be found at
http://www.msneo.org/2015-winter-meeting.html

We hope to see you at the meeting.

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From: zaluzec-at-microscopy.com
Date: Wed, 11 Feb 2015 13:46:12 -0600
Subject: [Microscopy] viaWWW:HV cable for Ladd sputter coater

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Email: kpseverin-at-alaska.edu
Name: Ken Severin

Organization: University of Alaska Fairbanks

Title-Subject: [Filtered] HV cable for Ladd sputter coater

Message: The HV cable on my old Ladd/Polaron (also sold as ISI and a few
other brands) went up in smoke. If someone has a spare or source (or a
simple sputter coater that is no longer in use) please contact me off
line and we'll work out a deal.

Thanks much!

Ken Severin
University of Alaska Fairbanks
kpseverin-at-alaska.edu

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From: zaluzec-at-microscopy.com
Date: Wed, 11 Feb 2015 13:46:59 -0600
Subject: [Microscopy] viaWWW:Leica Ultracut UCT repair

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Email: kaszas.1-at-osu.edu
Name: Andrea Kaszas

Organization: OSU OARDC

Title-Subject: [Filtered] Leica Ultracut UCT repair

Message: Hi,

We have a Leica Ultracut UCT microtome. It has an error message: 401.

Do you have a suggestion who repairs this machine anymore?

Thanks in advance.

Andrea Kaszas
microscopy technician
OSU/OARDC
Wooster, OH

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From: zaluzec-at-microscopy.com
Date: Wed, 11 Feb 2015 13:47:46 -0600
Subject: [Microscopy] viaWWW:Workshop on Basic Confocal Microscopy

Contents Retrieved from Microscopy Listserver Archives
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Email: bob.price-at-uscmed.sc.edu
Name: Bob Price

Organization: University of South Carolina

Title-Subject: [Filtered] Workshop on Basic Confocal Microscopy

Message: During the week of June 15-19 the University of South Carolina
Instrumentation Resource Facility will again host the "Basic Confocal
Microscopy Workshop." Workshop material is directed towards beginning
and intermediate users of confocal microscopes and involves a series of
lectures (specimen preparation, labeling strategies, proper set-up of
instrument operating parameters, proper handling of 2D and 3D confocal
images in programs such as Adobe Photoshop and AMIRA), hands on specimen
preparation, and time on a number of different point scanning and
spinning disk confocal microscopes.

This is a hands on workshop where participants will stain cells and
tissues with multiple labels, collect images, and participate in image
analysis exercises using Photoshop and AMIRA.

Faculty will include Dr. Jay Jerome of Vanderbilt University, Dr. Ralph
Albrecht of the University of Wisconsin Madison, Dr. John Mackenzie of
North Carolina State University, Dr. Tom Trusk of the Medical University
of South Carolina, and Dr. Bob Price of the University of South
Carolina. Several companies will also have equipment and applications
experts on hand to assist with instrumentation and questions about
confocal microscopy research protocols.

Cost for the entire week is $350 which covers meals and supplies for the
workshop. Please register soon as the workshop has filled the past
several years.

For further information please see: http://irf.med.sc.edu/

For questions and registration contact Anna McNeal
(anna.mcneal-at-uscmed.sc.edu or Bob Price (bob.price-at-uscmed.sc.edu

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From: wtivol-at-sbcglobal.net
Date: Wed, 11 Feb 2015 20:46:35 -0600
Subject: [Microscopy] Re: TEM and HIPS

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On Feb 9, 2015, at 10:30 AM, frank_karl-at-ardl.com wrote:

} Hello Everyone,
} I'm looking for suggestions about a beam sensitive sample.
}
} I'm cutting thin sections with a cryomicrotome of HIPS, High Impact
} Polystyrene, that is toughened with polybutadiene. I'm cutting at
} -100 C because of the low TG of the polybutadiene and staining with
} Os.
} My thin sections are very beam sensitive, too sensitive to focus
} well and get a good image. I'm imaging at 80KV with 8800X
} magnification. If I spread out my beam to reduce beam damage I
} can't see my sample to focus and any pictures I take look crappy.
}
} Any suggestions?
}
} I've been thinking about trying carbon coated grids to help act as a
} heat sink as well as going to a larger TEM spot setting. I have read
} that lower KV can make the damage worse because each electron
} resides in the thin section longer and produced more heat. Is this
} a tried and true observation?
}
} Thanks!!!
}
} Frank
}
} This email and any of its attachments may contain confidential
} information intended only for the use of the addressee(s). If the
} reader of this email is not the intended recipient or the employee
} or agent responsible for delivering it to the intended recipient,
} you are hereby notified that any dissemination or copying of this
} email is strictly prohibited. If you have received this email in
} error, please notify us by return email at info-at-ardl.com,
} permanently delete the email, and destroy any printouts. If this
} email contains test data and/or draft reports, you are hereby
} notified that only a signed original test report will contain
} official results, a copy of which resides in the project folder
} located at ARDL, Inc. Thank you. Akron Rubber Development
} Laboratory, Inc.
}
}
Dear Frank,
Since you have cryosectioning capability, can I assume you have
cryomicroscopy capability? If so, do you have a low-dose capability?
In addition to carbon-coating, you could put a few gold nanoparticles
onto the specimen, use the low-dose settings to find an area a
micrometer or so away from the imaging area, focus pretty quickly on
the gold beads--easier with FEG or very coherent LaB6--then take the
image. You could even burn a small hole at the focussing position
(assuming that the specimen can survive that) without having the beam
overlap the imaging position. If you do not have low-dose capability,
you might try using an image shift setting to get to a focussing area--
calibrate with a cross grating--and return the shift to its original
setting for imaging. All this shifting should be done with a pre-
specimen shutter engaged between shifts to avoid unexpected exposure
of the specimen. Good luck.
Yours,
Bill




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From: zaluzec-at-microscopy.com
Date: Thu, 12 Feb 2015 01:10:34 -0600
Subject: [Microscopy] viaWWW:UCLA Workshop on Imaging Kinetics at the Atomic Level

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Email: rms-at-angstrom.us
Name: Bob Sommerville

Organization: Angstrom Scientific Inc.

Title-Subject: [Filtered] UCLA Workshop on Imaging Kinetics at the
Atomic Level

Message: Wednesday, February 18th at the UCLA California NanoSystems
Institute
570 Westwood Plaza, Building 114
Los Angeles, CA 90095
9:30am: Invited Talks (Executive Conference Room)
1:30pm: Live Demonstrations (Room B145)
Please RSVP to: rms-at-angstrom.us
** Talks will be followed by lunch and then a live demonstration of the
capabilities of the DENSsolutions heating holder on the EICN’s FEI Titan
Krios. We encourage participants to bring samples.
Invited talk by Dr. Paul Voyles
Professor, Materials Science and Engineering, University of
Wisconsin-Madison
Atomic Rearrangements in Glass-Forming Metal Alloys Melted Inside the STEM
Atomic rearrangements in the liquid state are fundamental to
transformations of materials including crystallization and the glass
transition, but they occupy a difficult to access regime of time- and
length-scale. For glass-forming liquids, the relaxation time, which is
the characteristic time for atoms to switch neighbors, ranges from
microseconds or less in the high-temperature equilibrium liquid to
hundreds of seconds in the deeply supercooled liquid near the glass
transition temperature, Tg. The length scale is likely to be on the
nanometer to sub-nanometer scale, but is largely unknown. We have used
time-resolved coherent electron nanodiffraction in the STEM to measure
for Pd40Ni40P20 alloy in the supercooled liquid from Tg to Tg + 40 K
with 2 nm spatial resolution. This new experimental technique, called
electron correlation microscopy, is the electron equivalent of x-ray
photon correlation spectroscopy, but at higher spatial resolution. It is
made possible by recent advances in electron microscope instrumentation,
including highly coherent electron sources, high stability heating
holders, and fast electron detectors.
Additional presentations:
 Material’s kinetics at the atomic level
Eric Kievit, Director of Sales, DENSsolutions
 Revealing sintering behavior of SiC nanoparticles by in-situ
heating HRTEM
Dr. Lianyi Chen, Department of Mechanical and Aerospace Engineering, UCLA
DENSsolutions Provides Sample Management Solutions for in-Situ Electron
Microscopy
Angstrom Scientific Inc. is a US Distributor providing characterization
solutions to the nanotech marketplace. Angstrom supports DENS throughout
the US as well as other principals such as Kleindiek and Hitachi for
Tabletop TM 3030 SEM's and for key products and accessories related to
TEM, SEM and Dual Beam markets

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 12 Feb 2015 16:59:46 -0600
Subject: [Microscopy] viaWWW:M&M 2015 Family Affair ProjectMICRO and Foldscopes

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Email: ech-at-uvic.ca
Name: Elaine Humphrey

Organization: University of Victoria

Title-Subject: [Filtered] M&M 2015 Family Affair ProjectMICRO and Foldscopes

Message: Dear All
Last year in Hartford at the M&M the Solve the Mystery was based on the
story:
Secret Agent, James B Atom, wrote a message for Headquarters. It was
written on a FIB and could only be read on an sem (too small for a light
microscope. It was cut into four pieces and your task should you choose
to accept it, is to take your piece of the message to the Q's lab
(Exhibit Hall where we have some vendors to work with you) to read it.
Once deciphered you should take it to Headquarters (the Outreach Booth)
where it will be put together.

The message read "Never trust an Atom, they make up everything"

Everyone who attended seemed to particularly enjoy this bit, so I was
thinking of doing it again but with a different message. Any ideas?

Also I put our name down for some Foldscopes (origami microscopes) which
have just arrived and I intent to bring them to the Family Affair at
M&M. I hope to have one at the Outreach booth too.
http://www.foldscope.com/

The Project Micro workshop since we will be in Portland, will be the
ever popular "The Private Eye workshop"
http://the-private-eye.com/index.html
This is one of the best outreach workshops to help Elementary School
Teachers get sucked into Science even though they may be intimidated by
Science. They use a 5x loupe.



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From: steven.spurgeon-at-pnnl.gov
Date: Thu, 12 Feb 2015 17:46:39 -0600
Subject: [Microscopy] Logging and keeping track of TEM samples

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello everyone,

Išm sure this question has been asked many times before, but I wanted to
see if people might share their systems for keeping track of TEM samples.
In grad school it wasnšt too bad, since I was focused mainly on my own
samples, but now Išve been deluged with samples from many different
projects.

Išm considering using Evernote in combination with a naming and tracking
scheme, but Išm open to other options as well.

Thanks!
__________________________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate
Pacific Northwest National Laboratory

Tel: +1-509-371-7123
Email: steven.spurgeon-at-pnnl.gov
Web: www.pnnl.gov {http://www.pnnl.gov/}



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7, 26 -- From: "Spurgeon, Steven R" {steven.spurgeon-at-pnnl.gov}
7, 26 -- To: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
7, 26 -- Subject: Logging and keeping track of TEM samples
7, 26 -- Thread-Topic: Logging and keeping track of TEM samples
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From: les-at-zsgenetics.com
Date: Fri, 13 Feb 2015 08:23:17 -0600
Subject: [Microscopy] Logging and keeping track of TEM samples

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steven,
X-from my experience, having good tracking, a naming method and physical
storage for samples is key. I would suggest going beyond a simple text file,
as this becomes unwieldy quickly. A database can be as simple as a
spreadsheet, with columns for all the parameters of interest and links to
image storage locations. A spreadsheet can be filtered and searched and
doesn't require any programming - unless you need to do a real database for
PNNL tracking or billing. Set viewing and editing permissions so that only
those you trust to enter data properly can make changes. A physical
organizer for grid boxes, with names that relate to your database for
getting at them later if desired, is really helpful.
Good luck!
Regards,
Larry Scipioni
ZS Genetics

-----Original Message-----
X-from: steven.spurgeon-at-pnnl.gov [mailto:steven.spurgeon-at-pnnl.gov]
Sent: Thursday, February 12, 2015 6:57 PM
To: LES-at-ZSGENETICS.COM

Hello everyone,

Išm sure this question has been asked many times before, but I wanted to see
if people might share their systems for keeping track of TEM samples.
In grad school it wasnšt too bad, since I was focused mainly on my own
samples, but now Išve been deluged with samples from many different
projects.

Išm considering using Evernote in combination with a naming and tracking
scheme, but Išm open to other options as well.

Thanks!
__________________________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate Pacific Northwest
National Laboratory

Tel: +1-509-371-7123
Email: steven.spurgeon-at-pnnl.gov
Web: www.pnnl.gov {http://www.pnnl.gov/}



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From: nsa2-at-leicester.ac.uk
Date: Fri, 13 Feb 2015 09:16:54 -0600
Subject: [Microscopy] Logging and keeping track of TEM samples

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steven,

We give each project a unique project number, which is incorporated into sample labels, processing records and image records, as well as a project database (currently Filemaker pro) so every step can be traced back to the project. Ours is prefixed by an identifying code, followed by the financial year, followed by the project number - ie, EMLP 14-15.037

The database includes client name, department (or company), order number, brief description of work, financial details etc etc. Each project has a processing protocol and job summary that is filed in a folder headed with the corresponding project number.

This way, as long as you've got the project number, you can refer back to any sample.

We also give each image a unique image number for the same reason.

All the best,

Natalie


Miss Natalie Allcock
CBS Electron Microscopy Facility
University of Leicester

http://www2.le.ac.uk/colleges/medbiopsych/research/cbs/eml/electron-microscopy




-----Original Message-----
X-from: steven.spurgeon-at-pnnl.gov [mailto:steven.spurgeon-at-pnnl.gov]
Sent: 12 February 2015 23:58
To: Allcock, Natalie S.

Hello everyone,

Išm sure this question has been asked many times before, but I wanted to see if people might share their systems for keeping track of TEM samples.
In grad school it wasnšt too bad, since I was focused mainly on my own samples, but now Išve been deluged with samples from many different projects.

Išm considering using Evernote in combination with a naming and tracking scheme, but Išm open to other options as well.

Thanks!
__________________________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate Pacific Northwest National Laboratory

Tel: +1-509-371-7123
Email: steven.spurgeon-at-pnnl.gov
Web: www.pnnl.gov {http://www.pnnl.gov/}



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From: eric-miller-at-northwestern.edu
Date: Fri, 13 Feb 2015 17:02:19 -0600
Subject: [Microscopy] IMIX-PC EDS by PGT

Contents Retrieved from Microscopy Listserver Archives
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We've got an old Model 8000 IMIX PC EDS system lying around made by Princeton Gamma Tech and we were wondering if anyone might need it for spare parts, or whatever. Let us know.



ERiC Jay Miller
Microscopy & Imaging Specialist
Electron Probe Instrumentation Center

Northwestern University
Mail: 2036 Cook Hall
Office: 1152 Cook Hall
2220 Campus Drive
Evanston, IL 60208-3108

ph: (847) 467-0789

http://www.nuance.northwestern.edu



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From: frank_karl-at-ardl.com
Date: Wed, 18 Feb 2015 07:12:05 -0600
Subject: [Microscopy] Thanks !!!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I want to thanks all the advice I received about cutting cryothin sections of HIPS. The carbon coated grids worked great as did increasing the KV to 100. I stained my thin sections on the grids with OsO4 vapor for two hours and that made the phase really "POP!"

Thanks again. Now I'm hip about HIPS.


Frank


PS, I just really want more out of office remarks, it's like cowbell, how can you have too much!!!

This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.



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From: microscopy.listserver-at-gmail.com
Date: Fri, 20 Feb 2015 01:28:46 -0600
Subject: [Microscopy] viaWWW:LEO 1455VP LaB6

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X-from: gary-at-gaugler.com

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Email: gary-at-gaugler.com
Name: Dr. Gary Gaugler

Organization: Microtechnics

Title-Subject: [Filtered] LEO 1455VP LaB6

Message: Has anyone with a LEO/Zeiss 1455VP LaB6 SEM compared the
Wehnelt aperture sizes? They are 1mm and 500um. Zeiss seems to have
settled on the 500um Wehnelt aperture size for LaB6 and W emitters.

Is there any feedback from users about which aperture size produces the
best results?

TIA,
gary g.


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From: microscopy.listserver-at-gmail.com
Date: Fri, 20 Feb 2015 01:29:05 -0600
Subject: [Microscopy] viaWWW:Position open at NIH

Contents Retrieved from Microscopy Listserver Archives
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X-from: connellyps-at-mail.nih.gov

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Email: connellyps-at-mail.nih.gov
Name: Pat Connelly

Organization: NIH/National Heart, Lung and Blood Institute

Title-Subject: [Filtered] Position open at NIH

Message: There is an opening in the National Heart, Lung and Blood
Institute in Bethesda, MD for an
"Electron Microscopy Senior Scientist and/or Core Director".

The posting is listed on the MSA Site [Resources} Placement Office/Job
Openings] as Job ID 22114004 with a full detailed description and
application directions.

The job requirements state that applicants must have a PhD. (or
equivalent) and be an experienced scientist with significant experience
in many aspects of electron microscopy and a record of independent
scientific productivity as evidenced by citable publications.
Experience with correlative light/EM imaging, novel methods development,
digital image processing and analysis, cryo-EM, and 3D EM methods are
highly desirable. Excellent interpersonal skills are a requirement.

I believe that the same posting is also on the ASCB Job Board.

This message would not go through the List Server as I usually post with
plain text.

Pat
Patricia Stranen Connelly
Research Assistant
NHLBI EM Core Facility
National Institutes of Health
Building 14E Room 111B
Bethesda, MD 20892-5570
301-496-3491
connellyps-at-mail.nih.gov

http://www.nhlbi.nih.gov/research/intramural/researchers/core/electron-microscopy-core/index.html



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From: tkremer-at-ipstesting.com
Date: Fri, 20 Feb 2015 14:08:04 -0600
Subject: [Microscopy] Emitech K-450

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Does anyone have a schematic diagram of the electronics in the Emitech K-450 carbon coater? This is NOT the K-450X which is a later version. It appears that a part failed somewhere between the pirani gauge and the meter. Having the electrical diagram just might help with tracking it down.

Tom Kremer
IPS Testing
3211 E. Capitol Drive
Appleton, WI 54911
920-749-3040 ext.121
tkremer-at-ipstesting.com



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From: Karen_Bentley-at-URMC.Rochester.edu
Date: Mon, 23 Feb 2015 12:37:08 -0600
Subject: [Microscopy] Clinical EM job opening

Contents Retrieved from Microscopy Listserver Archives
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At the University of Rochester Medical Center's Pathology Department in Rochester, NY we are looking to replace our retiring Kidney EM Clinical Laboratory Specialist..

Please contact Karen Bentley if you have any questions about this clinical position or you can go to the University of Rochester Medical Center's website and at the bottom of the page listed under URMC Information is the "Job Opportunities" link which will lead you to the jobs, type in # 185704.

This position requires sufficient knowledge to run the day-to-day operations of both the Transmission Electron Microscope (TEM) and Immunofluorescent (IF) laboratories, under supervision of the Medical Director of Renal EM and Autopsy who is responsible for those laboratories. Required skills, which can be acquired during the initial on the job training, include knowledge of normal and abnormal ultrastructural and immunofluorescence morphology.

Bachelor's degree in Clinical Laboratory Science and one year of experience; or an equivalent combination of education, experience or certification as required for New York State licensure. Experience in field of electron microscopy, renal pathology strongly preferred, but on the job training will be provided to the right candidate.

Karen Bentley, M.S.
Director
Electron Microscope Research Core
Pathology & Laboratory Medicine
University of Rochester Medical Center
575 Elmwood Avenue
Rochester, NY 14642
585-275-1954



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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 24 Feb 2015 15:22:22 -0600
Subject: [Microscopy] viaWWW:Need your input of diamond knife

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Gary

Wehnelt apertures are usually selected depending upon the application. High
magnification operations are best made with a small aperture, with the
filament closer to the front of the Wehnelt, where as for low magnification
work, moving the filament back, and using a larger aperture, provides
sufficient performance with longer filament life. Those carrying out a
large amount of BSE investigations will also be better served using a larger
aperture as bigger sources provide higher signals.

Most manufacturers use a smaller Wehnelt aperture than for tungsten, when
LaB6 filaments are fitted, as stronger bias fields are required to control
the source.

Enjoy

Steve

Steve Chapman FRMS
Protrain for Consultancy and Courses in Electron Microscopy
Mobile +44 (0) 7711 606967 Fax +44 (0)1280 814007
www.emcourses.com

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Email: hu.duan-at-averydennison.com
Name: Hu Duan

Organization: Avery

Title-Subject: [Filtered] Need your input of diamond knife

Message: Dear microscopists:

I would like to seek you experience about diamond knife. We used to use DDK diamond knife to do cryo
sectioning and polishing of soft polymers. Due to supply issue, we would like to switch to another
supplier.

With consideration of comparable price and performance, what would you recommend for the
replacement? Or which brand/type of diamond knife you have been satisfied with cryo sectioning of
soft polymers? Thank you very much.

Hu

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 24 Feb 2015 15:23:18 -0600
Subject: [Microscopy] viaWWW:Northern California Society for Microscopy Spring Meeting

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Email: rcsencsits-at-lbl.gov
Name: Roseann Csencsits

Organization: Lawrence Berkeley Laboratory

Title-Subject: [Filtered] Northern California Society for Microscopy Spring Meeting

Message: The NCSM spring meeting will be on Thursday, March 19 at Gatan in Pleasanton.

Please join us for dinner and excellent speakers: Ilke Arslan, of PNNL and Brigitte
Papahadjopoulos-Sternberg, of NanoAnalytical Lab.

Additional details are on our website: www.ncsmicroscopy.org

We hope to see you on March 19!


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 24 Feb 2015 15:24:12 -0600
Subject: [Microscopy] viaWWW:SEM- Quanta 200 3D Control board

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Email: youssef.chebli-at-yahoo.ca
Name: Youssef Chebli

Organization: University of Montreal

Title-Subject: [Filtered] SEM- Quanta 200 3D Control board

Message: Hi,

We are facing a problem with our FEI Quanta 200 3D (MK1 model).
The microscope is extremely slow to respond to the software commands and sometimes never responds at
all and the software freezes. When the scope does respond, the pumps stop working after 2 minutes of
pumping and\or it is impossible to give any command to the microscope afterward.
The FEI maintenance service informed us that we would have to replace the main controller board
(PCB, CB2/OPTD) and\or the vaccum control board (PCB, VCB).

Did you experience this kind of problems before? How was it solved? Also, would you know of any used
PCB CCB2/OPTD
or VCB (from a discarded Quanta 200 3D, MK1) for sale?

Thanks a lot for your help!

Youssef


--------------------------------------
Youssef Chebli, PhD
Microscopy and Imaging facility operational manager
Institut de recherche en biologie végétale (514 343 6111 #82122)
Department of anthropology (514 343 6111 #26901)
Université de Montréal

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From: CGorman-at-hookecollege.com
Date: Wed, 25 Feb 2015 14:03:52 -0600
Subject: [Microscopy] Electron Microscopy Short Courses

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Greetings,

Hooke College of Applied Sciences, located in Westmont, IL, is offering two courses in electron microscopy.

Scanning Electron Microscopy short course March 23-27, 2015
Transmission Electron Microscopy short course April 7-9, 2015

In addition to lectures, these courses emphasize hands-on training using state-of-the-art equipment.

For further training details and registration information, please follow the link below:
http://www.hookecollege.com/



Best regards-
__________________________________________________
Chris Gorman
Hooke College of Applied Sciences
850 Pasquinelli Drive
Westmont, IL 60559-5539 USA
630-887-7100 (tel)
630-887-7412(fax)


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 25 Feb 2015 18:34:55 -0600
Subject: [Microscopy] viaWWW:LEO 435 VP light panel error

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Email: mitch.kupferman-at-usa.dupont.com
Name: mitchell kupferman

Title-Subject: [Filtered] LEO 435 VP light panel error

Message: Hi Group!!
I have a Leo 435 VP SEM and recently had some imaging problems. I noticed that on the light panel
on the back of the instrument, lights #7 and 9 are blinking when the beam is on, but not when it is
off or on standby.
I know this is an older instrument but does anyone know what these lights indicate (i.e. what
circuit board or power supply has failed)?

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From: brachfelds-at-mail.montclair.edu
Date: Thu, 26 Feb 2015 11:32:04 -0600
Subject: [Microscopy] Hardware and software for remote viewing of SEM and TEM displays

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Dear colleagues-
As part of a pitch to install remote viewing / webinar capabilities in our microscopy lab, my administration as asked me to find example systems and collect information to help us optimize and balance our wants, needs, and costs. If you have an electron microscope that you can remotely view, remotely operate, send the display output to a classroom, send the display outside your institution's network for a webinar, etc. and are willing to answer some questions about components and costs would you please contact me at brachfelds-at-mail.montclair.edu.
Thank you for your time and your help,
Stefanie

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From: zaluzec-at-aaem.amc.anl.gov
Date: Fri, 27 Feb 2015 07:58:46 -0600
Subject: [Microscopy] Re: Telepresence 20 years later: Hardware and software for remote viewing of SEM and TEM displays

Contents Retrieved from Microscopy Listserver Archives
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Stefanie

You can also look at this site.

http://telepresencecollaboratory.org

Telepresence Collaboration which is fairly old. We started
doing it at ANL when the Mosaic WWW browser first appeared ~ 1994.

There are also a few old PDF's of Lectures here:

http://tpm.amc.anl.gov/Lectures/

Today, there are numerous solutions that update these older protocols.

To be honest, because of network safety (i.e. hacker) issues, I no longer allow remote control, only
passive observation. I would caution you that you will need to do the same. All publically
accessible sites get attacked. You don't want to know how many hackers try to
break into the Microscopy Listserver every DAY.

Nestor
Your Friendly Neighborhood SysOp



On Feb 26, 2015, at 11:32 AM CST, brachfelds-at-mail.montclair.edu wrote:

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} Dear colleagues-
} As part of a pitch to install remote viewing / webinar capabilities in our microscopy lab, my administration as asked me to find example systems and collect information to help us optimize and balance our wants, needs, and costs. If you have an electron microscope that you can remotely view, remotely operate, send the display output to a classroom, send the display outside your institution's network for a webinar, etc. and are willing to answer some questions about components and costs would you please contact me at brachfelds-at-mail.montclair.edu.
} Thank you for your time and your help,
} Stefanie
}
} ==============================Original Headers==============================
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===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
NanoScience and Technology Division
9700 S. Cass Ave
Bldg 212 / A-143
Argonne, Illinois 60439 USA
Email: Zaluzec-at-aaem.amc.anl.gov


Tel: 530-NES-TORZ (530-637-8679) has Voice Mail
Lab: 630-252-7901
Fax: 630-252-4798

iChat: Zaluzec-at-AIM.com
Skype: Zaluzec
Polycom: 146.139.72.119
TPM: http://tpm.amc.anl.gov


Senior Scientist - Argonne National Laboratory
Fellow of the Microscopy Society of America
Senior Fellow the Computational Institute - University of Chicago
E.P. Wigner Fellow - Oak Ridge National Laboratory
Past President Microscopy Society of America
Adjunct Professor of Physics - Northern Illinois University &
the University of Illinois at Chicago
Visiting Professor of Microscopy - Manchester University

===========================================
TPMLab: http://tpm.amc.anl.gov
MMSite: http://www.amc.anl.gov
===========================================

The box said ...
"This program requires Win 95/98/NT or better..."
So I bought a Mac !

===========================================



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From: donc-at-asmicro.com
Date: Fri, 27 Feb 2015 16:50:08 -0600
Subject: [Microscopy] Collagen Microscopy

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Francoise Marga asked about imaging collagen fibers by SEM. ASM has been
working with collagen fibers and monomers for over 20 years, imaging them
using AFM(atomic force microscopy). The example images found on our website
at:

http://www.asmicro.com/Applications/Collagen_Monomers.htm

www.asmicro.com/Applications/collagen_fibers.htm

show that AFM can image individual polymer molecules and can show subtle
height variations in the fibers.

I suggest that AFM be considered for the needed analysis.



Disclosure: ASM is an independent analytical service laboratory specializing
in Atomic Force Microscopy and related Scanning Probe Microscopy techniques.



regards,
Don
=============================================
Don Chernoff, Ph.D., President
Advanced Surface Microscopy, Inc.; 3250 N. Post Rd., Suite 120;
Indianapolis IN 46226 USA
E-Mail: donc-at-asmicro.com www.asmicro.com
Voice: 317-895-5630 Toll free: 800-374-8557 (in USA & Canada)
Fax: 317-895-5652
[business activities since 1990: analytical services in AFM, AFM probes,
consulting, training, calibration and test specimens,
calibration and measurement software, used NanoScope equipment.]
=============================================

----- Original Message -----
From: oshel1pe-at-cmich.edu
To: donc-at-asmicro.com
Sent: Monday, January 12, 2015 4:59 PM
Subject: [a] [Microscopy] Ask-A-Microscopist: SEM service available in
Brooklyn NY area for





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Realname - Francoise Marga
Email - fmarga-at-modernmeadow.com
ORGANIZATION - Modern Meadow
EDUCATION - Graduate College
LOCATION - Brooklyn, NY, USA
SUBJECT_OF_QUESTION - SEM in NYC
QUESTION - Hi,

Our company would like to look at our samples by SEM. We need to go up
x15,000 to visualize collagen fibers. As a business, we have trouble to
find a SEM accessible to a private company. Does anyone know a facility
or a private service in our area (Brooklyn, NY) that could help us.
Thanks for your help. Kind regards,

Francoise



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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 28 Feb 2015 08:02:15 -0600
Subject: [Microscopy] viaWWW: Preventing charging in a TEM

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Email: debangshu-at-psu.edu
Name: Debangshu Mukherjee

Organization: The Pennsylvania State University

Title-Subject: [Filtered] Preventing charging in a TEM

Message: Hello,
Does anybody use a coater to coat ceramic TEM samples with a very thin layer to mitigate charging?
I would also be happy to know if there are any other ways to stop charging of samples. I am looking
at manually polished complex oxide samples.
Thanks!
---------------------------------------------
Debangshu Mukherjee
Materials Research Institute
The Pennsylvania State University
N-303 Millennium Science Complex
University Park, PA 16802-2130
Phone: (617) 501-7316
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From: colijn.1-at-osu.edu
Date: Sat, 28 Feb 2015 11:52:08 -0600
Subject: [Microscopy] Re: viaWWW: Preventing charging in a TEM

Contents Retrieved from Microscopy Listserver Archives
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Debangshu,

We've had good luck putting down a few nm (usually 3nm on our system) of
Carbon to mitigate charging and to stabilize the formvar films our bio
friends make. If you are doing atomic resolution STEM, make sure the C
is on the bottom side.

Cheers,
Henk


On 2/28/2015 9:05 AM, microscopylistserver-noreply-at-microscopy.com wrote:
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} I would also be happy to know if there are any other ways to stop charging of samples. I am looking
} at manually polished complex oxide samples.
} Thanks!
} ---------------------------------------------
} Debangshu Mukherjee
} Materials Research Institute
} The Pennsylvania State University
} N-303 Millennium Science Complex
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--

Hendrik O. Colijn

*C*enter for *E*lectron *M*icroscopy & *A*nalysi*S*

1305 Kinnear Rd, Suite 100, Columbus, OH 43212

colijn.1-at-osu.edu {mailto:colijn.1-at-osu.edu} 614.643.3458 Office

cemas.osu.edu

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."


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From: protrain-at-emcourses.com
Date: Mon, 2 Mar 2015 04:51:26 -0600
Subject: [Microscopy] viaWWW: Preventing charging in a TEM

Contents Retrieved from Microscopy Listserver Archives
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Hi Guys

I assume that Debangshu is using the highest accelerating voltage that he
can with his instrument, and probably small condenser apertures and spot
sizes.

Steve

Steve Chapman FRMS
Protrain for Consultancy and Courses in Electron Microscopy
Mobile +44 (0) 7711 606967 Fax +44 (0)1280 814007
www.emcourses.com

This email is intended for the person or company named and access by anyone
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From: eikonika-at-otenet.gr
Date: Wed, 4 Mar 2015 01:07:22 -0600
Subject: [Microscopy] strong adhesive mounting tape for SEM specimens

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Hello
Since the 90ies I use double sided adhesive tape for mounting SEM specimens
and remember how strong these early tapes were. The last years I tried many
different suppliers and all (carbon or copper) tapes I get are not very
sticky, resulting in charging and beam instability problems that gives a
headache.
Anybody knows where to get a double sided adhesive tape for mounting SEM
specimens that is really sticky?
Thanks

yorgos

Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
************************************


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From: s.walck-at-comcast.net
Date: Wed, 4 Mar 2015 03:30:30 -0600
Subject: [Microscopy] Auto-Termination Script for PIPS II

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I have a Gatan PIPS II system with Digital Micrograph.  Does anyone know if there is a DM script available that can auto-terminate the ion milling process when perforation occurs? 
 

-Scott Walck


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 4 Mar 2015 06:02:44 -0600
Subject: [Microscopy] viaWWW:Endowed support staff position - Microbeam specialist - available

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Email: jarmstrong-at-ciw.edu
Name: JOHN T ARMSTRONG

Organization: Carnegie Institution of Washington - Geophysical Laboratory

Title-Subject: [Filtered] Endowed support staff position - Microbeam specialist - available

Message: CARNEGIE INSTITUTION OF WASHINGTON - Vacancy Announcement –Microbeam Specialist

The Microbeam Specialist will work at the Geophysical Laboratory location in Washington, D.C.

Job Description:

The primary responsibility is to maintain and operate focused ion beam - scanning electron
microscope (FIB-SEM) crossbeam system and other microbeam instruments, including training and
providing assistance to new and visiting users, performing routine maintenance, sample preparation,
and collaborating with staff and students. As a member of the electronics/microbeam analysis center,
the person is expected to work with existing microbeam members to maintain smooth operation of the
facility. The Laboratory supports world-class facilities in high-pressure research; organic, stable
isotope and biogeochemistry; mineral physics and petrology; and astrobiology. See
https://www.gl.ciw.edu/ for a listing of its research programs and facilities.

See details at https://www.gl.ciw.edu/content/2015/2/26/microbeam-specialist


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From: oshel1pe-at-cmich.edu
Date: Thu, 5 Mar 2015 07:14:29 -0600
Subject: [Microscopy] Re: Ask-A-Microscopist

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} realname - Paul Webster
} Email - pwebster-at-usc.edu
} EDUCATION - Graduate College
} LOCATION - Pasadena, CA 91107, USA
} SUBJECT_OF_QUESTION - Critical Point Dryer
} QUESTION - Dear All,
}
} I have an old Balzers Union critical point dryer FL 9496 that has been working well until now.
}
} The problem is that the lid of the chamber has started to leak. It may just need a gasket, but I have no idea where I could get one.
}
} Does anyone have information on where I could find a gasket for this part. Failing that, a source for a new lid would be welcome.
}
} Perhaps Technotrade is still out there and has parts for these old machines.
}
} Regards,
}
} Paul
}
} Paul Webster, Ph.D.
}
}



==============================Original Headers==============================
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From: PhillipsT-at-missouri.edu
Date: Thu, 5 Mar 2015 08:33:37 -0600
Subject: [Microscopy] microscopy in today's doodle

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Don't miss the doodle honoring Momofuku Ando on the Google homepage today. There are different versions but at least one features him working at a microscope! He is presumably looking at the microscopic pores in the ramen noodles that result from flash frying and allows their rapid rehydration upon adding boiling water. Many a hungry grad student slaving over a microscope owes him a debt.

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/



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From: W.Muss-at-salk.at
Date: Thu, 5 Mar 2015 08:52:46 -0600
Subject: [Microscopy] Re: Ask-A-Microscopist: Critical Point Dryer (Spare

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Dear Paul,
Dear Phil,
Dear all,

The only posibility - I guess - to get any spare part for a Balzers CPD of old vintage in Europe (I know of, last correction in my PAB done: 2012/07) would be:
=====
Info distributed by PROVAC, former supplier for BALZERS instruments and spare-parts: Date: 6 Nov 2009
"As of October 15th 2009 Baltic Präparation, Niesgrau/Germany takes over the business of Consumables for the Electron Microscopy Preparation Tecnology from Provac AG, Balzers.
For many years Provac AG was a reliable partner for sales of consumables for the Elctron Microscopy Preparation Technology and we would like to thank our customers for the good cooperation and the trust in our company. Mrs. Claudia Köster from BALTIC PRÄPERATION will be the new contact for any future inquiries.
For further information please contact:
Mrs. Claudia Köster
Baltic Präparation
Koppelheck 34B
D-24395 Niesgrau
Germany
Phone: +49 4643 18 65 43
e-mail: baltic.praeparation-at-t-online.de "

as of the (BALTIC) German website 2015-03-05:
Postal address:
Baltic Präparation
Postfach 1116
D-24393 Koppelheck
Fon 04643/186543
Fax 04643/186554
e-mail: baltic.praeparation-at-t-online.de
or php-form at http://www.baltic-praeparation.de/kontakt.html

I found only a Website in GERMAN . cf: www.baltic-praeparation.de which (since 2012) still is "under construction"
cf also : Products 2009 (lacking any description of a CPD-FL 9496):
http://www.baltic-praeparation.de/index.php?file=tl_files/pdfs/procac2.pdf

Not knowing how they perform nowadays.... but I think it would be worth a try to request for the spare part.
Best wishes, good luck, and
my best regards,
Wolfgang

Wolfgang MUSS
EM-Lab, Univ.Inst.PATHOLOGY,
SALK-LKH (Gen. Hospital) and PMU SALZBURG
SALZBURG, AUSTRIA

================================================================================

Von: oshel1pe-at-cmich.edu [mailto:oshel1pe-at-cmich.edu]
Gesendet: Donnerstag, 05. März 2015 14:23
An: Muß Wolfgang
Betreff: [Microscopy] Re: Ask-A-Microscopist: Critical Point Dryer (Spare parts for: BALZERS FL 9496)

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} realname - Paul Webster
} Email - pwebster-at-usc.edu
} EDUCATION - Graduate College
} LOCATION - Pasadena, CA 91107, USA
} SUBJECT_OF_QUESTION - Critical Point Dryer
} QUESTION -
}
} Dear All,
} I have an old Balzers Union critical point dryer FL 9496 that has been working well until now.
}
} The problem is that the lid of the chamber has started to leak. It may just need a gasket, but I have no idea where I could get one.
}
} Does anyone have information on where I could find a gasket for this part. Failing that, a source for a new lid would be welcome.
}
} Perhaps Technotrade is still out there and has parts for these old machines.
}
} Regards,
}
} Paul
}
} Paul Webster, Ph.D.



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15, 43 -- Subject: [Microscopy] Re: Ask-A-Microscopist: Critical Point Dryer (Spare
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From: jimk-at-floraresearch.com
Date: Thu, 5 Mar 2015 18:06:57 -0600
Subject: [Microscopy] microscopy in today's doodle

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I survived for almost half a decade on raman noodles and learned many ways to make them including stir frying with Napa cabbage and veggies to at least pretend that it was a different dinner than the last 4000 raman noodle dinners I had. The generic ones were 8 for one buck and between that and bulk pinto beans, we managed to survive on our meager food budget which was inadequate to pay for all the beer we drank and the food too. :)

Sincerely,

James Neal-Kababick
Director
Flora Research Laboratories, LLC
An FDA and DEA Registered & Inspected Laboratory
Fellow AOAC International
Vice Chair USP {2251} ADSDDA Expert Panel
Adjunct Faculty Bastyr University
Botanical Medicine Department
1-541-472-0980 phone
jimk-at-floraresearch.com
www.floraresearch.com


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-----Original Message-----
X-from: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
Sent: Thursday, March 05, 2015 6:58 AM
To: James Neal-Kababick

Don't miss the doodle honoring Momofuku Ando on the Google homepage today. There are different versions but at least one features him working at a microscope! He is presumably looking at the microscopic pores in the ramen noodles that result from flash frying and allows their rapid rehydration upon adding boiling water. Many a hungry grad student slaving over a microscope owes him a debt.

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/






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From: marksmsa-at-gmail.com
Date: Thu, 5 Mar 2015 18:50:53 -0600
Subject: [Microscopy] From Tribology to Hip Implants: Postdoctoral Position

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A Postdoctoral position in immediately available at Northwestern
University in the group of L. D. Marks (www.numis.northwestern.edu) to
work in the area of tribology at the nanoscale with spillover into
issues related to hip implants such as tribocorrosion and wear. While
most of the work will be materials science based, aspects of it will
involve collaborations with orthopedic and dental researchers and
doctors. Strong experimental skills in transmission electron
microscopy are essential, and experience with using Nanofactory
holders (both STM and AFM) would be significant. While a background in
metallurgy could be useful, it is not essential; more important is the
ability to learn and think outside the box.

Please send a CV and the name of three referees to L. D. Marks
L-marks-at-northwestern.edu, email only.


--
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu
Corrosion in 4D: MURI4D.numis.northwestern.edu
Co-Editor, Acta Cryst A
"Research is to see what everybody else has seen, and to think what
nobody else has thought"
Albert Szent-Gyorgi

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 7 Mar 2015 09:56:30 -0600
Subject: [Microscopy] viaWWW:SEM - Recommendation on C-coater, CL detector

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X-from: mattinson-at-geology.cwu.edu

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Email: mattinson-at-geology.cwu.edu
Name: Chris Mattinson

Organization: Central Washington University

Title-Subject: [Filtered] SEM - Recommendation on C-coater, CL detector

Message: We are looking to buy a C-coater to be used with a FE-SEM, and would be grateful for your
comments/experiences with C-coaters such as Cressington 208C, Denton Desk V, Quorumtech Q150T, or
others you may recommend. Our coater would primarily be used to prepare geological samples for EDS
analysis and mapping, including quantitative EDS analysis using standards and beam current
measurement, so the evenness and reproducibility of the coating are important.

Also, we are considering the Centaurus CL detector for the SEM, and would appreciate input from
anyone who has experience with this detector.

Thanks,
Chris Mattinson
Central Washington University

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 7 Mar 2015 09:57:11 -0600
Subject: [Microscopy] viaWWW:position available - Microscopy Technician

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Email: schenderson-at-vcu.edu
Name: Scott Henderson

Organization: Virginia Commonwealth University

Title-Subject: [Filtered] position available - Microscopy Technician

Message: Microscopy Technician

A technical position is available in the Microscopy Facility of the Department of Anatomy and
Neurobiology in the School of Medicine at Virginia Commonwealth University. The facility houses
confocal (laser scanning & spinning disc), multi-photon, TIRF, super-resolution / SIM and electron
microscopes (TEM & SEM). The successful candidate will assist with microscopy studies of various
biological systems. Duties include assisting users of the facility, providing basic instruction in
the use of equipment within the facility (i.e. microscopes, microtomes, and image analysis
programs), sample preparation (e.g. sectioning, staining), minor equipment maintenance and some
administrative work (ordering of supplies and monthly billing). Applicants should have excellent
communication and organizational skills, an understanding of laboratory procedures, and the ability
to manage a large and varied workload. Minimum qualifications include a bachelor’s degree in Science
(with a concentration in Biology), previous hands-on experience with advanced light microscopy (e.g.
confocal), electron microscopy, sample preparation (including sectioning), and image analysis.
Computer skills are essential.

To apply, go to the VCU Jobs website at: https://www.vcujobs.com/

Click the Search Postings tab. The position number is 551220.

--------------------------

Scott Henderson, Ph.D.
Director, VCU Microscopy Facility
Associate Professor
Dept. Anatomy & Neurobiology
Virginia Commonwealth University
School of Medicine
1101 East Marshall St.
Richmond, VA 23298-0709


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 7 Mar 2015 09:58:11 -0600
Subject: [Microscopy] viaWWW:Room Temperature Epoxy

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Email: debangshu-at-psu.edu
Name: Debangshu Mukherjee

Organization: The Pennsylvania State University

Title-Subject: [Filtered] Room Temperature Epoxy

Message: Hello,
I am preparing cross-sectional TEM samples of pyroelectric materials, which crack when I am curing
my epoxy. It would be great if anyone can point me towards recommended examples of room-temperature
epoxies available.
Thanks!

Debangshu Mukherjee
PhD candidate
MatSE, Penn State

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From: wtivol-at-sbcglobal.net
Date: Sat, 7 Mar 2015 18:49:26 -0600
Subject: [Microscopy] Re: viaWWW:SEM - Recommendation on C-coater, CL detector

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On Mar 7, 2015, at 8:35 AM, microscopylistserver-
noreply-at-microscopy.com wrote:

} Name: Chris Mattinson
}
} Organization: Central Washington University
}
} Title-Subject: [Filtered] SEM - Recommendation on C-coater, CL
} detector
}
} Message: We are looking to buy a C-coater to be used with a FE-SEM,
} and would be grateful for your
} comments/experiences with C-coaters such as Cressington 208C, Denton
} Desk V, Quorumtech Q150T, or
} others you may recommend. Our coater would primarily be used to
} prepare geological samples for EDS
} analysis and mapping, including quantitative EDS analysis using
} standards and beam current
} measurement, so the evenness and reproducibility of the coating are
} important.
}
} Also, we are considering the Centaurus CL detector for the SEM, and
} would appreciate input from
} anyone who has experience with this detector.
}
} Thanks,


Dear Chris,
I used the Cressington 208 for both carbon and metal coating, and it
was very reliable and consistent. Just a satisfied customer; no
financial interest.
Yours,
Bill




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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 8 Mar 2015 17:01:20 -0500
Subject: [Microscopy] viaWWW:kevex 4855 info needed

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Email: cmazareanu-at-yahoo.com
Name: Constantin

Organization: hobby

Title-Subject: [Filtered] kevex 4855

Message: Hi I am looking for any information regarding kevex 4855 SEM control digital interface. I
need setup information and and a schematic if is possible. I searched around internet but no
information is available. This is a part of a larger effort to bring a SEm to digital age. I am
looking also for KEVEX MCA schematics and setup. Cannot find anywhere KEvex Sigma software. There is
someone who can help me? Thank you
Constantin

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From: jens.kling-at-web.de
Date: Mon, 9 Mar 2015 07:23:18 -0500
Subject: [Microscopy] TEM Gatan heating holder issue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Everyone

We have an issue with our two conventional Gatan heating holders (inconnel
and tantalum) and were wondering, if someone else faced the same.

The problem is that we cannot get HRTEM images when the holder is connected
to the power supply and the supply is switched on. It doesn't matter if the
heating is running or not, it just has to be switched on. The power supply
is connected to a socket coming from the microscope and additional grounding
doesn't help. Interchanging of the two power supplies makes no difference.
Interestingly, this issue is not 100 procent reproducible, as from time to
time everything is working perfectly and you see no effect at all. The
microscope is a FEI Titan.

Here is a link to a few images. One taken with the power supply switched off
and the related FFT, and one with the power supply switched on and the
related FFT.
(https://onedrive.live.com/redir?resid=507493AEB39D8528!211&authkey=!AHqWGyO
oE_yhiCw&ithint=folder%2cjpg)

Did anybody face the same or has an idea about it?
Any help is very much appreciated.

Thanks a lot
Jens


==============================Original Headers==============================
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7, 24 -- To: {Microscopy-at-microscopy.com}
7, 24 -- Subject: TEM Gatan heating holder issue
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From: microwink-at-gmail.com
Date: Mon, 9 Mar 2015 08:46:24 -0500
Subject: [Microscopy] Re: TEM Gatan heating holder issue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Jens,

It could be vibrations induced in the connecting cable that are
transferred into the holder. If it was electrical interference caused
by insufficient or poor grounding, then I would think it wouldn't be
intermittent. Try securing the cable and see if it improves the
behavior. Otherwise, I would contact Gatan directly to see if they
have a better idea.

Good luck,
Chris

On Mon, Mar 9, 2015 at 8:35 AM, {jens.kling-at-web.de} wrote:
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Everyone
}
} We have an issue with our two conventional Gatan heating holders (inconnel
} and tantalum) and were wondering, if someone else faced the same.
}
} The problem is that we cannot get HRTEM images when the holder is connected
} to the power supply and the supply is switched on. It doesn't matter if the
} heating is running or not, it just has to be switched on. The power supply
} is connected to a socket coming from the microscope and additional grounding
} doesn't help. Interchanging of the two power supplies makes no difference.
} Interestingly, this issue is not 100 procent reproducible, as from time to
} time everything is working perfectly and you see no effect at all. The
} microscope is a FEI Titan.
}
} Here is a link to a few images. One taken with the power supply switched off
} and the related FFT, and one with the power supply switched on and the
} related FFT.
} (https://onedrive.live.com/redir?resid=507493AEB39D8528!211&authkey=!AHqWGyO
} oE_yhiCw&ithint=folder%2cjpg)
}
} Did anybody face the same or has an idea about it?
} Any help is very much appreciated.
}
} Thanks a lot
} Jens
}
}
} ==============================Original Headers==============================
} 7, 24 -- From jens.kling-at-web.de Mon Mar 9 07:23:17 2015
} 7, 24 -- Received: from mout.web.de (mout.web.de [212.227.15.3])
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} 7, 24 -- From: "Jens Kling" {jens.kling-at-web.de}
} 7, 24 -- To: {Microscopy-at-microscopy.com}
} 7, 24 -- Subject: TEM Gatan heating holder issue
} 7, 24 -- Date: Mon, 9 Mar 2015 13:23:15 +0100
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 9 Mar 2015 08:55:55 -0500
Subject: [Microscopy] viaWWW:FEI TIA on Windows 8.1

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Email: twh-at-cen.dtu.dk
Name: Thomas Hansen

Organization: DTU

Title-Subject: [Filtered] TIA on Windows 8.1

Message: Hi.

Has anyone managed to get the TIA software from FEI running on a Windows 8.1 PC?

Thanks.

Thomas


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From: colijn.1-at-osu.edu
Date: Mon, 9 Mar 2015 09:52:51 -0500
Subject: [Microscopy] Re: viaWWW:FEI TIA on Windows 8.1

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The only way I was able to get TIA running was to set up a virtual
machine and install WinXP in it. I used VirtualBox though there are
other virtual machine programs as well.

Good luck,
Henk


On 3/9/2015 9:57 AM, microscopylistserver-noreply-at-microscopy.com wrote:
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} Has anyone managed to get the TIA software from FEI running on a Windows 8.1 PC?
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--

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*C*enter for *E*lectron *M*icroscopy & *A*nalysi*S*

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"Time is that quality of nature which keeps things from happening all at
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From: ALawrence-at-i2at.msstate.edu
Date: Mon, 9 Mar 2015 11:01:07 -0500
Subject: [Microscopy] Student Bursary program - M&M 2015 Portland meeting

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http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The deadline for abstract submission has passed and as you are making plans to attend the Portland meetings (Aug. 2-6), please don't forget about MSA's student bursary program. Its purpose is to encourage students to attend the meetings by helping to defray some of the costs while giving them an opportunity to meet and interact with the established microscopy community.

The students will be paid $10 an hour to work for ~20 hours (up to 40 hours) during the meeting or pre-meeting events. The jobs involve such things as providing support in the different symposia (assisting with audio-visual needs, speaker set-up, maintaining an attendance count), staffing the volunteer office, monitoring use of the Internet Café, and helping with vendor tutorial sign-up. Payment is given as a check at the end of the meetings or when the student leaves Portland.

Once the program has been finalized, each registered bursary will be contacted and allowed to choose the times and activities they would like to work. Many times they end up "working" sessions they would attend anyway. There is an added bonus of $10 cash to help with meals for each morning and/or afternoon session worked and a meeting shirt.

If anyone would like to participate in the bursary program, please check the "I wish to apply for a student bursary" box in section 2 of the registration form. Also, please send me an email of your intention. Bursary space is limited, so sign-up early. Applicants for the bursaries must be members of MSA or MAS, enrolled as students at a recognized educational institution, and have paid their registration fee.

For those 'non-students' volunteers are also needed to help with the above mentioned meeting activities. Although not paid on an hourly basis as the student bursaries, volunteers do receive a meeting shirt and the same cash allotment to help with meals. Volunteers also have the opportunity to interact more with the microscopy community as they assist with meeting tasks.

If anyone has any questions about the bursary/volunteer program, or would like to participate, please contact:

Amanda Lawrence
Institute for Imaging and Analytical Technologies
Mississippi State University
662-325-7998
alawrence-at-i2at.msstate.edu




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From: steven.spurgeon-at-pnnl.gov
Date: Mon, 9 Mar 2015 18:52:46 -0500
Subject: [Microscopy] Exporting spectrum image slices

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello everyone,

I'm trying to export data from a 2D EELS spectrum image in Digital
Micrograph and Išm not sure what the best approach is. Here is my problem:

1. I have a 2D EELS map / SI of a thin film interface, where x is some
width parallel to the interface, y is some width perpendicular to the
interface, and z is the EELS energy range (400 ­ 700 eV).
2. I would like to integrate all the spectra in plane (x-direction) to
improve signal-to-noise (This would essentially leave me with an EELS line
scan parallel to y).
3. I would then like to export slices at specified integration windows
normal to the plane (y-direction) to text files.

The only way I can currently do this is by drawing an ROI onto the SI,
which generates an individual spectrum integrated across x. I then have to
export this and drag the ROI, repeating ad nauseam until the entire y
length of the scan is traversed. Is there a simpler and faster way to do
this?

Please let me know if you need more clarification. Thanks!
__________________________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate
Pacific Northwest National Laboratory

Tel: +1-509-371-7123
Email: steven.spurgeon-at-pnnl.gov
Web: www.pnnl.gov {http://www.pnnl.gov/}



==============================Original Headers==============================
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8, 26 -- To: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
8, 26 -- Subject: Exporting spectrum image slices
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From: les-at-zsgenetics.com
Date: Tue, 10 Mar 2015 07:15:06 -0500
Subject: [Microscopy] Exporting spectrum image slices

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steven,
If you use MATLAB you can import DM3 files. Here's what might be a useful
link (I have not used this particular one but it looks simple):
http://www.mathworks.com/matlabcentral/fileexchange/29351-dm3-import-for-gat
an-digital-micrograph

ImageJ will also open .DM3 files directly; I do all my analyses in that
package. There are plugins that can be used for this as well, that you can
try on spectrum images.

Once you are in one of those programs you can easily write scripts to do any
arbitrary operation on the data.

Good Luck!
-Larry Scipioni


-----Original Message-----
X-from: steven.spurgeon-at-pnnl.gov [mailto:steven.spurgeon-at-pnnl.gov]
Sent: Monday, March 09, 2015 8:17 PM
To: LES-at-ZSGENETICS.COM

Hello everyone,

I'm trying to export data from a 2D EELS spectrum image in Digital
Micrograph and Išm not sure what the best approach is. Here is my problem:

1. I have a 2D EELS map / SI of a thin film interface, where x is some width
parallel to the interface, y is some width perpendicular to the interface,
and z is the EELS energy range (400 ­ 700 eV).
2. I would like to integrate all the spectra in plane (x-direction) to
improve signal-to-noise (This would essentially leave me with an EELS line
scan parallel to y).
3. I would then like to export slices at specified integration windows
normal to the plane (y-direction) to text files.

The only way I can currently do this is by drawing an ROI onto the SI, which
generates an individual spectrum integrated across x. I then have to export
this and drag the ROI, repeating ad nauseam until the entire y length of the
scan is traversed. Is there a simpler and faster way to do this?

Please let me know if you need more clarification. Thanks!
__________________________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate Pacific Northwest
National Laboratory

Tel: +1-509-371-7123
Email: steven.spurgeon-at-pnnl.gov
Web: www.pnnl.gov {http://www.pnnl.gov/}



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From: s.walck-at-comcast.net
Date: Tue, 10 Mar 2015 08:30:04 -0500
Subject: [Microscopy] Exporting spectrum image slices

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I would suggest that you use a multivariate statistical analysis (MSA) approach such as using AXSIA (Automated eXpert Spectrum Image Analysis) software or the MSA plug-in for DM that does Principal Component Analysis. The AXSIA software uses Matlab and the SIMSIMAN module that comes with the AXSIA software would allow you to extract your line profile easily. It would also be available in Matlab for any manipulation or export that you need. The MSA plug-in would allow you to reconstruct your data to improve your signal to noise for the profile. In both cases, you must be careful to align your EELS spectra in energy throughout the spectrum image using either the zero loss peak or a peak that is in both phases and does not have a chemical shift. You must also take care of eliminating X-ray peaks in your EELS data, otherwise they are identified as unique phases. If you do this, you minimize the number of factors (components) identified. Masasha Watanabe and Paul Kotula gave excellent tutorial talks at M&M'13 on the topic. Both are available online for viewing. You might have to contact John Mansfield for the link because I don't have it available as I write this. The advantage of the MSA approach is that your analysis gives you an image and so any inhomogeneities across your interface in terms of the concentration profile would easily be identified. It is also a totally unbiased analysis approach.

Masashi is the author of the MSA plugin for DM and it is available through HREM Research. Paul is a co-author of the AXSIA software and a co-patent holder for it as well. I would highly recommend that you look up their publications on the topic as they are very good reference articles to have.

We just started using the AXSIA technique after having Paul Kotula give us a tutorial at the Army Research Laboratory and are finding it a very powerful. It's a bit more trickier with EELS that with XEDS, though.

-Scott Walck

----- Original Message -----
X-from: "steven spurgeon" {steven.spurgeon-at-pnnl.gov}
To: "S Walck" {S.Walck-at-comcast.net}
Sent: Monday, March 9, 2015 8:17:02 PM

Hello everyone,

I'm trying to export data from a 2D EELS spectrum image in Digital
Micrograph and I�m not sure what the best approach is. Here is my problem:

1. I have a 2D EELS map / SI of a thin film interface, where x is some
width parallel to the interface, y is some width perpendicular to the
interface, and z is the EELS energy range (400 ďż˝ 700 eV).
2. I would like to integrate all the spectra in plane (x-direction) to
improve signal-to-noise (This would essentially leave me with an EELS line
scan parallel to y).
3. I would then like to export slices at specified integration windows
normal to the plane (y-direction) to text files.

The only way I can currently do this is by drawing an ROI onto the SI,
which generates an individual spectrum integrated across x. I then have to
export this and drag the ROI, repeating ad nauseam until the entire y
length of the scan is traversed. Is there a simpler and faster way to do
this?

Please let me know if you need more clarification. Thanks!
__________________________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate
Pacific Northwest National Laboratory

Tel: +1-509-371-7123
Email: steven.spurgeon-at-pnnl.gov
Web: www.pnnl.gov {http://www.pnnl.gov/}



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From: ray.twesten-at-sbcglobal.net
Date: Tue, 10 Mar 2015 19:22:21 -0500
Subject: [Microscopy] Exporting spectrum image slices

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Steven,
Digital Micrograph has a host of tools for dealing with 3-D data sets.
There is a menu labeled "Volume". This will allow you to rotate or project
the data along any direction needed.

For your application, you would want to project the data along the "y".
You will now have a 2D dataset with the projected intensity along the
interface in the X-Dimension and Energy in the Y-Dimension.

To save this as a series of files, you would then use the "File:Save As
Series ..." menu item. You can choose EMSA format for the file type and the
EELS header information and calibrations will be preserved. You can also
use the "Text" format, then you only get the intensities.

You can write a simple script in Digital Micrograph to do this. Below is
an example. It took about 4x longer to document that actually write.

For more information about scripting, there is a good reference section in
the Digital Micrograph help file. You can also get a lot of information at
the DM Script site at TUGraz {
http://portal.tugraz.at/portal/page/portal/felmi/DM-Script }


Hope this helps,
Ray


//****************
// Simple script to project a Spectrum Image into a Line Scan.

image imgSrc := GetFrontImage() // Grabs a pointer to the front dataset.
This is your 3D Spectrum Image
image imgRes; // Variable for result. This does not yet exist

// Get the size of the spectrum image
number sX, sY, sZ;
sX = imgSrc.ImageGetDimensionSize(0);
sY = imgSrc.ImageGetDimensionSize(1);
sZ = imgSrc.ImageGetDimensionSize(2);

// Choose a projection direction. Returns "1" for "Along X" and "0" for
"Along Y".
// 1/0 is interpreted as true/false (Actually 0 = false, non-zero = true)
number projectX = TwoButtonDialog("Choose a projection direction", "Along
X", "Along Y")

//Create the image to receive the projection
// Uses the "ImageClone" function to keep all of the acquisition tags
// Uses the "Slice2" function to choose a sub-region of the original data
// There are more elegant ways to do this, but this is simple.
if(projectX)
imgRes := ImageClone(imgSrc.Slice2(0, 0, 0, 2, sZ, 1 , 1, sY, 1));
else
imgRes := ImageClone(imgSrc.Slice2(0, 0, 0, 2, sZ, 1 , 0, sX, 1));

// Set the new image to all zeros.
imgRes = 0;


//Do the projection. Uses the image iterators to operate on the entire
image at once. This could be done
// with a for loop, but with an interpreted language, it would take
forever.
// This is compiled on the fly and very fast.

if(projectX)
imgRes[iplane, irow] += imgSrc;
else
imgRes[iplane, icol] += imgSrc;


// Sets some image information. Uses the simple "If, Then ,Else" structure
( "logical statement" ? "Do if true" : "Do if false")
// You can use this structure to operate of every pixel in an image.
imgRes.SetNumberNote("EELS:Acquisition:Number of frames", (projectX ? sX :
sY))
imgRes.SetName(imgSrc.GetName() + "_Projection")
imgRes.ShowImage() // If you do not show the image, it is killed when the
script exits.

//********************


Ray D. Twesten, Ph.D.
Product Manager – Analytical Instruments
  Gatan, Inc.
Tel. +1 (925) 224-7392

-----Original Message-----
X-from: steven.spurgeon-at-pnnl.gov [mailto:steven.spurgeon-at-pnnl.gov]
Sent: Monday, March 09, 2015 5:08 PM
To: ray.twesten-at-sbcglobal.net

Hello everyone,

I'm trying to export data from a 2D EELS spectrum image in Digital
Micrograph and Išm not sure what the best approach is. Here is my problem:

1. I have a 2D EELS map / SI of a thin film interface, where x is some width
parallel to the interface, y is some width perpendicular to the interface,
and z is the EELS energy range (400 ­ 700 eV).
2. I would like to integrate all the spectra in plane (x-direction) to
improve signal-to-noise (This would essentially leave me with an EELS line
scan parallel to y).
3. I would then like to export slices at specified integration windows
normal to the plane (y-direction) to text files.

The only way I can currently do this is by drawing an ROI onto the SI, which
generates an individual spectrum integrated across x. I then have to export
this and drag the ROI, repeating ad nauseam until the entire y length of the
scan is traversed. Is there a simpler and faster way to do this?

Please let me know if you need more clarification. Thanks!
__________________________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate Pacific Northwest
National Laboratory

Tel: +1-509-371-7123
Email: steven.spurgeon-at-pnnl.gov
Web: www.pnnl.gov {http://www.pnnl.gov/}



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From: microscopylistserver-noreply-at-microscopy.com
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Subject: [Microscopy] viaWWW:Scientist I Opening in Frederick, MD (FNLCR)

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Email: lauri.rimorin-at-nih.gov
Name: Lauri Rimorin

Organization: Leidos Biomedical Research, Inc.

Title-Subject: [Filtered] Scientist I Opening in Frederick, MD (FNLCR)

Message: Leidos Biomedical Research, Inc. (LBRI), a wholly owned subsidiary of Leidos, operates the
Frederick National Laboratory for Cancer Research (FNLCR). FNLCR is a Federally Funded Research and
Development Center (FFRDC) sponsored by the National Cancer Institute (NCI). It is the only FFRDC
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diagnostic, and therapeutic products for cancer and AIDS.

The breadth of FNLCR’s activities spans the research and development spectrum, including
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For more information about Leidos Biomedical Research Inc., please visit our webpage at
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PROGRAM DESCRIPTION

The Cancer Research Technology Program (CRTP) develops and implements emerging technology, cancer
biology expertise and research capabilities to accomplish NCI research objectives. The CRTP is an
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major focus of the CRTP is the NCI RAS Initiative with the goal to discover new therapeutic
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JOB DESCRIPTION

The Scientist I will perform: 1) negative staining and cryo-EM of proteins and protein complexes
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•Possession of Doctoral degree from an accredited college or university in a field related to
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PREFERRED QUALIFICATIONS

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From: Pamela-at-afmworkshop.com
Date: Thu, 12 Mar 2015 11:52:06 -0500
Subject: [Microscopy] AFM To Characterize Polymer Materials - Workshop Announcement

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~You Are Invited~

When: April 27-28, 2015
Where: Norwood, Massachusetts
What: Workshop on Atomic Force Microscopy to Characterize Polymers

Led by Dalia Yablon, Ph.D., this two day course mixes lecture with labwork on
the basics of atomic force microscopy and its specific application to
imaging polymer materials.

AFM hardware and software will be reviewed, with special emphasis
on the imaging modes and image processing needed to study polymer materials.

While we utilize AFMs from AFMWorkshop to teach basic concepts and
demonstrate AFM operation, attendees with experience on any make or
model of atomic force microscope will find the labwork relevant
and practical.


All levels of experience are welcome.
An "early bird" discount registration is being offered through March, 2015.

For more information, please visit:
http://www.afmworkshop.com/characterization-of-polymer-materials-afm-training.html

Thank you,
Pamela Stone




Pamela Stone
AFMWorkshop, Inc.
1434 E. 33rd Street
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www.afmworkshop.com

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 12 Mar 2015 18:23:24 -0500
Subject: [Microscopy] viaWWW:TEM - Hair Samples

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Email: etranfield-at-igc.gulbenkian.pt
Name: Erin Tranfield

Organization: Instituto Gulbenkian de Cięncia, Portugal

Title-Subject: [Filtered] TEM - Hair Samples

Message: Dear List,

We are trying to preserve newborn hair samples by HPF / AFS for TEM analysis. We are having the
problem that we can not section the hair samples because the sample keeps popping out of the Epon
blocks. If anyone has any experience processing hair samples, could you please contact me? I would
appreciate learning how you did your infiltration, what resin you used and if you have any tricks to
overcoming the problem of small samples popping out of blocks.

Thank-you for your help
Erin


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From: Duane.Harland-at-agresearch.co.nz
Date: Fri, 13 Mar 2015 03:40:03 -0500
Subject: [Microscopy] viaWWW:TEM - Hair Samples

Contents Retrieved from Microscopy Listserver Archives
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Hello Erin,

Hair and other keratin fibres are not easy tissues and must be treated differently than normal tissue samples.
However, what method you need depends on if you are looking at the hair above the skin only, or if you are also looking at the hair follicle. For the moment I'll assume you are interested in only the hair above the skin.

Hair is already fixed by nature. It is also very dense. The water content is very low, and the cells are dead.
It is the opposite to normal living cells in terms of the problems for TEM preparation. It can be very easy to work with also depending on what features you want to see.

The easiest method is to wash the hair to remove external lipids and dirt, place the hairs across a small frame made of plastic, or thread hairs through a narrow plastic tube, embed in LR-White (epoxy is ok too), trim, section with a diamond knife to about 100 nm/gold sections and section stain with uranyl acetate and lead citrate (slightly extended stain times compared to normal) and you can see most features.

The resin will not penetrate the hair. But the hair will sit inside the resin. There are often problems with folding (you can reduce this with thicker sections) and sometimes problems at the edges of the fibres where the fibre has swollen with the water in the knife boat while the resin has not.

If you want to see the intermediate filaments that make up most of the cortex of the hair, you have to do something more complicated involving repeated treatments of reduction to open up disulfides to attach stain to and use osmium. Or there is also a silver nitrate method which allows you to see the filaments, but at the expense of seeing various other structures.

I'll send a separate email to you with a paper that colleagues and I put together with all these methods.

Harland, D. P., Vernon, J. A., Walls, R. J., & Woods, J. L. (2011). Transmission electron microscopy staining methods for the cortex of human hair: a modified osmium method and comparison with other stains. Journal of Microscopy, 243(2), 184-196. doi: 10.1111/j.1365-2818.2011.03493.x

Kind regards
Duane

____________________________
Dr Duane P Harland
Senior Scientist
T +64 3 321 8710
E duane.harland-at-agresearch.co.nz
AgResearch Limited
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Private Bag 4749 Christchurch 8140, New Zealand
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Email: etranfield-at-igc.gulbenkian.pt
Name: Erin Tranfield

Organization: Instituto Gulbenkian de Cięncia, Portugal

Title-Subject: [Filtered] TEM - Hair Samples

Message: Dear List,

We are trying to preserve newborn hair samples by HPF / AFS for TEM analysis. We are having the
problem that we can not section the hair samples because the sample keeps popping out of the Epon
blocks. If anyone has any experience processing hair samples, could you please contact me? I would
appreciate learning how you did your infiltration, what resin you used and if you have any tricks to
overcoming the problem of small samples popping out of blocks.

Thank-you for your help
Erin


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From: steven.spurgeon-at-pnnl.gov
Date: Mon, 16 Mar 2015 15:35:52 -0500
Subject: [Microscopy] Recommendations for Cr EELS standards

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Hello everyone,

Wešve recently been conducting STEM-EELS analysis of chromium oxides and
wešd like to get more precise about our quantification of white line
ratios in these compounds. To that end, wešd like to prepare Cr standards
that are not oxides (to avoid overlap between the Cr L23 and O K edges).
Does anyone have any recommendations for compounds that have worked well
for this purpose? I am currently considering buying powders such as CrCl3,
but Išd be open to suggestions and preparation tips.

Thanks!
__________________________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate
Pacific Northwest National Laboratory

Tel: +1-509-371-7123
Email: steven.spurgeon-at-pnnl.gov
Web: www.pnnl.gov {http://www.pnnl.gov/}



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From: leunissen-at-aurion.nl
Date: Mon, 16 Mar 2015 16:00:11 -0500
Subject: [Microscopy] charging of ice in SEM

Contents Retrieved from Microscopy Listserver Archives
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Hello,

we are trying to observe ice in the SEM. The purpose is visualising the transition of high density ice (ice II or III) to low density ice, either ice Ic or Ih using EBSD.
The cryo stage in the present setup does not get lower than -140°C and this is only just below the recrystallisation temperature.

To prevent charging gas is admitted into the microscope. This however has a tremendous effect on the stage temperature which easily goes up to -110°C, way above the recrystallisation temperature. As a result we have so far of course not been able to identify the high pressure ice polymorphs.

The best remedy would very probably be to improve the cold stage so we can reach lower temperatures, and for the future this may well be what will be done. For the time being I am looking for alternatives to admitting gas to prevent charging.

Two ideas popped up: freezing salt water or freezing a conductive nanoparticle solution, e.g. gold or silver or as was suggested by Guenter Resch carbon rods. The rationale being that in the eutectica between the pure ice crystals a high concentration of ions or nanoparticles forms a network of conductive material that might or might not assist in reducing charge build up.

Does anyone of you have experience in this area or have alternative ideas?


Thanks,

Jan Leunissen
Dept Geology - University of Otago
Dunedin
New Zealand.

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From: oshel1pe-at-cmich.edu
Date: Tue, 17 Mar 2015 07:17:35 -0500
Subject: [Microscopy] Re: charging of ice in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jan,

In my past life I ran a FE-SEM with cryostage, and charging of ice was
of little issue at 1-2 kV. Most frequently, 1 or 1.5 kV. What sort of
instrument are you using? Can you get a low enough kV to reach charge
balance?

And ... adding nanoparticles, salt water, etc. I'd wonder about that.
Yes, the crystallization process does exclude ions and such to produce
the ice crystals (sea ice is really interesting because of this), but I
doubt that process is 100% complete. I suspect it would be less complete
with nanoparticles than it is with ions. Which means adding salts or
nanoparticles will affect the properties you're trying to study.
Plus, the added salts/nanoparticles are going to add electrical effects
to your samples, even if they are excluded from the crystals. What do
these do?

Phil

} Hello,
}
} we are trying to observe ice in the SEM. The purpose is visualising the transition of high density ice (ice II or III) to low density ice, either ice Ic or Ih using EBSD.
} The cryo stage in the present setup does not get lower than -140°C and this is only just below the recrystallisation temperature.
}
} To prevent charging gas is admitted into the microscope. This however has a tremendous effect on the stage temperature which easily goes up to -110°C, way above the recrystallisation temperature. As a result we have so far of course not been able to identify the high pressure ice polymorphs.
}
} The best remedy would very probably be to improve the cold stage so we can reach lower temperatures, and for the future this may well be what will be done. For the time being I am looking for alternatives to admitting gas to prevent charging.
}
} Two ideas popped up: freezing salt water or freezing a conductive nanoparticle solution, e.g. gold or silver or as was suggested by Guenter Resch carbon rods. The rationale being that in the eutectica between the pure ice crystals a high concentration of ions or nanoparticles forms a network of conductive material that might or might not assist in reducing charge build up.
}
} Does anyone of you have experience in this area or have alternative ideas?
}
}
} Thanks,
}
} Jan Leunissen
} Dept Geology - University of Otago
} Dunedin
} New Zealand.

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: wtivol-at-sbcglobal.net
Date: Tue, 17 Mar 2015 18:36:41 -0500
Subject: [Microscopy] Re: charging of ice in SEM

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On Mar 16, 2015, at 2:23 PM, leunissen-at-aurion.nl wrote:

} we are trying to observe ice in the SEM. The purpose is visualising
} the transition of high density ice (ice II or III) to low density
} ice, either ice Ic or Ih using EBSD.
} The cryo stage in the present setup does not get lower than -140°C
} and this is only just below the recrystallisation temperature.
}
} To prevent charging gas is admitted into the microscope. This
} however has a tremendous effect on the stage temperature which
} easily goes up to -110°C, way above the recrystallisation
} temperature. As a result we have so far of course not been able to
} identify the high pressure ice polymorphs.
}
} The best remedy would very probably be to improve the cold stage so
} we can reach lower temperatures, and for the future this may well be
} what will be done. For the time being I am looking for alternatives
} to admitting gas to prevent charging.
}
} Two ideas popped up: freezing salt water or freezing a conductive
} nanoparticle solution, e.g. gold or silver or as was suggested by
} Guenter Resch carbon rods. The rationale being that in the eutectica
} between the pure ice crystals a high concentration of ions or
} nanoparticles forms a network of conductive material that might or
} might not assist in reducing charge build up.
}
} Does anyone of you have experience in this area or have alternative
} ideas?
}
}
} Thanks,
}
} Jan Leunissen
} Dept Geology - University of Otago
} Dunedin
} New Zealand.


Dear Jan,
I have no experience in SEM of ice, but from other posts to this
list, I would try low-voltage SEM to balance electrons staying in the
specimen with secondary electrons leaving the specimen. An additional
comment is that trying to freeze salt water is likely to result in
crystals of ice surrounded by molecules of salt, since most salts do
not dissolve in ice. One exception, which I have also considered in
order to increase the conductivity of ice, is NH4F, since both NH3 and
HF can incorporate into the ice structure--the reference for this is a
book called Physics of Ice, the name of the author of which I do not
remember.
Yours,
Bill





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From: leunissen-at-aurion.nl
Date: Thu, 19 Mar 2015 16:32:40 -0500
Subject: [Microscopy] Re: charging of ice in SEM - summary

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Thank you, everyone, for your replies. A brief summary below since not all messages were cc’ed to this list.

The idea of freezing brine or a conductive nanoparticle suspension met with scepticism since the ice will separate from the conductive components. The general recommendation was: use as low a kV as you can, it will cause less charging and the surface charge may even become positive.

Unfortunately the low kV and EBSD do not go well together.

Whereas the geology department in Dunedin has been very successful in imaging Ice Ih and getting excellent EBSD patterns from it, this can be done at much higher temperatures since recrystallisation is not an issue. The situation is more complicated for the high pressure crystalline ice polymorphs as the temperature of the ice must not be warmer than ~ -135°C.

A tough nut to crack, but an interesting one, so not giving up yet.

Thank you all, it was great to have so many replies. As you will have been able to tell from my question and the omission of essential details… I am not an SEM expert, so your help was very valuable.

Jan



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} Hello,
}
} we are trying to observe ice in the SEM. The purpose is visualising the transition of high density ice (ice II or III) to low density ice, either ice Ic or Ih using EBSD.
} The cryo stage in the present setup does not get lower than -140°C and this is only just below the recrystallisation temperature.
}
} To prevent charging gas is admitted into the microscope. This however has a tremendous effect on the stage temperature which easily goes up to -110°C, way above the recrystallisation temperature. As a result we have so far of course not been able to identify the high pressure ice polymorphs.
}
} The best remedy would very probably be to improve the cold stage so we can reach lower temperatures, and for the future this may well be what will be done. For the time being I am looking for alternatives to admitting gas to prevent charging.
}
} Two ideas popped up: freezing salt water or freezing a conductive nanoparticle solution, e.g. gold or silver or as was suggested by Guenter Resch carbon rods. The rationale being that in the eutectica between the pure ice crystals a high concentration of ions or nanoparticles forms a network of conductive material that might or might not assist in reducing charge build up.
}
} Does anyone of you have experience in this area or have alternative ideas?
}
}
} Thanks,
}
} Jan Leunissen
} Dept Geology - University of Otago
} Dunedin
} New Zealand.
}
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Subject: [Microscopy] viaWWW:Senior Staff Position: UConn-FEI Center of Excellence in Microscopy.

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Message: Academic Assistant 4 - Institute of Materials Science

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From: connellyps-at-nhlbi.nih.gov
Date: Fri, 20 Mar 2015 12:05:53 -0500
Subject: [Microscopy] last call for position at NIH

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Dear Listers,

If you have been considering sending in an application to NIH/National
Heart, Lung and Blood Institute for an "Electron Microscopy Senior
Scientist and/or Core Director" (see MSA Job posting ID 22114004) you only
have about two more weeks to get it in.

This message is not confidential and can be freely shared and reproduced.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI EM Core Facility
National Institutes of Health
Building 14E Room 111B
Bethesda, MD 20892-5570
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connellyps-at-mail.nih.gov

http://www.nhlbi.nih.gov/research/intramural/researchers/core/electron-micr
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From: microscopy.listserver-at-gmail.com
Date: Fri, 20 Mar 2015 20:17:49 -0500
Subject: [Microscopy] viaWWW:reticle for Leica Ultracut R

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Email: chrisbrantner-at-email.gwu.edu
Name: Chris Brantner

Organization: George Washington University

Title-Subject: [Filtered] reticle for Leica Ultracut R

Message: Good afternoon listers,

I was wondering if anyone out there has a reticle that fits into the eye
piece of a Leica Ultracut R that they are not using and would be willing
to part with. I would like to put it on this ultramicrotome that I will
be using to train students so that they can "see" how large their resin
blackface is.

Thanks
Chris

George Washington U-Center for Nanofabrication and Imaging
Washington DC
chrisbrantner-at-gwu.edu

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 25 Mar 2015 08:50:44 -0500
Subject: [Microscopy] viaWWW:2nd international workshop on =?windows-1252?Q?=94TEM_s?=

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Email: klaus.leifer-at-angstrom.uu.se
Name: Klaus Leifer

Organization: Uppsala University

Title-Subject: [Filtered] 2nd international workshop on ”TEM spectroscopy in materials science”

Message: Uppsala University organises the 2nd international workshop on ”TEM spectroscopy in
materials science” in Uppsala (18th-20th May). We have invited very good colleagues from the field
of spectroscopy and have made strong efforts to keep the registration fees very low. We believe that
this could make the workshop interesting for some of your co-workers or students. Uppsala is the
closest city to Stockholm airport (18min) and the airport is easy to reach for national and
international flights.


Detailed Information about the workshop can be found at this URL


http://www.teknik.uu.se/elmin/spectroscopy.php

Best regards
Klaus

--
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Laboratory of Electron Microscopy and Nanoengineering, Div. Applied Materials Science, Dep.
Engineering Science, Uppsala University, Angstromlaboratory, Lägerhyddsv. 1, Box 534, 751 21
UPPSALA, Sweden
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From: parishcm-at-ornl.gov
Date: Fri, 27 Mar 2015 09:07:14 -0500
Subject: [Microscopy] Removing Kapton tape

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We have a very valuable sample that was wrapped in Kapton tape for analysis by synchrotron and micro-CT. The problem now is that we want to remove the tape and sticky residue to prepare the sample for FIB and TEM.

Does anyone have any recipes (chemical or otherwise) for getting the polymers off cleanly? We could bake / burn the sample (it's refractory ceramic) but we don't want to do this unless necessary.

Thanks
Chad

---------------------
Chad M. Parish, Ph.D.
Research and Development Staff Member
Radiation Effects and Microstructural Analysis Group
Materials Science and Technology Division
Oak Ridge National Laboratory
Phone: 1 865 574 0092
Email: parishcm-at-ornl.gov



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From: vray-at-partbeamsystech.com
Date: Fri, 27 Mar 2015 09:21:34 -0500
Subject: [Microscopy] Re: Removing Kapton tape

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Hi Chad,

I had good luck removing Kapton tape residue from thin (~250um)
semiconductor samples by soaking in warm (~40C, covered beaker under
fume hood) acetone overnight and then gently rubbing with a Q-tip soaked
in acetone on a flat piece of teflon plastic.

If you find a better approach - please share.

Valery Ray - also with NISP Lab, UMDCP
=======================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844, USA
Phone: +1-978-296-5063
E-Mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com
UMD E-Mail: vray-at-umd.edu

On 3/27/2015 10:09 AM, parishcm-at-ornl.gov wrote:
} ----------------------------------------------------------------------------
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} We have a very valuable sample that was wrapped in Kapton tape for analysis by synchrotron and micro-CT. The problem now is that we want to remove the tape and sticky residue to prepare the sample for FIB and TEM.
}
} Does anyone have any recipes (chemical or otherwise) for getting the polymers off cleanly? We could bake / burn the sample (it's refractory ceramic) but we don't want to do this unless necessary.
}
} Thanks
} Chad
}
} ---------------------
} Chad M. Parish, Ph.D.
} Research and Development Staff Member
} Radiation Effects and Microstructural Analysis Group
} Materials Science and Technology Division
} Oak Ridge National Laboratory
} Phone: 1 865 574 0092
} Email: parishcm-at-ornl.gov
}
}
}
} ==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sun, 29 Mar 2015 11:05:19 -0500
Subject: [Microscopy] viaWWW:Bruker Esprit 1.9 Problem

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Email: 13qw9-at-queensu.ca
Name: Qiang Wang

Organization: Queen's University

Title-Subject: [Filtered] Bruker Esprit 1.9 Problem

Message: Hi all, we just installed an Bruker Esprit 1.9 offline software. Some problems happened.
The first one is when I was trying to do QMap for some existed ChemiSTEM HyperMap data, all the QMap
images are just black but not with different colors as usual. The second one is when I wanted to
make a new QMap method, error happened like "cliff-lorimer: wrong primary energy in standard
library". So, I guess there may be some parameters need to be changed? I change the "Voltage range"
to 200KV in the "Microscope information" already. So, if anyone of you know any possible reason for
this, please let me know. Thank you very much!

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From: johndmcmaster-at-gmail.com
Date: Mon, 30 Mar 2015 10:30:26 -0500
Subject: [Microscopy] info needed: LeCroy 6010 magic controller

Contents Retrieved from Microscopy Listserver Archives
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A friend is trying to get some instruments running but doesn't have the
manual for this. I found something similar, but it would be good to have
the actual user manual. Does anyone have a way to get this?

I've collected what I have so far here:
http://siliconpr0n.org/wiki/doku.php?id=lecroy:6010_magic_controller

John

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 30 Mar 2015 17:52:47 -0500
Subject: [Microscopy] viaWWW:Service Contracts on older Leica equipment

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Email: bradabaugh-at-hsc.wvu.edu
Name: Becky Radabaugh

Organization: West Virginia Univirsity EM Department

Title-Subject: [Filtered] Service Contracts on older equipment

Message: We have an older Leica UCT ultramicrotome that is used for research and is no longer
covered under service contracts provided by Leica. Are there any companies that would provide
service contracts for older equipment such as this?

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From: Rosemary.White-at-csiro.au
Date: Mon, 30 Mar 2015 18:53:39 -0500
Subject: [Microscopy] Re: viaWWW:Service Contracts on older Leica equipment

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Dear Becky,

Although the older microtomes are officially no longer covered by service
contracts, you can often convince your Leica microtome specialist to
service them. They may complain, but they will usually do it (in our
experience, at least). We recently moved into a different building, and
the microtome specialist gave all of the microtomes a service, even the
oldest Ultracut (pre-Ultracut E). It will just cost a chunk of money.

However, in the USA, you likely have alternatives to Leica. They may not
give you a service contract but I imagine they will service the
instruments - they just need to be aware of the idiosyncracies of the
different models.

good luck,
cheers,
Rosemary

Dr Rosemary White
CSIRO Black Mountain
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
E rosemary.white-at-csiro.au


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From: philippe.buffat-at-epfl.ch
Date: Mon, 30 Mar 2015 19:35:10 -0500
Subject: [Microscopy] Bruker Esprit 1.9 Problem

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Dear Qiang Wang,

Generally when you receive the message that you have a "wrong primary
energy in standard library" it means that your spectra or map was
recorded at a different energy than that used to build the Esprit library.

Go to the menu "Database", then top right open the button "Standard
Library" and select "new".
Accept to change the current library and fill the data for the new one:
-any name you like,
- elevation is the take-off angle, probably 18° or 22° for Titan or
Osiris respectively,
- azimuth the angle between the goniometer axis and the diode positions 45°
- sample tilt that you used to record the data.

Regards

Philippe

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From: stefan.diller-at-t-online.de
Date: Tue, 31 Mar 2015 12:57:06 -0500
Subject: [Microscopy] RS232 Interface Zeiss DSM 960

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Dear All,
anybody out there who can give me the original Zeiss part number of the serial interface used to remote a Zeiss DSM 960 ?
It should be something like "348331-9023-1234"
Or better: Somebody out there who would like to part with this interface card?

Best regards,
Stefan

--


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Arndtstrasse 22
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++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
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Anfahrt: http://Mail.map24.com/Stefan.Diller
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From: fahayes-at-ucdavis.edu
Date: Tue, 31 Mar 2015 21:02:03 -0500
Subject: [Microscopy] rationale for buying a high res sputter coater

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Listers,

We have 3 FEI FEG SEMs in our building. A new FEI FIB, a 4 yr old FEI nanoSEM and a 15 yr old FEI XL30 SFEG

We have 2 older sputter coaters. A Polaron E5100 (1988) and a Denton Desk II. Both use mech pumps. Our Polaron is no longer working

The problem of course is the visible grain at high mags (} 50Kx) with gold, gold/palladium, etc. It doesn't matter if it's the Polaron or the Denton. Same result. Visible grain over 50Kx.

I need to justify with written rationale to our directors why we should consider buying a high res coater. Simply stating "to compliment our 3 FEG SEMs" is not enough of a reason to spend the money. They prefer I fix the Polaron.

Any ideas/feedback from those who have already crossed this bridge would be helpful.

Thank you in advance

Also, does anyone have a resource for parts for Polaron coaters circa 1988 models?

Fred Hayes
Manager, AMCaT Labs
CHMS, College of Eng
UC Davis




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From: jhall-at-2spi.com
Date: Wed, 1 Apr 2015 07:36:35 -0500
Subject: [Microscopy] rationale for buying a high res sputter coater

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Fred,

At the risk of sounding too salsesman-y, I'd like to offer my thoughts on your situation.

First, congrats on having 3 FEGs at your facility! That's always a good problem to have! A couple things to consider:

As for the coaters, I would start with the following approach. First, figure out the size of the features you are looking for. You should have an idea of the grain size put down by each of your coaters. If the coating thickness or grain size exceeds the size of the features you are looking for, you will never see them. I would try stating it in such a way that you may be missing important information or obtaining inaccurate information from your samples because it is highly possible small features have been completely obscured by the thickness and or grain size of the metal coating you are currently using. I would recommend either an osmium coater or a high vacuum iridium or platinum coater, as you will be able to lay down much thinner coatings with grain sizes that may not even be visible.

If you are working at very low accelerating voltages, know that almost all samples, regardless of how carefully they were prepared or stored, build up a thin layer of hydrocarbon material on the surface. When working below 2kV, this contamination contributes significantly to the image formed. Ideally it should be removed with a UV cleaning cycle (although a very low power plasma clean may work on some materials). Doing so may will give a much better, and more accurate surface image, and may eliminate the need for a metal coating in some instances.

In the end, I think a valid way to frame your request is by stating that you want to use the equipment and tools that will get you the most accurate data from your samples, and not leave your results open to questioning or second guessing. If it results in saving time (samples come out right the first time) or money (new systems come with warranties, less prone to breakdowns) that might also help.

Best of luck! If you would like to continue this conversation offline, I would be happy to.

Cheers,

Jeff

jhall-at-2spi.com

Jeffrey A. Hall | Microscopist
SPI Supplies | 206 Garfield Ave. | West Chester, PA 19380, USA
1-610-436-5400 x106 | jhall-at-2spi.com | http://www.2spi.com
Twitter: http://2spi.com/twitter | Facebook: http://2spi.com/facebook


Dismclaimer: SPI Supplies manufactures and distributes tools for people working in microscopy laboratories

________________________________________
X-from: fahayes-at-ucdavis.edu {fahayes-at-ucdavis.edu}
Sent: Tuesday, March 31, 2015 10:19 PM
To: Jeff Hall

Listers,

We have 3 FEI FEG SEMs in our building. A new FEI FIB, a 4 yr old FEI nanoSEM and a 15 yr old FEI XL30 SFEG

We have 2 older sputter coaters. A Polaron E5100 (1988) and a Denton Desk II. Both use mech pumps. Our Polaron is no longer working

The problem of course is the visible grain at high mags (} 50Kx) with gold, gold/palladium, etc. It doesn't matter if it's the Polaron or the Denton. Same result. Visible grain over 50Kx.

I need to justify with written rationale to our directors why we should consider buying a high res coater. Simply stating "to compliment our 3 FEG SEMs" is not enough of a reason to spend the money. They prefer I fix the Polaron.

Any ideas/feedback from those who have already crossed this bridge would be helpful.

Thank you in advance

Also, does anyone have a resource for parts for Polaron coaters circa 1988 models?

Fred Hayes
Manager, AMCaT Labs
CHMS, College of Eng
UC Davis




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From: john.mitchels-at-gmail.com
Date: Wed, 1 Apr 2015 12:06:37 -0500
Subject: [Microscopy] Microscopy and Analysis Conference 2015 - Bath,UK

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The University of Bath is holding a one-day Microscopy and Analysis
Conference on 6th May 2015.

We have some excellent speakers for the Conference - see
http://blogs.bath.ac.uk/mas/ for details of speakers, information
about the trade exhibition and a conference program to download.

There will be a free buffet lunch and wine/beer reception for delegates!

It is free to sign up for the conference - just email Ursula Potter at
University of Bath (u.j.potter-at-bath.ac.uk).

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 1 Apr 2015 17:59:06 -0500
Subject: [Microscopy] viaWWW:2015 UMB Current Electron Microscopy Techniques Workshop

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Title-Subject: [Filtered] 2015 UMB Current Electron Microscopy Techniques Workshop

Message: Dear Colleagues,

We are pleased to announce that the Electron Microscopy Core Imaging facility (EMCIF) at the
University of Maryland Baltimore will be hosting the Second Annual Current EM Techniques Workshop on
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The focus of this year’s workshop is immuno electron microscopy. The workshop will include oral
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instrument demonstrations and hands-on practice in the afternoon session.

Dr. Kent McDonald will be keynote speaker this year. There will be four tips and trick discussion
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 1 Apr 2015 17:59:48 -0500
Subject: [Microscopy] viaWWW:Diagnosing problems with a carbon coater

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Email: dan.fairweather-at-delphi.com
Name: Dan Fairweather

Organization: Delphi Automotive, Powertrain Div

Title-Subject: [Filtered] Diagnosing problems with a carbon coater

Message: Our lab had an EMS 450 carbon coater sitting on the counter top. I located the roughing
pump in storage and am trying to make the system operational. All electrical operation seems to be
working. I dumped out the old pump oil and replaced with new oil. Upon first pumping down the
system, the vacuum gauge leveled at 5x10-1 mbar. I worked with the vacuum pump connections and was
able to obtain 2x10-1 mbar. I ordered new seals for the jar that forms the vacuum chamber [the old
seals are at least 10yrs old]. The new seals just came in, and there was no improvement to the level
of vacuum. One of the observations that I have made is that I obtain the best vacuum when I turn on
the system in the morning. If I leave the system running, the vacuum level will steadily worsen,
holding finally at 5x10-1 mbar. Once I have cycled the system, I can never reach that level again
unless I wait until the next day.

Any suggestions from the community? Do I have a pump problem or a vacuum gauge problem?

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 1 Apr 2015 18:00:37 -0500
Subject: [Microscopy] viaWWW:TEM - MT2 Ultramicrotome Operation

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Email: aheiss-at-amnh.org
Name: Aaron Heiss

Organization: American Museum of Natural History

Title-Subject: [Filtered] TEM - MT2 Ultramicrotome Operation

Message: Hello all! I am a moderately experienced ultramicrotomist who learned on a Leica UC7, and
subsequently used a Reichert-Jung Ultracut E. I'm now working with a Sorvall MT2, and while the
unit is well-maintained and I can get good sections from it, I'm not sure exactly how thick it's
cutting.* I know that the "main" setting is done with the knob on the top (which is marked for
thickness in tens-of-Angstroms, better known as nanometres) but that this is affected by the wheel
on the left of the front panel, and I'm not really sure how, or what to make of the markings (0 to
18). So, my question is this: how exactly does one set a precise thickness on the MT2?

* Yes, I can use interference colours, or check the thickness of folds, but this only measures the
thickness of the sections, not how much material was cut from the block. In other words, it doesn't
account for compression, which is of course variable both before and after spreading (I use
chloroform vapours for this). The amount cut from the block is important because I'm doing 3-D
reconstruction of serial sections, which means that I need to know exactly how far apart the
sections are in the block.

TIA!
Aaron


Aaron A. Heiss, Ph.D.
Gerstner Scholar and Lerner-Gray Fellow
Eunsoo Kim Laboratory
Department of Invertebrate Zoology
American Museum of Natural History
Central Park West at 79th Street
New York, NY 10024 USA

212-769-5838
aheiss-at-amnh.org

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 1 Apr 2015 18:01:41 -0500
Subject: [Microscopy] viaWWW:Need to purchase a TEM with EDS any suggestions?

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Email: joseph.n.madary.civ-at-mail.mil
Name: nick madary

Organization: joint pathology center(US Gov)

Title-Subject: [Filtered] Need to purchase a TEM with EDS any suggestions?

Message: I am sorry if this as a duplicate. In the market for a TEM with EDS and top notch imaging.
If anyone has any suggestions on what not to buy and there are vendors out there please help. We do
strictly biologicals(but do have a need for elemental analysis some times).
regards, Nick

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From: tina-at-pbrc.hawaii.edu
Date: Wed, 1 Apr 2015 19:27:32 -0500
Subject: [Microscopy] Re: viaWWW:Need to purchase a TEM with EDS any suggestions?

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Hi, Nick-

I'm liking my Hitachi HT7700 all digital (no film) TEM. It strikes me as
being very suitable for pathology. Hitachi would probably be glad to put
you in contact with a couple of path labs I know of who bought one. EDS is
available for that TEM, but I do not have it.

Aloha,
Tina


}
} Email: joseph.n.madary.civ-at-mail.mil
} Name: nick madary
}
} Organization: joint pathology center(US Gov)
}
} Title-Subject: [Filtered] Need to purchase a TEM with EDS any suggestions?
}
} Message: I am sorry if this as a duplicate. In the market for a TEM with
} EDS and top notch imaging.
} If anyone has any suggestions on what not to buy and there are vendors out
} there please help. We do
} strictly biologicals(but do have a need for elemental analysis some times).
} regards, Nick
}
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****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: jpapalia-at-papalia.net
Date: Thu, 2 Apr 2015 04:14:25 -0500
Subject: [Microscopy] Re: viaWWW:Diagnosing problems with a carbon coater

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Dan,

Plenty of variables to consider, but perhaps most straight-forward is that if the seals in your roughing pump are as old as the jar seals AND it was sitting around with used oil in it, you probably should consider a pump rebuild since there's no telling how bad things might be inside the pump. You might also check out the literature on your pump if any is available to see what vacuum levels it's capable of when working perfectly so that you can determine a real target vacuum to aim for (not knowing the details of the pump, for all we know you're actually within spec, poor as it might be).

-John

On April 1, 2015 7:26:26 PM EDT,microscopylistserver-noreply-at-microscopy.com wrote:
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From: oshel1pe-at-cmich.edu
Date: Thu, 2 Apr 2015 08:56:50 -0500
Subject: [Microscopy] Re: viaWWW:TEM - MT2 Ultramicrotome Operation

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Aaron,

Do you have the manual? If not, I can send a pdf of it.
Basically, the knob on top is thickness in Ĺngstroms, and the thickness
wheel on the left is a multiplier of the knob value.
So: knob at 100 X wheel = thickness in Ĺngstroms
How accurate this is depends on how well maintained and how worn is your
MT-2. Particularly the Nylon block that rests on the advance screw.

Phil

} Email: aheiss-at-amnh.org
} Name: Aaron Heiss
}
} Organization: American Museum of Natural History
}
} Title-Subject: [Filtered] TEM - MT2 Ultramicrotome Operation
}
} Message: Hello all! I am a moderately experienced ultramicrotomist who learned on a Leica UC7, and
} subsequently used a Reichert-Jung Ultracut E. I'm now working with a Sorvall MT2, and while the
} unit is well-maintained and I can get good sections from it, I'm not sure exactly how thick it's
} cutting.* I know that the "main" setting is done with the knob on the top (which is marked for
} thickness in tens-of-Angstroms, better known as nanometres) but that this is affected by the wheel
} on the left of the front panel, and I'm not really sure how, or what to make of the markings (0 to
} 18). So, my question is this: how exactly does one set a precise thickness on the MT2?
}
} * Yes, I can use interference colours, or check the thickness of folds, but this only measures the
} thickness of the sections, not how much material was cut from the block. In other words, it doesn't
} account for compression, which is of course variable both before and after spreading (I use
} chloroform vapours for this). The amount cut from the block is important because I'm doing 3-D
} reconstruction of serial sections, which means that I need to know exactly how far apart the
} sections are in the block.
}
} TIA!
} Aaron
}
}
} Aaron A. Heiss, Ph.D.
} Gerstner Scholar and Lerner-Gray Fellow
} Eunsoo Kim Laboratory
} Department of Invertebrate Zoology
} American Museum of Natural History
} Central Park West at 79th Street
} New York, NY 10024 USA
}
} 212-769-5838
} aheiss-at-amnh.org
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: jhall-at-2spi.com
Date: Thu, 2 Apr 2015 10:26:42 -0500
Subject: [Microscopy] viaWWW:Diagnosing problems with a carbon coater

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Dan's right - There are a lot of variables to consider. I'll add a few more :)

The fact that your vacuum worsens as time elapses makes me wonder if it is backstreaming oil into your carbon coater. A quick check of the vacuum line should let you know. If it is, that's the first thing to take care of before you contaminate the whole system with oil.

Assuming there is no backstreaming occurring, if you have access to a vacuum meter, you might want to attach it directly to the pump and see what kind of vacuum the pump is pulling on its own (no coater, no vacuum tubing). That should tell you which side the problem is on. If you don't have a vacuum meter, try to find a second pump to try out on the system to confirm the vacuum you can pull.

If it's the pump, a rebuild or a new pump is probably the best option. My personal experience with rebuilds has been about 50/50, for what it's worth.

If the pump seems fine and the problem seems to be on the coater side, I would start by removing the bell jar and plugging the vacuum inlet in the chamber with a stopper to see again which side the problem is on - the chamber itself, or the internals. From there, it becomes a matter of trying to check seals to find the leak.

I hope that helps - best of luck!

Jeff


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Dan,

Plenty of variables to consider, but perhaps most straight-forward is that if the seals in your roughing pump are as old as the jar seals AND it was sitting around with used oil in it, you probably should consider a pump rebuild since there's no telling how bad things might be inside the pump. You might also check out the literature on your pump if any is available to see what vacuum levels it's capable of when working perfectly so that you can determine a real target vacuum to aim for (not knowing the details of the pump, for all we know you're actually within spec, poor as it might be).

-John

On April 1, 2015 7:26:26 PM EDT,microscopylistserver-noreply-at-microscopy.com wrote:
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--|Title-Subject: [Filtered] Diagnosing problems with a carbon coater
--|
--|Message: Our lab had an EMS 450 carbon coater sitting on the counter
--|top. I located the roughing pump in storage and am trying to make the
--|system operational. All electrical operation seems to be working. I
--|dumped out the old pump oil and replaced with new oil. Upon first
--|pumping down the system, the vacuum gauge leveled at 5x10-1 mbar. I
--|worked with the vacuum pump connections and was able to obtain 2x10-1
--|mbar. I ordered new seals for the jar that forms the vacuum chamber
--|[the old seals are at least 10yrs old]. The new seals just came in,
--|and there was no improvement to the level of vacuum. One of the
--|observations that I have made is that I obtain the best vacuum when I
--|turn on the system in the morning. If I leave the system running, the
--|vacuum level will steadily worsen, holding finally at 5x10-1 mbar.
--|Once I have cycled the system, I can never reach that level again
--|unless I wait until the next day.
--|
--|Any suggestions from the community? Do I have a pump problem or a
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15, 29 -- From jhall-at-2spi.com Thu Apr 2 10:26:42 2015
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 3 Apr 2015 07:41:01 -0500
Subject: [Microscopy] Fwd: [Filtered] MicroscopyListserverviaWWW: Denton DCP-1 critical

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Hi Phil -- I don't think we do have a manual -- and whether or not we do, a PDF would be most welcome!

I should've mentioned in my original post that I'd been told that the two numbers were multiplied, but I was beginning to suspect that I'd misunderstood. This is because I'd set the top knob to my desired thickness (50 nm in this case) and the front wheel to 1, and was getting no advance at all. Setting the front wheel to 2 gave different results depending on whether I'd dialed up or down to get there. Others have told me that the best practice is to set the top knob to something much lower and dial the front wheel up -- so for 50 nm I should set the top knob to 10 and the front wheel to 5, or vice versa. I'll give that a try and see if it works.

Many thanks, to you and to everyone else who responded via e-mail!!
Aaron


Aaron A. Heiss, Ph.D.
Gerstner Scholar and Lerner-Gray Fellow
Eunsoo Kim Laboratory
Department of Invertebrate Zoology
American Museum of Natural History
Central Park West at 79th Street
New York, NY 10024 USA

212-769-5838
aheiss-at-amnh.org


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Sent: April 2, 2015 9:56 AM
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Email: joseph.uknalis-at-ars.usda.gov
Name: Joe Uknalis

Organization: USDA

Title-Subject: [Filtered] Denton DCP-1 critical point dryer gasket

Message: I got replacement gaskets for the pressure chamber from Denton because the existing one was
very old (cracking, leaking). Popped the new one on and threw the old in the trash. The new ones
looked thicker than the old but I chalked it up to age...

Now when I bleed gas into the chamber the gasket pops out of place no matter how tight I screw down
the clamp. Mercifully at a low pressure { 50 psi.

Our instrument is pretty old, prob from 1972.
I got the sense that the new ones have a groove that the o-ring sits in...

Can anyone verify this?
Anyone know of a source for a slightly thinner O-ring that will fit??

thanks

Joe

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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 4 Apr 2015 17:07:12 -0500
Subject: [Microscopy] viaWWW:Postdoctoral Research Position at University of KwaZulu-Natal

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Email: Pruessner-at-ukzn.ac.za
Name: Karin Pruessner

Organization: University of KwaZulu-Natal

Title-Subject: [Filtered] Postdoctoral Research Position

Message: The University of KwaZulu-Natal in beautiful Durban, South Africa, is home to an
interdisciplinary Nanotechnology Platform consisting of 4 pillars in Nano Energy, Nano Materials,
Nano Health and Quantum. The Nano Energy pillar has a position available for a Postdoctoral
Researcher to be filled as soon as possible. Our team consists of Chemists, Physicists, Materials
Scientists, and Engineers. We are working on the development of an off-grid refrigeration unit for
rural areas in Africa.
We are looking for a Materials Scientist with a solid background in Materials Characterization to
join us. Neighboring fields will be considered. The successful candidate should have experience in
nanotechnology and at least one of the following areas:
• Nano Photovoltaics
• Nano Energy Storage
• Nano Cooling Fluids
• Graphene
Hands-on experience in X-Ray Diffraction, Scanning and Transmission Electron Microscopy and Raman
Spectroscopy is expected. Additional expertise in Materials Synthesis would be advantageous.
Interested candidates should send their electronic application materials to:
Dr Karin Pruessner, Coordinator Nano Energy
School of Chemistry and Physics
University of KwaZulu-Natal - Westville Campus
University Road
Durban, 4000
South Africa
Ph: ++27 31 260-7660
e-mail: Pruessner-at-ukzn.ac.za

The post is initially for one year with the possibility of renewal. Review of applications will
begin immediately.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 4 Apr 2015 17:08:21 -0500
Subject: [Microscopy] viaWWW:Bruker EDS system info needed

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Email: gary-at-gaugler.com
Name: Dr. Gary Gaugler

Organization: Here and there

Title-Subject: [Filtered] Bruker EDS system

Message: Does anyone know about this Bruker EDS system and what its used price might be? I assume
that it is an SDD. I'm not familiar with Bruker. Details of the system are below.

Bruker EDS detector

X-Flash Detector 3001: 10 mm2, FWHM { 129
Quantax single processing unit SVE
Quantax workstation class computer
Quantax IO-scan system and interface
Esprit integrated manual

Software for Bruker EDS:
Esprit Spectrum based
Esprit Quant
Esprit E-quant
Esprit HS-quant
Esprit Scan
Esprit Line
Esprit Map
Esprit Multi-point
Esprit Project
Esprit Report
Esprit SEMlink
Esprit U-quant

What is an SVE?

TIA,
gary g.


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From: rongchigram79-at-yahoo.com.sg
Date: Sun, 5 Apr 2015 09:35:49 -0500
Subject: [Microscopy] Anyone have tried both Gatan Cryo/ LN2 Cold Stage Holder Model 636

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Dear All, may i ask if any of you have the chance to try both
Gatan Cryo/ LN2 Cold Stage Holder Model 636 and CHDT3504? Are both holder performing equally well? Any pros and cons?

Cheers,
Yee Yan, Tay
Nanyang Technological University

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From: John-at-MicroVisionLabs.com
Date: Mon, 6 Apr 2015 10:00:45 -0500
Subject: [Microscopy] viaWWW:Bruker EDS system info needed

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Hi Gary,
My lab has two Bruker EDS systems and they are great. In my opinion they
are the best EDS systems on the market. Yes it has a silicon drift
detector. I don't know what SVE stands for. 10mm2 window is small but will
likely give you more counts than you are used to (50K to 100K cps). The
software options are all the most basic ones.

The big thing that is missing is the HyperMap option, which in my opinion is
one of the best things about the system. It allows you to go back to a map
you collected a year ago and change the element list or create an EDS
spectrum of a point or area on that map just like the sample were still in
the SEM. But I think Bruker will let you add that or any other software
option that you may want which is not already activated.

My guess is that the system is worth at least $15K to $20K depending on its
age and condition. The guy you want to talk to about this system is Robert
Brandon of Bruker (Robert.Brandom-at-bruker-axs.com). He is one of their sales
managers and has been very helpful to me in the past. Ted Juzwak,
Applications Lab Manager at Bruker (Ted.Juzwak-at-bruker-axs.com) is also a
wealth of information on these systems.

You don't see X-Flash systems on the used equipment market very often
though. They last a long time and are so good no one sells them to upgrade
to a better system because there isn't anything better.

Good luck,

John Knowles
President
MicroVision Laboratories
 

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Email: gary-at-gaugler.com
Name: Dr. Gary Gaugler

Organization: Here and there

Title-Subject: [Filtered] Bruker EDS system

Message: Does anyone know about this Bruker EDS system and what its used
price might be? I assume that it is an SDD. I'm not familiar with Bruker.
Details of the system are below.

Bruker EDS detector

X-Flash Detector 3001: 10 mm2, FWHM { 129 Quantax single processing unit SVE
Quantax workstation class computer Quantax IO-scan system and interface
Esprit integrated manual

Software for Bruker EDS:
Esprit Spectrum based
Esprit Quant
Esprit E-quant
Esprit HS-quant
Esprit Scan
Esprit Line
Esprit Map
Esprit Multi-point
Esprit Project
Esprit Report
Esprit SEMlink
Esprit U-quant

What is an SVE?

TIA,
gary g.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 7 Apr 2015 19:33:34 -0500
Subject: [Microscopy] viaWWW:which SEM should we buy for biological/zoological work?

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Email: scottserata-at-gmail.com
Name: Scott Serata

Organization: California Academy of Sciences

Title-Subject: [Filtered] which SEM should we buy for biological/zoological work?

Message: Hi, I am the SEM engineer at the California Academy of Sciences in San Francisco. We have
had a Zeiss/LEO 1450VP SEM for about 14 years. We are a zoological research organization with
specialists in Entomology, Arachnology, Botany, Invertebrate Zoology, Herpetology, etc. I am
starting the process of collecting information in order to purchase a new SEM. Any advice out there
from people who do similar work?

Also if anyone has any feedback about the quality of field service from Zeiss, Hitachi, JEOL, FEI, etc.

Our SEM is generally used for imaging specimens using the conventional high-vacuum SE detector.
Usually the specimens are coated using a gold/palladium sputter coater. We do need the ability to
image uncoated specimens using either VPSE (variable pressure) or BSD. Our biggest problem with the
old LEO 1450VP was the inability to get good sharp images on uncoated specimens due to charging. We
generally do not need to look at wet specimens so we do not need very high chamber pressures.
Currently I am looking at the Zeiss EVO MA 10 and the Hitachi SU 3500. We do not need any analytical
detectors (no Xray EDS, etc) Max magnifications are perhaps 100kX. Tungsten filament electron gun is
fine. We probably don't want to spend more than $200k. This is a big deal for us because we will
probably be stuck with this machine for another 14 years so we want to make the right decision!

Thank you for your time!
Scott Serata

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 8 Apr 2015 17:29:01 -0500
Subject: [Microscopy] viaWWW: Reply about SEM purchase

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Email: joseph.n.madary.civ-at-mail.mil
Name: Nick Madary

Organization: joint pathology center

Title-Subject: [Filtered] Reply about SEM purchase

Message: Hi Scott, You have come to the right place because I have had so much great info regarding
a TEM c EDS purchase. I will tell you actually using Hitachis, they are really good, I lean to the
3500 just because of my apps. JEOL has a nice table top model that is excellent as wel, you almost
do not even realize there is an SEM there, the computer screen is as large as the unit it seems. You
are in an enviable position. I see you have money, but if not, there are some gov surplus sites that
might have really decent scopes that were turned in due to BRAC. We will do one soon ourselves.
Zeiss has always been awesome at TEM,so if you can choose go with Hitachit or even that nice, new
small JEOL.

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From: krassimir.bozhilov-at-ucr.edu
Date: Thu, 9 Apr 2015 15:17:13 -0500
Subject: [Microscopy] Cameca Camebax MB1 available

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An old 1982, non-operational Cameca Camebax MB1electron microprobe is auctioned at a starting price of $10 by the Univ. of California at Riverside.

www.publicsurplus.com/sms/ucr,ca/auction/view?auc=1345354

Here is a brief description of the system:

Electron microprobe Cameca model Camebax MB1 with Tracor Northern ver. TN2000 electronic control console.
Max. accelerating voltage of 45 kV
Fitted with BSE detector, light microscope and three WDX spectrometers:
Spectrometer 1 fitted with LIF, PET, TAP, and OdPb crystals
Spectrometer 2 - PET and TAP
Spectrometer 3 -LIF and PET
Turbomolecular vacuum pump.
Documentation and some spare parts are available.

Krassimir Bozhilov

bozhilov-at-ucr.edu

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 9 Apr 2015 18:03:32 -0500
Subject: [Microscopy] viaWWW:Preparing gold samples for TEM

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Email: silverj-at-miamioh.edu
Name: Joshua Silverstein

Organization: Student

Title-Subject: [Filtered] Preparing gold samples for TEM

Message: Does anyone have experienced preparing gold samples for use in a TEM. I have FIB sections
but there seems to be gallium from the milling present on the surface. Contact me if you would like
to see the image. I understand that gold is very soft and keeping a natural texture is problematic.
Any advise would be great.



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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 9 Apr 2015 18:04:24 -0500
Subject: [Microscopy] viaWWW:Immunogold labeling

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Email: ravi.thakkar369-at-gmail.com
Name: Ravi

Title-Subject: [Filtered] Immunogold labeling

Message: I want to label toxin A & B in C. Difficile bacterial with immunogold, so which antigen
retrieval solution should I use or how to unmask the antigen before proceeding Immuno labeling on LR
whte sections.
Is there any universal or general method is available to unmask antigen or it should be antigen
specific.?

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From: zhiping_luo-at-hotmail.com
Date: Thu, 9 Apr 2015 20:15:09 -0500
Subject: [Microscopy] Research Associate Staff Position (mainly in EPMA) available at

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The Southeastern North Carolina Regional Microanalytical and Imaging Center (SENCR-MIC) at Fayetteville State University (FSU) is seeking applications for a Research Associate staff position, working primarily on a world-class Field-Emission Electron Probe Microanalyzer (EPMA) and a Scanning Electron Microscope (SEM), and other analytical  instruments including AFM, XRD. The initial position is for two years, while extension is possible contingent on the performance and funding.

The successful candidate will be responsible for the day to day operations and maintenance of instruments at SENCR-MIC under the supervision of the SENCR-MIC Director. Major duties include training diverse internal and external users on the instruments, providing technical assistance to users, conducting professional services based on user fees, teaching student labs for formal courses, and other duties assigned by the Director.

Requirements: Minimum of Master's Degree (Ph.D. preferred) in Geosciences, Materials Science, Engineering, Chemistry, Physics or other related disciplines. Experiences in EPMA or SEM analysis are required, and experiences in AFM, XRD and TEM are optimum. The successful candidate must be highly dedicated to professional services, possess outstanding oral and written communication skills, and must be able to work with a wide range of users including faculty, staff, visiting scientists and students under supervision of the Director.

Application to this position should be made online at https://jobs.uncfsu.edu/postings/10917.

Fayetteville State University is committed to equality of educational opportunity and employment and does not discriminate against applicants, students, or employees based on race, color, national origin, religion, sex, gender identity, sexual orientation, age, disability, genetic information or veteran status. Moreover, Fayetteville State University values diversity and actively seeks to recruit talented students, faculty, and staff from diverse backgrounds.






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9, 21 -- Subject: Research Associate Staff Position (mainly in EPMA) available at
9, 21 -- Fayetteville State University, North Carolina
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From: ph2-at-sprynet.com
Date: Thu, 9 Apr 2015 21:25:55 -0500
Subject: [Microscopy] 67th Annual Inter/Micro conference Chicago, IL

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

FYI

McCrone Research Institute cordially invites you to participate in the 67th
annual Inter/Micro conference by giving a presentation of your research
paper. We are accepting presentation abstracts in techniques and
instrumentation, environmental and industrial microscopy, and chemical and
forensic microscopy. Presentations will be held at McCrone Research
Institute on June 8-10.

The deadline to submit titles and abstracts is April 13, 2015. Click here
to register.

Speakers will receive a $50 conference registration discount!

http://www.mcri.org/v/101/InterMicro



Tony

.........................................
Andrew Anthony "Tony" Havics, CIH, PE
Environmental, Health & Safety, Microscopy, Materials Science & Forensic
Engineering
pH2, LLC
5250 E US Highway 36, Suite 830
Avon, IN 46123
(317) 718-7020 Office
(317) 718-7038 Fax
(317) 409-3238 Cell
aahavics-at-pH2LLC.com
www.ph2LLC.com

This message is from pH2. This message and any attachments may contain
legally privileged or confidential information, and are intended only for
the individual or entity identified above as the addressee. If you are not
the addressee, or if this message has been addressed to you in error, you
are not authorized to read, copy, or distribute this message and any
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other than the intended recipient(s) is not intended in any way to waive
confidentiality or a privilege. All personal messages express views only of
the sender, which are not to be attributed to pH2 and may not be copied or
distributed without this statement.



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From: vray-at-partbeamsystech.com
Date: Fri, 10 Apr 2015 10:08:22 -0500
Subject: [Microscopy] Looking for parts or parts or parts tool: XL-30, XL-40, or FIB-620

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear listers,

I am keeping alive (non-commercially) FIB-620 dual-beam FIB/SEM, which
is based on the platform of Phillips XL-30/XL-40 SEM and used for
student training and research projects that can't be done on brand-new
instruments.

To keep it going I am looking for following parts:

STMD board
FSDM board
FMSP/I board
Rotation stage gear

If anyone will be disposing off old XL-30 or XL-40 SEM, or FIB-620 FIB
I'd gladly accept it as "donation"

Thanks everyone beforehand,

--
Valery Ray - also with AIM/NISP Lab, UMDCP
=======================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844, USA
Phone: +1-978-296-5063
E-Mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com
UMD E-Mail: vray-at-umd.edu

==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 10 Apr 2015 18:07:20 -0500
Subject: [Microscopy] viaWWW:Access to User Facilities

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

X-from: roger.ristau-at-uconn.edu

This Question/Comment was submitted to the Microscopy Listserver
using the WWW based Form at http://microscopy.com/MicroscopyListserver/MLFormMail.html
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Email: roger.ristau-at-uconn.edu
Name: Roger Ristau

Organization: Univ of Connecticut

Title-Subject: [Filtered] Access to User Facilities

Message: I am looking for advice from the community about how access to microscope facilities is
granted to users. Specifically, I am thinking of something not quite so formal as the General User
Access Proposal process available at National Labs, but not as open as our existing "free-for-all"
where anyone who requests training can have open access.

I don't need advice on how to train users, rather, I need a fair process on how to determine who
should or should not become a user.

Does anyone have a policy/process they wish to share--off line if you like--that weighs user
requests? Perhaps a policy that includes various levels of access to users based on their needs and
skills?

And a follow-up question is the magic "silver bullet" of how to monitor users after training to
ensure that they are actually doing everything the way they were taught.

Thanks,
Roger Ristau
Univ of Connecticut

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From: wesaia-at-iastate.edu
Date: Fri, 10 Apr 2015 21:01:04 -0500
Subject: [Microscopy] viaWWW:Access to User Facilities

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Please send out a summary of replies once you get some. They can remain anonymous as far as I care.

We are probably a small enough lab that we have remained rather informal about access.

There are a few people that I have thought about redirecting away from the microscope as their brain just doesn't seem to be wired for that kind of work. I don't know if I have officially said anything out loud. Some seemed to have handed off SEM work to others in their research groups who are more adept.

Upon granting sign-up privileges, I advise new users whether they are free to sign up as they please or whether I would definitely like to be nearby for their next few sessions. Our reservation system, ORS, provides the option for ones to be a resource monitor by e-mail. I set that option for myself so I get notified about every change in the schedule. Most notices can be ignored. A few users are on my watch list. The delete button is easy to use for those that don't concern me.

We average about 25 hours of use per week. There is really no reason that ones HAVE to use the SEM outside of regular hours. A few users are granted or loaned keys for access at any time. Sometimes a last minute evening or weekend session is needed for a paper deadline, but that is unusual. We do allow users to come before we leave for the day and continue their session into the evening.

I do review photos occasionally from our users. Mostly I look at the images left on the SEM user interface and look deeper if I see signs of poor operation.

I plainly reference the cost of detectors during training and assure users that if they follow the standard operating procedures, they should have no problems. I also explain to them that the procedures need to be followed completely and in order. I worked hard to make the short form of the SOP short and practical. It is about 1-1/3 pages with another 2/3 page of common shortcut codes. And I tell them of some spectacular failures like ones that couldn't get an image and it was because they had failed to click the "Beam On" button on the UI.

I make it a point to refer users back to the written procedures. Otherwise I allow users to ask me too many questions and they never learn for themselves.

I hope these ideas help. I look forward to hearing what others have to say.

Warren Straszheim

-----Original Message-----
X-from: microscopylistserver-noreply-at-microscopy.com [mailto:microscopylistserver-noreply-at-microscopy.com]
Sent: Friday, April 10, 2015 6:09 PM
To: Straszheim, Warren E [BIOTC]

X-from: roger.ristau-at-uconn.edu

This Question/Comment was submitted to the Microscopy Listserver using the WWW based Form at http://microscopy.com/MicroscopyListserver/MLFormMail.html
---------------------------------------------------------------------------
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please copy both roger.ristau-at-uconn.edu as well as the Microscopy Listserver
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Email: roger.ristau-at-uconn.edu
Name: Roger Ristau

Organization: Univ of Connecticut

Title-Subject: [Filtered] Access to User Facilities

Message: I am looking for advice from the community about how access to microscope facilities is granted to users. Specifically, I am thinking of something not quite so formal as the General User Access Proposal process available at National Labs, but not as open as our existing "free-for-all"
where anyone who requests training can have open access.

I don't need advice on how to train users, rather, I need a fair process on how to determine who should or should not become a user.

Does anyone have a policy/process they wish to share--off line if you like--that weighs user requests? Perhaps a policy that includes various levels of access to users based on their needs and skills?

And a follow-up question is the magic "silver bullet" of how to monitor users after training to ensure that they are actually doing everything the way they were taught.

Thanks,
Roger Ristau
Univ of Connecticut

Login Host: 137.99.20.243
Listserver Email Form V - 20120416
---------------------------------------------------------------------------



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==============================Original Headers==============================
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32, 46 -- From: "Straszheim, Warren E [BIOTC]" {wesaia-at-iastate.edu}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 11 Apr 2015 09:17:25 -0500
Subject: [Microscopy] viaWWW:Access to user facilities

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Email: innap-at-savion.huji.ac.il
Name: Inna Popov

Organization: The Hebrew university of Jerusalem

Title-Subject: [Filtered] Access to user facilities

Message: I would say that it is important to identify those candidates which indeed have sufficient
amount of work to do on SEM. Those who need 2-3 "nice pictures" to get are potentially problematic
opertors with minor or zero motivation for learning and understanding the techique.
The next issue is to provide the users for the approach or some signs of right way to analyse their
samples. The idea is to assist users from the very beginning to find the right condition for
imaging/microanalysis/diffraction pattern/etc and to explain the reasons for the choice.
THe last important issue I would mention is interpersonal relations: it's better is the user
(especially the new one with no experience) will feel safe and compfortable to report about any
problem to the instrument/facility supervisor. Users always make mistakes, but to repair or to come
back to te source of the mistake is always easier if you get the whole story and it is done ASAP.
This is possible only if user does not afraid to report about a mistake. This also ensures that user
will be instructed properly how to avoid this same mistake in the future.
Good luck,
Inna

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From: tina-at-pbrc.hawaii.edu
Date: Sun, 12 Apr 2015 14:07:22 -0500
Subject: [Microscopy] viaWWW:Access to User Facilities

Contents Retrieved from Microscopy Listserver Archives
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I operate our SEM/TEM/confocal/epi/laser microdissection facility just
like Warren does, so he saved me a lot of typing! It mostly works.

Aloha,
Tina


} Please send out a summary of replies once you get some. They can remain anonymous as far as I care.
}
} We are probably a small enough lab that we have remained rather informal about access.
}
} There are a few people that I have thought about redirecting away from the microscope as their brain just doesn't seem to be wired for that kind of work. I don't know if I have officially said anything out loud. Some seemed to have handed off SEM work to others in their research groups who are more adept.
}
} Upon granting sign-up privileges, I advise new users whether they are free to sign up as they please or whether I would definitely like to be nearby for their next few sessions. Our reservation system, ORS, provides the option for ones to be a resource monitor by e-mail. I set that option for myself so I get notified about every change in the schedule. Most notices can be ignored. A few users are on my watch list. The delete button is easy to use for those that don't concern me.
}
} We average about 25 hours of use per week. There is really no reason that ones HAVE to use the SEM outside of regular hours. A few users are granted or loaned keys for access at any time. Sometimes a last minute evening or weekend session is needed for a paper deadline, but that is unusual. We do allow users to come before we leave for the day and continue their session into the evening.
}
} I do review photos occasionally from our users. Mostly I look at the images left on the SEM user interface and look deeper if I see signs of poor operation.
}
} I plainly reference the cost of detectors during training and assure users that if they follow the standard operating procedures, they should have no problems. I also explain to them that the procedures need to be followed completely and in order. I worked hard to make the short form of the SOP short and practical. It is about 1-1/3 pages with another 2/3 page of common shortcut codes. And I tell them of some spectacular failures like ones that couldn't get an image and it was because they had failed to click the "Beam On" button on the UI.
}
} I make it a point to refer users back to the written procedures. Otherwise I allow users to ask me too many questions and they never learn for themselves.
}
} I hope these ideas help. I look forward to hearing what others have to say.
}
} Warren Straszheim
}
} -----Original Message-----
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} Subject: [Microscopy] viaWWW:Access to User Facilities
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} Email: roger.ristau-at-uconn.edu
} Name: Roger Ristau
}
} Organization: Univ of Connecticut
}
} Title-Subject: [Filtered] Access to User Facilities
}
} Message: I am looking for advice from the community about how access to microscope facilities is granted to users. Specifically, I am thinking of something not quite so formal as the General User Access Proposal process available at National Labs, but not as open as our existing "free-for-all"
} where anyone who requests training can have open access.
}
} I don't need advice on how to train users, rather, I need a fair process on how to determine who should or should not become a user.
}
} Does anyone have a policy/process they wish to share--off line if you like--that weighs user requests? Perhaps a policy that includes various levels of access to users based on their needs and skills?
}
} And a follow-up question is the magic "silver bullet" of how to monitor users after training to ensure that they are actually doing everything the way they were taught.
}
} Thanks,
} Roger Ristau
} Univ of Connecticut
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****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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5, 22 -- From tina-at-pbrc.hawaii.edu Sun Apr 12 14:07:21 2015
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From: rdpierce-at-pobox.com
Date: Sun, 12 Apr 2015 14:56:22 -0500
Subject: [Microscopy] Re: viaWWW:Access to User Facilities

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I'm in an unusual environment: a makerspace or hackerspace in Chicago, which to my knowledge has the most public access policy of any SEM.

Any adult can join for $40/month which gets them 24x7 access to the SEM, as well as access to the rest of the tools in the space.

I can't assume any science background with people who want to use it. I've put together a 3 hour PowerPoint course, which is a prerequisite. Then I schedule about 1 1/2 hours of hands on training. Then they are free to use the scope without supervision.

Generally, there is some level of self selection because there is a time commitment to go through this. Still, I find that many people don't come back and use it. This is true of many of the tools at the space. People see a scarcity of training classes on, say, the milling machine or our large CNC router, and they sign up just in case, even if they don't have a project that could use it. We haven't found a good way around this problem, and with nearly 400 members, and all tool authorizations done by volunteers, it is a source of stress for the organization.

I have put in place a tiered access structure for the SEM, and right now have only implemented the bottom tier. This training doesn't permit users to change samples, use the sputter coater, critical point dryer, backscatter detector, or EDX. Users need to work with me to prep samples, so I can make sure nobody is going to put something wet or that will outgas in the chamber. Many of the users just want to see how a SEM works, so I keep interesting samples in the chamber at all times.

So far, the only user breakage problem I've had was someone who couldn't differentiate between first and second peak, and kept raising filament current until it blew. Not that big a deal.

That's also why I've been nervous about letting anyone do sample prep, risk running the sample into the BSD, or have a liquid nitrogen accident with the EDX. Also, our sputter coater is very finicky, and the Ar pressure difference between the plasma extinguishing and the power supply overloading is quite difficult to maintain with the needle valve. Additionally I may have been too hasty buying a CPD; we don't have a fume hood, so I'm not comfortable fixing wet samples in glutaraldehyde, and we've done absolutely nothing with wet samples. (I also don't have formal training myself, and I've been hoping to find a mentor in the Chicago area to help out.)

Cheers,
Ryan
I'm in an unusual environment: a makerspace or hackerspace in Chicago, which to my knowledge has the most public access policy of any SEM.

Any adult can join for $40/month which gets them 24x7 access to the SEM, as well as access to the rest of the tools in the space.

I can't assume any science background with people who want to use it. I've put together a 3 hour PowerPoint course, which is a prerequisite. Then I schedule about 1 1/2 hours of hands on training. Then they are free to use the scope without supervision.

Generally, there is some level of self selection because there is a time commitment to go through this. Still, I find that many people don't come back and use it. This is true of many of the tools at the space. People see a scarcity of training classes on, say, the milling machine or our large CNC router, and they sign up just in case, even if they don't have a project that could use it. We haven't found a good way around this problem, and with nearly 400 members, and all tool authorizations done by volunteers, it is a source of stress for the organization.

I have put in place a tiered access structure for the SEM, and right now have only implemented the bottom tier. This training doesn't permit users to change samples, use the sputter coater, critical point dryer, backscatter detector, or EDX. Users need to work with me to prep samples, so I can make sure nobody is going to put something wet or that will outgas in the chamber. Many of the users just want to see how a SEM works, so I keep interesting samples in the chamber at all times.

So far, the only user breakage problem I've had was someone who couldn't differentiate between first and second peak, and kept raising filament current until it blew. Not that big a deal.

That's also why I've been nervous about letting anyone do sample prep, risk running the sample into the BSD, or have a liquid nitrogen accident with the EDX. Also, our sputter coater is very finicky, and the Ar pressure difference between the plasma extinguishing and the power supply overloading is quite difficult to maintain with the needle valve. Additionally I may have been too hasty buying a CPD; we don't have a fume hood, so I'm not comfortable fixing wet samples in glutaraldehyde, and we've done absolutely nothing with wet samples. (I also don't have formal training myself, and I've been hoping to find a mentor in the Chicago area to help out.)

Cheers,
Ryan

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 13 Apr 2015 16:32:45 -0500
Subject: [Microscopy] viaWWW:4th VIB Summer School in Advanced Light Microscopy in Ghent

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Email: chris.guerin-at-irc.vib-ugent.be
Name: Chris Guerin

Organization: VIB

Title-Subject: [Filtered] Summer school microscopy in Ghent

Message: Hello Everyone:

I am pleased to announce that the 4th VIB Summer School in Advanced Light Microscopy will take
place in the beautiful city of Ghent Belgium the week of June 15th. This course will give users both
practical and theoretical background on the proper use of microscopes in biological research as well
as introduce them to how to use imaging to obtain functional information from cells and tissues. The
uses of advanced techniques such as FRET/FLIM, FRAP, TIRF, Super-resolution, and correlative light
and electron microscopy will be explained and demonstrated. Hands on practical sessions will allow
students to use and observe advanced microscope systems and to understand the best ways to design
and carry out modern bioimaging. The final day will be dedicated to data analysis and interpretation
of microscope generated data sets. This year the faculty of expert microscopists will include:
Chris Guerin, VIB - Ghent University, Belgium
Sebastian Munck, VIB - KU Leuven, Belgium
Peter O’Toole, University of York, UK
Bob Asselbergh, University of Antwerp, Belgium
Stefan Vinckier, VIB - KU Leuven, Belgium
Spencer Shorte, Institut Pasteur, France
Lucy Collinson, London Research Institute, UK
Andreas Schertel, Carl Zeiss, Germany
Jean-Yves Tinevez, Institut Pasteur, France
Eef Parthoens, VIB - Ghent University, Belgium
You can see the full program and register at
http://www.vib.be/en/training/research-training/courses/Pages/Summer-School-in-Advanced-Light-Microscopy.aspx.
The course is limited to 32 participants and a simple application is required in case, (as in
previous years), that the number of interested people exceeds our capacity. Registration is €450 for
the week long course and includes a daily lunch and dinner Mon, Tues and Thurs. evenings. We look
forward to welcoming you to Ghent.

best wishes,

Chris GuĂŠrin
Manager, VIB Bio Imaging Core Ghent

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 13 Apr 2015 16:33:36 -0500
Subject: [Microscopy] viaWWW:Access to User Facilities

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X-from: ravi.thakkar369-at-gmail.com

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Email: ravi.thakkar369-at-gmail.com
Name: Ravi

Organization: Kansas State University

Title-Subject: [Microscopy] viaWWW:Access to User Facilities

Message: Hi Roger,
I have 6 years of experience in EM lab management. I was giving training to 5 user for TEM operation
per semester. First step, I will define their real need of EM based on research activity and average
usage of their research
group.

1. I used to call user for 6 hours (2 hours per consecutive 3 days) for observation only.
2. One week step wise training (focusing, imaging, sample change, how to switch on-off machine).
3. Written test (10-15 MCQ on TEM operation) one assignment on SOP to operate TEM. (I never use to
give them SOP, they have to make themselves and it has to approved by lab manager before use.)
4. Practical test on TEM by lab manager.

Permission to use TEM withdrawn, If any qualified user make three mistake (left the machine without
following proper closing procedure, drastic change in alignment) and fail to report any incident or
error.

Ravi.

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From: john.mitchels-at-gmail.com
Date: Tue, 14 Apr 2015 13:28:44 -0500
Subject: [Microscopy] Free to good home Ion Mill, Dimple Grinder and Electro jet polishers (UK)

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Dear Listers

Before you get to excited we are based in the UK in Bath and we would
expect anyone who wants these items to collect them at their expense.
I will give priority to people who want whole items but should any of
you want parts let me know and if no takers for the whole thing then
they are yours.

We have a Gatan Duo Ion Mill 600 diff pumped with sector and cryo
cooler. It works but is getting tired so I will say 'spares or repair'
It comes with a large assortment of consumables. If anyone want the
whole thing then fine otherwise I am willing to offer the parts on
first come first serve basis.

We also have a vintage dimple grinder and core drill. If these are any
good to any of you then you are welcome to it but when I say vintage I
mean 1981! it still works.

We also have some struers tenupol 2 systems again vintage but functional.

I look forward to hearing from you if you can save these from the scrap pile.

John

==============================Original Headers==============================
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7, 26 -- Subject: Free to good home Ion Mill, Dimple Grinder and Electro jet polishers (UK)
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 14 Apr 2015 20:14:14 -0500
Subject: [Microscopy] viaWWW:Summer School on Electron Diffraction

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X-from: roy.geiss-at-colostate.edu

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Email: roy.geiss-at-colostate.edu
Name: ROy Geiss

Organization: Colorado State University

Title-Subject: [Filtered] Summer School on Electron Diffraction

Message: Just a reminder that Wednesday, April 15 is the last day to register for the upcoming
Summer School on Electron Diffraction at Colorado State University from May 19 to May 21, 2015.
For a flyer, the program, and registration materials please go to: http://cif.colostate.edu/ and
follow the links to the Summer school.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 16 Apr 2015 08:27:16 -0500
Subject: [Microscopy] viaWWW:Edwards 1105 vacuum controller

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X-from: gpoirier-at-mus-nature.ca

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Email: gpoirier-at-mus-nature.ca
Name: Glenn Poirier

Organization: Canadian Museum of Nature

Title-Subject: [Filtered] Edwards 1105 vacuum controller

Message: Are there any Canadian listers out there who are using an Edwards 1105 vacuum controller.
I've bought one with gauges off ebay, but it doesn't have UL or CSA inspection stickers so the
university won't approve me using it. If anyone has one in use a photo of the back with the stickers
would go a long way towards getting it approved.

Thanks in advance for any help

Glenn

I do subscribe to the list but my institution insists on attaching advertising to the bottom of all
my email, thus ensuring rejection by the very effective spam filters

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From: sergei2-at-ornl.gov
Date: Thu, 16 Apr 2015 16:21:38 -0500
Subject: [Microscopy] Workshop - Big, Deep, and Smart Data Analytics in Materials Imaging

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Dear colleagues

We would like to bring your attention to the workshop "Big, Deep, and
Smart Data Analytics in Materials Imaging" organized jointly by the five
DOE Nanoscale Science Research Centers (Program Committee: E. Stach, J.
Werner, D. Miller, S.V. Kalinin and J. Schuck) and to be held at Oak
Ridge National Laboratory on June 8-10. This workshop will bring
together researchers from different imaging disciplines (electron
microscopy, scanning probe microscopy, focused x-ray, neutron, atom
probe tomography, chemical imaging, optical microscopies) as well as
experts in mathematical/statistical/computational approaches to discuss
opportunities and future needs in the integration of advanced data
analytics and theory into imaging science. It will provide a forum to
present achievements in the various imaging disciplines with emphasis on
acquisition, visualization, and analysis of multidimensional data sets,
the corresponding approaches for theory-experiment matching, and novel
opportunities for instrumental development enabled by the availability
of high speed data analytic tools. Additional information regarding this
workshop will be posted at the http://www.cnms.ornl.gov/JointNSRC2015/.

Please address questions to Amanda Zetans, zetansac-at-ornl.gov
{mailto:zetansac-at-ornl.gov} , 865.241.1182.

On behalf of the organizers,

Sergei

--
Sergei V. Kalinin

Director,
Institute for Functional Imaging of Materials

Theme Leader,
Center for Nanophase Materials Science

Oak Ridge National Laboratory

Phone: (865) 241-0236


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Subject: [Microscopy] viaWWW:embedding yeast

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Message: I always have problems embedding/infiltrating yeast!!! have tried different resins, vacuum
steps,etc.. does anyone have an embedding protocol/resin that works??!!!
thanks for sharing
sue

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 17 Apr 2015 07:30:38 -0500
Subject: [Microscopy] viaWWW:Postdoctoral position in energy materials

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Title-Subject: [Filtered] Postdoctoral poasition in energy materials

Message: The University of KwaZulu-Natal in Durban, South Africa, is home to an interdisciplinary
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The university houses an Electron Microscopy Unit. XRD and Raman Spectroscopy are available in the
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Interested candidates should send their electronic application materials to:
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From: ZZhang-at-uwyo.edu
Date: Fri, 17 Apr 2015 09:33:44 -0500
Subject: [Microscopy] viaWWW:embedding yeast

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Hi Sue:

Not sure what type of yeast you work with. We work with budding yeast and have been had good luck with microwave radiation, especially for stationary yeast, of which the cell wall is very tough.
http://www.ncbi.nlm.nih.gov/pubmed/17156022

For log-phase cells, extended infiltration (at least one overnight) works fine using Spurr. I believe the low viscosity of Spurr helps.

Best luck and let me know if you need a reprint.

Zhaojie Zhang
University of Wyoming


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Title-Subject: [Filtered] embedding yeast

Message: I always have problems embedding/infiltrating yeast!!! have tried different resins, vacuum steps,etc.. does anyone have an embedding protocol/resin that works??!!!
thanks for sharing
sue

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From: Reinhard.Rachel-at-biologie.uni-regensburg.de
Date: Fri, 17 Apr 2015 09:48:00 -0500
Subject: [Microscopy] yeast

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dear Sue,
there are many resources in the web concerning the (tricky) task to properly
embed yeast cells for ultrathin sectioning.
my favourite ones, as of today:
Mary's manual (Boulder, CO, USA):
http://bio3d.colorado.edu/docs/mmanual.pdf
then
Giddings, T. H., Jr., O’Toole, E. T., Morphew, M., Mastronarde, D. N.,
McIntosh, J. R., and Winey, M.
(2001). Using rapid freeze and freeze-substitution for the preparation of
yeast cells for electron microscopy
and three-dimensional analysis. Methods Cell Biol. 67, 27–42
(yes, Mary is one of the co-authors),
and
Kent L McDonald - Out with the old and in with the new: rapid specimen
preparation procedures for electron microscopy of sectioned biological
material, -- Protoplasma (2014) 251:429–448 DOI 10.1007/s00709-013-0575-y.
This article is quite helpful as it shows that some of the paradigms of 'old'
embedding protocols are clearly out-dated, if not to say "wrong".
It also depends on your equipment, the specific question, and so on.
kind regards - reinhard


--
Prof. Dr. Reinhard Rachel
University of Regensburg
Centre for EM / Anatomy
Faculty of Biology & Preclin. Med.
Universitaetsstrasse 31
D-93053 Regensburg - Germany
tel +49 941 943 -2837, -1720
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29

Next microscopy conferences:
http://www.mc2015.de
DGE - Microscopy Conference 2015, Sept 6-11, GĂśttingen
http://www.emc2016.fr/en/
16th Europ Microsc Congress EMC 2016 in Lyon, FR
next Microbiol. conferences:
VAAM - Annual Conf March 13-16, 2016, Jena



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From: John.Mardinly-at-asu.edu
Date: Fri, 17 Apr 2015 12:11:41 -0500
Subject: [Microscopy] Tuesday Marked the 75th Anniversary of the Introduction of the RCA

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http://www.edn.com/electronics-blogs/edn-moments/4429862/RCA-demonstrates-electron-microscope--April-14--1940?_mc=NL_EDN_EDT_EDN_funfriday_20150417&cid=NL_EDN_EDT_EDN_funfriday_20150417&elq=22c11d7a3bd7475d9e993ac862fc83e5&elqCampaignId=22606&elqaid=25423&elqat=1&elqTrackId=9c9a0a2f0b714cf4b2fbf175bb1d18c3

John Mardinly, ASU



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From: nmz787-at-gmail.com
Date: Fri, 17 Apr 2015 16:08:19 -0500
Subject: [Microscopy] Fwd: Looking for manual/schematics for: Jeol JSM-T200 SEM

Contents Retrieved from Microscopy Listserver Archives
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Hi folks,
I am acquiring a Jeol JSM-T200 SEM and wanted to try and
dig up some info on it, or similar models. Mainly interested in the
raster scanning circuitry, as this seems to need some work or possibly
be re-implemented from scratch.

Any info would be helpful, at this point I've acquired the
user-manual... so I guess I'm looking for the service-manual now.

I'll even take info on similar models, since that is likely better
than having no clues at all!

Thanks,
-Nathan


--
-Nathan

==============================Original Headers==============================
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From: zaluzec-at-microscopy.com
Date: Mon, 20 Apr 2015 12:52:29 -0500
Subject: [Microscopy] viaWWW:JEOL 6400 SEM Diffusion pump heater element

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X-from: martin.roe-at-nottingham.ac.uk

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Email: martin.roe-at-nottingham.ac.uk
Name: Martin Roe

Organization: Nottingham University

Title-Subject: [Filtered] JEOL 6400 SEM Diffusion pump heater element

Message: Dear Listservers,
Does anyone have a spare diffusion pump heater element for a JEOL 6400
SEM? There are two diff pumps on the instrument and it is the larger of
the two that has the heater problem. The original part number of the
heater is 322000025 and is 4 inches in diameter (rated at 200V/600W)
with what seemed like “TK” written on it.
Would be willing to pay for the part and shipment of it.
Thanks,
Martin

Martin Roe
Department of Mechanical, Materials & Manufacturing
Faculty of Engineering
University of Nottingham,
Wolfson Building,
University Park,
Nottingham,
NG7 2RD, UK



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From: nicholas.ritchie-at-nist.gov
Date: Tue, 21 Apr 2015 12:40:34 -0500
Subject: [Microscopy] NIST DTSA-II Iona released & high precision quant with an SDD

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

NIST DTSA-II has recently been updated to version Iona. (Download for free from http://www.cstl.nist.gov/div837/837.02/epq/dtsa2/index.html) DTSA-II provides a host of tools for quantitative EDS microanalysis including quantification, simulation and measurement planning. Iona has a host of improvements both large and small which are detailed in the release notes on the web site.

Further details on quantitative analysis with NIST DTSA-II are available in Newbury & Ritchie's J. Mat Sc. Article "Performing elemental microanalysis with high accuracy and high precision by scanning electron microscopy/silicon drift detector energy-dispersive X-ray spectrometry (SEM/SDD-EDS)" (free for download from http://link.springer.com/article/10.1007/s10853-014-8685-2 ). This article demonstrates the potential of the modern EDS detector to perform reliable, quantitatively accurate compositional measurements even for some very challenging samples.




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From: wesaia-at-iastate.edu
Date: Tue, 21 Apr 2015 18:03:17 -0500
Subject: [Microscopy] Problem with Auger gun startup

Contents Retrieved from Microscopy Listserver Archives
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A colleague has an old JEOL JAM-7830 Auger microprobe. He has had troubles starting it back up after the last couple power outages. The system fails to recognize the field emission gun and instead thinks it has a LaB6 source.

He has been able to stumble around and eventually get it to work by trying various things, but the results are not immediately obvious and he is not clear which steps have been effective and necessary or if the order of steps is important.

Does anyone have experience with this problem on a 7830 and have some suggestions for him? We thank you in advance.

Warren Straszheim
Ames Lab/Iowa State University


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From: frank_karl-at-ardl.com
Date: Thu, 23 Apr 2015 13:02:41 -0500
Subject: [Microscopy] Stereomicroscope and cameria

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I find myself in a little bit of a quandary. ARDL would like to upgrade our low to medium light imaging capacity. One of the quandaries is the fellow with the purse strings has demands. He wants a simple imaging system with the highest resolution at a reasonable price.

I'm looking for a stereomicroscope with a good, flat field, corrected lens for color and aberration. A course and fine focus would be well received as would a translumination base, but these are not deal breakers. I'd like a camera with about 5-12 megapixals. I'd like software with some basic annotating features, image processing ability and measurement functions. The software should have file storage system suitable for both scientific and legal applications.

If you're a vendor, if you have experience with these systems, if you have an axe to grind or just want to get in on the conversation please get in touch with me. I'd like to get demos if possible.

It's been suggest we are in a rush to spend money, but......I understand the reputation we have with the closed purse. I don't think I have to say anything else.


Thank you!

Frank Karl
ARDL
Frank_karl-at-ARDL.com
330-794-6600

This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.



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10, 28 -- Subject: Stereomicroscope and cameria
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From: bfoster-at-the-mip.com
Date: Thu, 23 Apr 2015 17:42:58 -0500
Subject: [Microscopy] Re: Stereomicroscope and cameria

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, Frank

Re: Microscope - I'm sure that a number of vendors will contact you
Re: Camera + SW - have forwarded your request to a colleague who specializes in that area and has some clever solution

One thing to consider which is economical and also dramatically expands your stereomicroscopy is the fluorescence system from Nightsea (Nightsea.com ... Caveat: No financial interest). It has been interesting to see the response at a variety of meetings I've attended over the last 6 months. Although fluorescence came up through the ranks via the Life Sciences, there are intriguing applications in materials sciences as well. I remember looking at pockets/bubbles in an elastomer to determine if they had air or gel. As I remember, the gel fluoresced. Also great when used with fluorescent dyes for imaging surface cracks/defects. Nightsea's inventor, Dr. Charlie Mazel, is always interested in looking at new things. I recommend giving him a call and sending him some samples to see if this should be part of your planned upgrade.

Hope this was helpful.

Good hunting!
Barbara Foster, President & Chief Consultant
Microscopy/Microscopy Education ... "Education, not Training"
7101 Royal Glen Trail, Suite A - McKinney, TX 75070 - P: 972-924-5310
www.MicroscopyEducation.com


NEW! Getting involved in Raman or FTIR?
MME is now offering courses in these areas specifically for microscopists!
Now scheduling courses through the end of 2015. We can customize a course on nearly any topic, from fluorescence to confocal to image analysis to SEM/TEM.
Call today for a free training evaluation.















} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America


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From: bryan-at-systap.com
Date: Thu, 23 Apr 2015 19:23:37 -0500
Subject: [Microscopy] Sought: diode and diode holder (for GW 113A BSE detector for Hitachi S-800)

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Does anyone have a spare diode holder (preferably with diode) for the
GW 113A backscatter detector?

This is for an S-800 that I have been restoring for the past year for
personal / educational use. I have the GW arm, the 113A electronics,
and the external beam monitor electronics (for compensate for the cold
field emission tip).

Any help in sourcing the diode holder / diode would be appreciated.
Even drawings of this diode holder would be helpful since I could
always make one up!

Kindly reply off-list to minimize traffic.

Thanks in advance,
Bryan

bryan-at-systap.com

4501 Tower Road
Greensboro NC, USA

==============================Original Headers==============================
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7, 28 -- Subject: Sought: diode and diode holder (for GW 113A BSE detector for Hitachi S-800)
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From: mdelann1-at-jhmi.edu
Date: Fri, 24 Apr 2015 12:51:27 -0500
Subject: [Microscopy] Position announcement

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello,
We are seeking a Microscopy Facility Specialist here at the Johns Hopkins
School of Medicine Microscope Facility, Baltimore MD.
The main focus is on fluorescence and confocal microscopy operation,
training and maintenance, with emphasis on computer based analysis.
All interested parties should apply at:
https://hrnt.jhu.edu/jhujobs/job_view.cfm?view_req_id=64229&view=sch

We look forward to reading your resumes.

Sincerely,
Michael Delannoy
Assoc. Director
JHU SOM Microscope Facility


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4, 21 -- Cc: "Scot C. Kuo" {skuo-at-jhu.edu}
4, 21 -- Subject: Position announcement
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From: john.mitchels-at-gmail.com
Date: Mon, 27 Apr 2015 11:19:34 -0500
Subject: [Microscopy] Materials Microscopy Specialist Position Bath, UK

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Listers

The University of Bath's Microscopy and Analysis Facility (in the UK)
is looking for a microscopy specialist to look after users from
chemistry, physics and engineering. The job is advertised at the
following link. Note the deadline is the 10th May with interviews on
the 18th ideally. The role will be to look after the suite collection
of electron microscopes. Candidates with experience of maintenance of
older equipment, elemental analysis, diffraction analysis and if
possible Raman, FTIR, and SPM knowledge.

This link is for the job:
http://www.bath.ac.uk/jobs/Vacancy.aspx?ref=SS3127

This link is for the suite:
http://www.bath.ac.uk/facilities/mas

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From: jkrupp-at-deltacollege.edu
Date: Mon, 27 Apr 2015 15:15:58 -0500
Subject: [Microscopy] Computer updates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear all:

I would like to revisit the problem of old software, computers, and institutional support.

We have many instruments that run on proprietary software that has not been upgraded to more modern operating systems.

For example, some of our instruments use programs only compatible with Windows XP.

Our IT guys want to 'upgrade' all campus computers to a newer operating system and don't want any old machines running.

Is it reasonable to tell them that we need our old XP (and earlier) computers to keep our instruments running.

What would be a good approach to satisfy their urge to stay current and our need to live in the past?

Thanks

Jon

Jonathan Krupp
Applied Science, Business & Technology
San Joaquin Delta College
5151 Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu

Find us on Facebook -at-
Electron Microscopy at SJ Delta College










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From: dcromey-at-email.arizona.edu
Date: Mon, 27 Apr 2015 15:50:11 -0500
Subject: [Microscopy] Computer updates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jon,

I think all of us feel your pain. Having done both microscopy and systems administration I empathize on both sides of the equation.

The IT staff often don't "get" that you have a valuable piece of scientific equipment that will continue to work for many years (and which people NEED to use for their education or research interests), but will never again run an up-to-date operating system. Contrary to popular belief, you aren't being a Luddite, you are stuck with something that will break if the OS is upgraded and you can't afford to break it or replace it with a newer piece of equipment.

X-from the IT perspective they are looking at a computer that will no longer receive security patches and whose antivirus support has already or is about to run out. Understandably, they want it off their network.

With even flash drives being capable of transmitting viruses, you need a way for people to use the equipment, but not have a way for the computer to become infected.

You might also need backup hardware that can still run Windows XP (some labs at the University here have a small stockpile of XP compatible computers as fallbacks). At minimum you should consider regularly creating disk images of the hard drive(s) to ensure that you can recreate the setup when some of the hardware fails (it's not getting any younger). Old hardware drivers can be difficult to find, especially if they came on manufacturer's CDs or floppies that you may or may not be able to locate in a crisis.

What some labs have done is create a private network with a file server. The file server uses a current/secure OS and is where users on all the old computers store their files. The server can share the files out to the larger network via one connection, while firewalling the private network (where all the WinXP, Win2K, etc computers live) that the server is connected to via a different connection. In other words. The file server has two network cards. Users can no longer use floppies or USB devices on the old computers, they can only physically connect to the server.

Depending on how your building wiring was done, the IT folks may be able to create the private network using the building's network switch, without the need for physical rewiring.

There may be other ways, but this seems like the most viable to me. It will take some money and expertise to pull off, but the alternative is worse...

Doug

------------------------------------------------------------------------------------------
Douglas W. Cromey, M.S. - Associate Scientific Investigator
Dept. of Cellular & Molecular Medicine, University of Arizona
1501 N. Campbell Ave, Tucson, AZ 85724-5044 USA

office: UACC 0914A email: dcromey-at-email.arizona.edu
voice: 520-626-2824 fax: 520-626-2097

http://swehsc.pharmacy.arizona.edu/micro
Home of: "Microscopy and Imaging Resources on the WWW"

UA Microscopy Alliance - http://microscopy.arizona.edu

-----Original Message-----
X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
Sent: Monday, April 27, 2015 1:16 PM
To: Cromey, Douglas W - (dcromey)

Dear all:

I would like to revisit the problem of old software, computers, and institutional support.

We have many instruments that run on proprietary software that has not been upgraded to more modern operating systems.

For example, some of our instruments use programs only compatible with Windows XP.

Our IT guys want to 'upgrade' all campus computers to a newer operating system and don't want any old machines running.

Is it reasonable to tell them that we need our old XP (and earlier) computers to keep our instruments running.

What would be a good approach to satisfy their urge to stay current and our need to live in the past?

Thanks

Jon

Jonathan Krupp
Applied Science, Business & Technology
San Joaquin Delta College
5151 Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu

Find us on Facebook -at-
Electron Microscopy at SJ Delta College










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From: oshel1pe-at-cmich.edu
Date: Mon, 27 Apr 2015 15:54:52 -0500
Subject: [Microscopy] Re: Computer updates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

John,

It's perfectly reasonable to tell the IT people you need XP or whatever
to keep your instruments running. We're in the same boat with one of our
confocals.
A good approach to satisfy their need to upgrade and your need to not
upgrade is to offer to let them pay for upgrading the hardware
(computers) and software running your instruments.
Or to not pay for the upgrades and leave you with your current systems
on instruments.

Phil


} Dear all:
}
} I would like to revisit the problem of old software, computers, and institutional support.
}
} We have many instruments that run on proprietary software that has not been upgraded to more modern operating systems.
}
} For example, some of our instruments use programs only compatible with Windows XP.
}
} Our IT guys want to 'upgrade' all campus computers to a newer operating system and don't want any old machines running.
}
} Is it reasonable to tell them that we need our old XP (and earlier) computers to keep our instruments running.
}
} What would be a good approach to satisfy their urge to stay current and our need to live in the past?
}
} Thanks
}
} Jon
}
} Jonathan Krupp
} Applied Science, Business& Technology
} San Joaquin Delta College
} 5151 Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
} Find us on Facebook -at-
} Electron Microscopy at SJ Delta College
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: jtwilley-at-sprynet.com
Date: Mon, 27 Apr 2015 17:08:18 -0500
Subject: [Microscopy] Re: Computer updates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Jon,

The volume involved in consumer manufacturing makes computer equipment cheap and expendable. That does not make it a reasonable proposition to scrap specialized equipment that lacks the economies of scale. Specialized instrumentation is neither cheap nor expendable. If the IT unit has difficulty understanding this, since you are at a college, you might consider getting an Econ faculty member involved who could assign a student project to evaluate the economics of the two alternatives: 1) isolate the security risks with a closed network running older operating systems; 2) scrap and replace with new instrumentation. Part of the cost of alternative #1 is that the interface boards from the scope manufacturer's may go out of production and repairs involving the interfaces may become more expensive for that reason. However, if the manufacturers know that numbers of their clients are addressing the software obsolescence problem with well-maintained older operating systems, pressure to hustle older systems off to the junkpile may diminish.

The rush to scrap and replace, solely for operating system compatibility issues, fails on all sorts of sustainability and economic grounds.

John Twilley

Consulting Scientist, New York


-----Original Message-----
} From: jkrupp-at-deltacollege.edu
} Sent: Apr 27, 2015 4:16 PM
} To: jtwilley-at-sprynet.com
} Subject: [Microscopy] Computer updates
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America



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From: Duane.Harland-at-agresearch.co.nz
Date: Mon, 27 Apr 2015 19:57:35 -0500
Subject: [Microscopy] Computer updates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Jon

Yes a common pain from time to time.
I'll just bullet point a couple of thoughts/discussion points (based on my lab's experiences)

1. dedicated control computers are part of an instrument. An upgrade of the computer part of the instrument implies IT needs to make sure that the device it attaches to still works ok - let them deal with the vendor (if a Win7, virus checker, security update friendly solution exists then great). The job of IT is, in part, to make sure you have a working system and that disruption is minimised. If the vendor tells them that their software won't work then it's time to discuss options. Anything you can do to massage the relationship with the IT people toward them realising they are upgrading a microscope rather than an office PC and the realistic costs of software induced hardware failure etc, the better things will go long term. Then you can get them to suggest solutions.

2. We solved the problem of "connection to the network" and virus transfer via USB a mixture of policy and tech solutions.
For example. We have a TEM which runs Windows 2K on its control PC. The PC is connected via LAN to another PC running Windows 7 in a different room (this PC also connects the same way to some other microscopes). The PC also connects, via a separate LAN card, to the organisation LAN and the internet etc. It is fully patched and with security. To get files from the microscope users access the shared data drive on the microscope PC from the win 7 pc (which they can do while someone else is using the microscope). You then have a policy of no USB drive etc for the microscope PC which is considered to be "not on the network".

Hope there is something relevant in that.
Best wishes,
Duane

AgResearch Limited | Lincoln Research Centre | New Zealand
Dr Duane P Harland, Senior Scientist
T +64 3 321 8710  E duane.harland-at-agresearch.co.nz


-----Original Message-----
X-from: jkrupp-at-deltacollege.edu [mailto:jkrupp-at-deltacollege.edu]
Sent: Tuesday, 28 April 2015 8:30 a.m.
To: Harland, Duane

Dear all:

I would like to revisit the problem of old software, computers, and institutional support.

We have many instruments that run on proprietary software that has not been upgraded to more modern operating systems.

For example, some of our instruments use programs only compatible with Windows XP.

Our IT guys want to 'upgrade' all campus computers to a newer operating system and don't want any old machines running.

Is it reasonable to tell them that we need our old XP (and earlier) computers to keep our instruments running.

What would be a good approach to satisfy their urge to stay current and our need to live in the past?

Thanks

Jon

Jonathan Krupp
Applied Science, Business & Technology
San Joaquin Delta College
5151 Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu

Find us on Facebook -at-
Electron Microscopy at SJ Delta College










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From: vitalylazar-at-att.net
Date: Mon, 27 Apr 2015 20:04:33 -0500
Subject: [Microscopy] Re: Computer updates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

A few simple steps may help.

Step 1: install Win.7/8 PC and disconnect XP/Win2K machine from
network. Arguing with IT policy does not work but taking problem off
their hands may.

Step 2: let old PC only run the equipment, do not use it for any other
purposes.

Step 3: The old PC should have nothing except necessary app. program and
hardware drivers. Transfer/remove all acquired data from it at the end
of each session, this way there is nothing to backup. Just keep couple
of spare installation disks with application and drivers.

Step 4: identify obsolete components i.e. motherboard with older bus
type and proprietary interface card(s), etc. Buy spares while available.
Or even the entire computer. Cheap for now but will become expensive or
NLA just like components for old PDP-based EDS computers in the 90-s.

Data transfer can be done in many ways. Private network or USB drives or
CDs or anything else. If XP machine becomes infected then system restore
will likely fix it but if not then re-install OS and the application -
easy with nothing to backup and no data loss. Besides a "lethal" malware
is a rarity. My PC-related tech. support problems almost always about
gigabytes of temp. files, junk applications plus disk cleanup and defrag
not done in years.


Vitaly Feingold
SIA
2773 Heath Lane
Duluth GA 30096
Ph. 770-232-7785
Fax 770-232-1791
www.sia-cam.com
vitaly-at-sia-cam.com

On 4/27/2015 4:17 PM, jkrupp-at-deltacollege.edu wrote:
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} Dear all:
}
} I would like to revisit the problem of old software, computers, and institutional support.
}
} We have many instruments that run on proprietary software that has not been upgraded to more modern operating systems.
}
} For example, some of our instruments use programs only compatible with Windows XP.
}
} Our IT guys want to 'upgrade' all campus computers to a newer operating system and don't want any old machines running.
}
} Is it reasonable to tell them that we need our old XP (and earlier) computers to keep our instruments running.
}
} What would be a good approach to satisfy their urge to stay current and our need to live in the past?
}
} Thanks
}
} Jon
}
} Jonathan Krupp
} Applied Science, Business & Technology
} San Joaquin Delta College
} 5151 Pacific Ave.
} Stockton, CA 95207
} 209-954-5284
} jkrupp-at-deltacollege.edu
}
} Find us on Facebook -at-
} Electron Microscopy at SJ Delta College
}
}
}
}
}
}
}
}
}
}
} ==============================Original Headers==============================
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From: Reinhard.Rachel-at-biologie.uni-regensburg.de
Date: Tue, 28 Apr 2015 06:17:42 -0500
Subject: [Microscopy] Computer updates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Jon,
basically, all is said in the various answers.
a) we - the admin's of the scopes - have to supervise not only the scopes and
the (many) users but also all the IT associated with it, and we need to know
quite well what's going on inside (if we have not done already); a good
collaboration with the IT gurus is necessary ... or even try to turn into an IT
guru ;-)
b) } Our IT guys want to 'upgrade' all campus computers to a newer operating

} system and don't want any old machines running.
--} this is understandable - but here, they already understood that this is
not possible. They have accepted that "we need our old XP (and earlier)
computers to keep our instruments running."
c) } What would be a good approach to satisfy their urge to stay current and
our
} need to live in the past?
here, all older machines (XP and older) are running in a local, secure network
inside the campus, and not accessible from outside and with no access to the
outside world.
One major problem: all these 'drives' (e.g. USB etc) which become connected to
the local machine for copying / storing images / data. One option is to stop
any access to USB ports - and backing up all scientific data on a central
storage area. Second problem: hardware issues on the old computers (solution:
store old PC's for hardware backup). And, make people aware about 'our'
problems.
kind regards - Reinhard

--
Prof. Dr. Reinhard Rachel
University of Regensburg
Centre for EM / Anatomy
Faculty of Biology & Preclin. Med.
Universitaetsstrasse 31
D-93053 Regensburg - Germany
tel +49 941 943 -2837, -1720
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29

Next microscopy conferences:
http://www.mc2015.de
DGE - Microscopy Conference 2015, Sept 6-11, GĂśttingen
http://www.emc2016.fr/en/
16th Europ Microsc Congress EMC 2016 in Lyon, FR
next Microbiol. conferences:
VAAM - Annual Conf March 13-16, 2016, Jena



==============================Original Headers==============================
5, 24 -- From Reinhard.Rachel-at-biologie.uni-regensburg.de Tue Apr 28 06:17:39 2015
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From: benada-at-biomed.cas.cz
Date: Tue, 28 Apr 2015 08:17:39 -0500
Subject: [Microscopy] Fw: Computer updates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Reinhard,
We are facing the same problem with old computers and not supported
operating systems. We use the same solution, a separate local network
(hosting 1x Win3.11WfW – an old EDAX DX4 :-) , 1x Win98, 2x WinXP and
2x Win7).
Here I would like to comment USB drives problem. After very bad
experiences about 10 years ago, no user is allowed to copy data onto
his/her own USB drive directly from microscope PC. For USB drive users
we use following set-up. We have installed one linux box in our local
network running Debian Wheezy and Samba server. Everyone who wants to
copy data onto USB flash disk has to do it thru this linux box and
Samba shared folders on the old Win systems.

With best regards
Oldrich

--
Oldrich Benada
Institute of Microbiology AS CR, v.v.i.
Videnska 1083
142 20 Prague 4
Czech Republic


On Tue, 28 Apr 2015 06:21:21 -0500,
Reinhard.Rachel-at-biologie.uni-regensburg.de wrote :
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver On-Line Help
} http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Jon,
} basically, all is said in the various answers.
} a) we - the admin's of the scopes - have to supervise not only the
} scopes and the (many) users but also all the IT associated with it,
} and we need to know quite well what's going on inside (if we have not
} done already); a good collaboration with the IT gurus is
} necessary ... or even try to turn into an IT guru ;-)
} b) } Our IT guys want to 'upgrade' all campus computers to a newer
} operating
}
} } system and don't want any old machines running.
} --} this is understandable - but here, they already understood that
} this is not possible. They have accepted that "we need our old XP
} (and earlier) computers to keep our instruments running."
} c) } What would be a good approach to satisfy their urge to stay
} current and our
} } need to live in the past?
} here, all older machines (XP and older) are running in a local,
} secure network inside the campus, and not accessible from outside and
} with no access to the outside world.
} One major problem: all these 'drives' (e.g. USB etc) which become
} connected to the local machine for copying / storing images / data.
} One option is to stop any access to USB ports - and backing up all
} scientific data on a central storage area. Second problem: hardware
} issues on the old computers (solution: store old PC's for hardware
} backup). And, make people aware about 'our' problems.
} kind regards - Reinhard
}
} --
} Prof. Dr. Reinhard Rachel
} University of Regensburg
} Centre for EM / Anatomy
} Faculty of Biology & Preclin. Med.
} Universitaetsstrasse 31
} D-93053 Regensburg - Germany
} tel +49 941 943 -2837, -1720
} mail reinhard.rachel-at-biologie.uni-regensburg.de
} office: VKL 3.1.29
}
} Next microscopy conferences:
} http://www.mc2015.de
} DGE - Microscopy Conference 2015, Sept 6-11, GÜttingen
} http://www.emc2016.fr/en/
} 16th Europ Microsc Congress EMC 2016 in Lyon, FR
} next Microbiol. conferences:
} VAAM - Annual Conf March 13-16, 2016, Jena
}
}
}
} ==============================Original
} Headers============================== 5, 24 -- From
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} 28 Apr 2015 13:17:32 +0200 5, 24 -- From: "Reinhard Rachel"
} {Reinhard.Rachel-at-biologie.uni-regensburg.de} 5, 24 -- To: "microscopy
} listserver" {Microscopy-at-microscopy.com} 5, 24 -- Subject: Computer
} updates 5, 24 -- References:
} {201504272055.t3RKt3u5015393-at-ns.microscopy.com} 5, 24 -- In-Reply-To:
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Upozorneni:
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Disclaimer:
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==============================Original Headers==============================
10, 41 -- From benada-at-biomed.cas.cz Tue Apr 28 08:17:38 2015
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From: xinran.liu-at-yale.edu
Date: Tue, 28 Apr 2015 08:53:35 -0500
Subject: [Microscopy] Yale Microscopy Workshop Announcement

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

2015 Yale Microscopy Workshop

Time: June 2 - 4th, 2015
Location: Yale Medical School, The Anlyan Center (TAC), New Haven, CT
Cost: Free registration (on-line or on-site)
Information: http://microscopy.med.yale.edu
{http://microscopy.med.yale.edu/index.aspx}

Features:
- Symposia on Lightsheet Microscopy ,electron tomography and Cryo-EM
- Open access to state-of-the-art light and electron microscopes, as well
as various sample preparation equipment (conventional and cryoEM)
- Demonstrations, technical lectures, and walk-in clinics
- Multiple vendor participation


There are two themes for the upcoming Symposium: "Lightsheet Microscopy"
and "Visualizing sub-cellular structure in 3D by electron tomography and
cryo-EM".
We invite you to participate in a three day workshop. This free annual
event is a combination of symposium and open access to a wide variety of
fully functional microscopes. This year's symposium is focused on
Lightsheet microscopy and Cryo-EM. We are very pleased to announce that
several recent product releases will be available for hands-on use,
including Lightsheet microscopes from Leica and LaVision BioTec and a
Leica Cryo-EM system.

This event is designed for the busy researcher who wants to explore new
techniques, see the latest in instrumentation, or simply get needed advice
from vendor representatives. Reservations can be made for many of the
instruments after registration. View this as an opportunity to perform a
"surgical strike" exploration without any financial or time commitments.
Feel free to come for advice from vendor representatives or to try out a
microscope even if you are not attending a class or a seminar.

The confirmed speakers and schedule for electron tomography and cryo-EM
are the following:

Tuesday, June 2nd, 9:00­5:00 PM

"Cryo-EM for molecular and cellular biology research"
Wah Chiu, PhD
National Center for Macromolecular Imaging, Baylor College of Medicine,
Houston TX

"Sharpening our view of molecular machines that attach to filaments˛
Chuck Sindelar, PhD,
Dept of Molecular Biophysics and Biochemistry Yale University

"Cryo-EM studies of microtubule-MAP interactions in vitro and in situ"
Andreas Hoenger, PhD
Dept of Molecular, Cellular and Developmental Biology, University of
Colorado at Bolder

The workshop is open to the international research community and only
requires free registration. Please see the website for free registration,
a schedule of events, and list of equipment.
http://microscopy.med.yale.edu {http://microscopy.med.yale.edu}

Please feel free to disseminate information about this workshop by
word-of-mouth or through email at your institution. Need to try out an
instrument that is not on the list but manufactured by a vendor that is
already participating? Write to an organizer and we'll see if they can
bring it.

We look forward to seeing you there - please reserve early.

The organizers,
Ann Haberman ann.haberman-at-yale.edu {mailto:ann.haberman-at-yale.edu}
Derek Toomre
derek.toomre-at-yale.edu {mailto:derek.toomre-at-yale.edu}
Joerg Bewersdorf
joerg.bewersdorf-at-yale.edu {mailto:joerg.bewersdorf-at-yale.edu}
Xinran Liu
xinran.liu-at-yale.edu {mailto:xinran.liu-at-yale.edu}









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From: microscopy.listserver-at-gmail.com
Date: Tue, 28 Apr 2015 15:58:09 -0500
Subject: [Microscopy] viaWWW:Critical point drying of hydrogel as sample prep for SEM

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Email: dwitters-at-caltech.edu
Name: Daan Witters

Organization: Caltech

Title-Subject: [Filtered] Critical point drying of hydrogel as sample
prep for SEM

Message: Hi,
I have a thin membrane that contains a hydrogel that has pores estimated
to be 100-200 nm. I would like to visualize the pore structure on SEM
and I heard that critical point drying is a suitable method for
preparing my sample.

I wondered if my sample prep can be as easy as exchanging the water in
my hydrogel with ethanol, placing the sample directly with ethanol in
the critical point dryer, and dry the sample. If I want a
cross-sectional view of the membrane, is it sufficient to cut the
membrane while it is soaked in ethanol? Or are there other precautions I
should take into account? Also, is there any recommendation for how much
gold I can sputter on the dried sample? 50 nm of gold would already
influence my pore size significantly and I don't know if gold gets
deposited uniformly everywhere in the gel.

Thanks so much,
Best,
Daan Witters

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From: wesaia-at-iastate.edu
Date: Tue, 28 Apr 2015 17:33:50 -0500
Subject: [Microscopy] viaWWW:Critical point drying of hydrogel as sample prep for SEM

Contents Retrieved from Microscopy Listserver Archives
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Others can probably comment better than I can about the entire plan, but there are a couple items I would address immediately.

First, I would be careful about cutting the membrane to reveal a cross section. I have clients cut samples to see the structure of a 300-nm layer on the surface. Even when using a fresh razor blade, they are surprised at the amount of damage left behind. It is ugly at 15kx. Your situation could be the same. However, if you are not looking at the surface but at a rather thick core areas, simple cutting might work for you.

We used to apply 15 nm of gold with our old coater. That is terribly thick by today's standards. We not often coat with as little as 2 nm of iridium. I would worry of you would still have charging due to the porous nature of your material. You probably want small volumes with something nearby to conduct away the charge. You might also want to look into variable pressure SEM to help mitigate charging.

Warren Straszheim

P.S. Now let me see how many vendors and labs that I have no interest in barrage me with out-of-office messages.
Somehow sending out-of-office messages to someone you have no regular dealings with seems the antithesis of good customer service or public relations.

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Email: dwitters-at-caltech.edu
Name: Daan Witters

Organization: Caltech

Title-Subject: [Filtered] Critical point drying of hydrogel as sample prep for SEM

Message: Hi,
I have a thin membrane that contains a hydrogel that has pores estimated to be 100-200 nm. I would like to visualize the pore structure on SEM and I heard that critical point drying is a suitable method for preparing my sample.

I wondered if my sample prep can be as easy as exchanging the water in my hydrogel with ethanol, placing the sample directly with ethanol in the critical point dryer, and dry the sample. If I want a cross-sectional view of the membrane, is it sufficient to cut the membrane while it is soaked in ethanol? Or are there other precautions I should take into account? Also, is there any recommendation for how much gold I can sputter on the dried sample? 50 nm of gold would already influence my pore size significantly and I don't know if gold gets deposited uniformly everywhere in the gel.

Thanks so much,
Best,
Daan Witters

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16, 45 -- Subject: RE: [Microscopy] viaWWW:Critical point drying of hydrogel as sample
16, 45 -- prep for SEM
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16, 45 -- prep for SEM
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From: Reinhard.Rachel-at-biologie.uni-regensburg.de
Date: Tue, 28 Apr 2015 17:49:26 -0500
Subject: [Microscopy] CPD of hydrogel - for SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Daan,
} I have a thin membrane that contains a hydrogel that has pores estimated
} to be 100‑200 nm. I would like to visualize the pore structure on SEM
} and I heard that critical point drying is a suitable method for
} preparing my sample.
in principle, one might argue: "Yes, this may work"

} I wondered if my sample prep can be as easy as exchanging the water in
} my hydrogel with ethanol,
but, do you have any reason to believe that the pore size is the same (a) in
water / aqueous environment, and (b) in the hydrogel in ethanol?

} placing the sample directly with ethanol in
} the critical point dryer, and dry the sample.
you might be able to do this, technically. But I assume that again, the pore
size will be altered, by removing the ethanol, during CPD. (if you do not worry
about this alteration: go ahead; you also may try air-drying - you might have
done this already?)

} If I want a
} cross‑sectional view of the membrane, is it sufficient to cut the
} membrane while it is soaked in ethanol?
again, this is artificial .... you can do this, but how do you know what kind
of alterations are introduced?

} Or are there other precautions I
} should take into account? Also, is there any recommendation for how much
} gold I can sputter on the dried sample? 50 nm of gold would already
} influence my pore size significantly and I don't know if gold gets
} deposited uniformly everywhere in the gel.
if at all: platinum (or iridium) is the way to go, and as little as possible
(something in the range of few nm; 2 to 3 nm is sufficient, for imaging in a
modern SEM, at low kV, 1-2keV).

in fact, you might have to resort to cryo-SEM of uncoated, properly frozen
samples, if you really want to get the real answer. Tricky, though, for the
unexperienced ... (like me).
You need to have the right cryo-SEM, and experience ...
kind regards - Reinhard

--
Prof. Dr. Reinhard Rachel
University of Regensburg
Centre for EM / Anatomy
Faculty of Biology & Preclin. Med.
Universitaetsstrasse 31
D-93053 Regensburg - Germany
tel +49 941 943 -2837, -1720
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29

Next microscopy conferences:
http://www.mc2015.de
DGE - Microscopy Conference 2015, Sept 6-11, GĂśttingen
http://www.emc2016.fr/en/
16th Europ Microsc Congress EMC 2016 in Lyon, FR
next Microbiol. conferences:
VAAM - Annual Conf March 13-16, 2016, Jena



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From: Rosemary.White-at-csiro.au
Date: Tue, 28 Apr 2015 19:10:17 -0500
Subject: [Microscopy] CPD of hydrogel - for SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

CryoSEM is a good idea. With 200-300 nm pore size, you should be able to freeze the hydrogel onto a stub with little or no ice crystal formation within the membrane itself, then place on cryostage in the SEM and carefully etch away the ice. We've done this quite a bit with plant material, and plant cell walls are essentially hydrogels though with much smaller pores. You'd need to be able to do well-controlled coating in the cryotransfer unit, which the modern instruments should be capable of. Soaking the hydrogel in something conductive before freezing would help too and may allow you to image the membrane uncoated.

best regards,
Rosemary

Dr Rosemary White
CSIRO Black Mountain
GPO Box 1600
Canberra, ACT 2601
Australia
T 61 2 6246 5475

________________________________________
X-from: Reinhard.Rachel-at-biologie.uni-regensburg.de [Reinhard.Rachel-at-biologie.uni-regensburg.de]
Sent: Wednesday, 29 April 2015 8:54 a.m.
To: White, Rosemary (Agriculture, Black Mountain)

Hi Daan,
} I have a thin membrane that contains a hydrogel that has pores estimated
} to be 100‑200 nm. I would like to visualize the pore structure on SEM
} and I heard that critical point drying is a suitable method for
} preparing my sample.
in principle, one might argue: "Yes, this may work"

} I wondered if my sample prep can be as easy as exchanging the water in
} my hydrogel with ethanol,
but, do you have any reason to believe that the pore size is the same (a) in
water / aqueous environment, and (b) in the hydrogel in ethanol?

} placing the sample directly with ethanol in
} the critical point dryer, and dry the sample.
you might be able to do this, technically. But I assume that again, the pore
size will be altered, by removing the ethanol, during CPD. (if you do not worry
about this alteration: go ahead; you also may try air-drying - you might have
done this already?)

} If I want a
} cross‑sectional view of the membrane, is it sufficient to cut the
} membrane while it is soaked in ethanol?
again, this is artificial .... you can do this, but how do you know what kind
of alterations are introduced?

} Or are there other precautions I
} should take into account? Also, is there any recommendation for how much
} gold I can sputter on the dried sample? 50 nm of gold would already
} influence my pore size significantly and I don't know if gold gets
} deposited uniformly everywhere in the gel.
if at all: platinum (or iridium) is the way to go, and as little as possible
(something in the range of few nm; 2 to 3 nm is sufficient, for imaging in a
modern SEM, at low kV, 1-2keV).

in fact, you might have to resort to cryo-SEM of uncoated, properly frozen
samples, if you really want to get the real answer. Tricky, though, for the
unexperienced ... (like me).
You need to have the right cryo-SEM, and experience ...
kind regards - Reinhard

--
Prof. Dr. Reinhard Rachel
University of Regensburg
Centre for EM / Anatomy
Faculty of Biology & Preclin. Med.
Universitaetsstrasse 31
D-93053 Regensburg - Germany
tel +49 941 943 -2837, -1720
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29

Next microscopy conferences:
http://www.mc2015.de
DGE - Microscopy Conference 2015, Sept 6-11, GĂśttingen
http://www.emc2016.fr/en/
16th Europ Microsc Congress EMC 2016 in Lyon, FR
next Microbiol. conferences:
VAAM - Annual Conf March 13-16, 2016, Jena



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From: microscopy.listserver-at-gmail.com
Date: Tue, 28 Apr 2015 23:55:58 -0500
Subject: [Microscopy] viaWWW:TFE tips in Zeiss FESEMs

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Name: Dr. Gary Gaugler

Organization: Microtechnics

Title-Subject: [Filtered] TFE tips in Zeiss FESEMs

Message: Does anyone have any experiences, good or bad, with YPS versus
Denka TFE 174 tips in Zeiss Gemini Supra SEMs? The cost difference is
not huge but lifetime is a question as is performance. What about
turning the gun off when not needed and back on for work?

Any input is greatly appreciated. TIA.

gary g.


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From: microscopy.listserver-at-gmail.com
Date: Wed, 29 Apr 2015 00:14:06 -0500
Subject: [Microscopy] viaWWW:Osmium problem

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Email: buchsmith-at-gmail.com
Name: JoAnn Buchanan

Organization: Allen Institute for Brain Science

Title-Subject: [Filtered] Osmium problem

Message: I just had a big problem with the osmium fixative I used (2% in
0.1 M cacodylate buffer) turning a purplish black after 3 hours of
fixation.

The tissue was slimy and basically ruined. Any ideas of what could have
gone wrong? The osmium was perfectly clear and slightly yellow as always
when I made the solution.

I also used the same type vials and buffer I have used before.
What kind of solutions could cause this reaction?

Thank you

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From: nizets2-at-yahoo.com
Date: Wed, 29 Apr 2015 04:19:03 -0500
Subject: [Microscopy] Re: viaWWW:Critical point drying of hydrogel as sample prep for SEM

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Hi!

The question really is: do you need an analysis of the structure of the pore or do you just need to determine their size accurately?
If you "only" need the size, I would recommend other techniques than EM, because hydration is probably critical as it was already mentioned.
Perhaps you could consider for example atomic force microscopy (AFM), which can be performed in liquid?
Just my 2 cents.

Regards
Stephane

--------------------------------------------
On Tue, 4/28/15, microscopy.listserver-at-gmail.com {microscopy.listserver-at-gmail.com} wrote:

Subject: [Microscopy] viaWWW:Critical point drying of hydrogel as sample prep for SEM
To: nizets2-at-yahoo.com
Date: Tuesday, April 28, 2015, 11:05 PM




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Email: dwitters-at-caltech.edu
Name: Daan Witters

Organization: Caltech

Title-Subject: [Filtered] Critical point drying of hydrogel
as sample
prep for SEM

Message: Hi,
I have a thin membrane that contains a hydrogel that has
pores estimated
to be 100-200 nm. I would like to visualize the pore
structure on SEM
and I heard that critical point drying is a suitable method
for
preparing my sample.

I wondered if my sample prep can be as easy as exchanging
the water in
my hydrogel with ethanol, placing the sample directly with
ethanol in
the critical point dryer, and dry the sample. If I want a
cross-sectional view of the membrane, is it sufficient to
cut the
membrane while it is soaked in ethanol? Or are there other
precautions I
should take into account? Also, is there any recommendation
for how much
gold I can sputter on the dried sample? 50 nm of gold would
already
influence my pore size significantly and I don't know if
gold gets
deposited uniformly everywhere in the gel.

Thanks so much,
Best,
Daan Witters

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From: nizets2-at-yahoo.com
Date: Wed, 29 Apr 2015 04:43:24 -0500
Subject: [Microscopy] Re: Computer updates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Jon!

Short and efficient: OOMDB (only over my dead body).
Hope to hear from you soon! :-D

More seriously, I agree with others saying that you need to explain that these PCs are part of the instrument. You can't change them without changing the instrument.

Regards,
Stephane

--------------------------------------------
On Mon, 4/27/15, jkrupp-at-deltacollege.edu {jkrupp-at-deltacollege.edu} wrote:

Subject: [Microscopy] Computer updates
To: nizets2-at-yahoo.com
Date: Monday, April 27, 2015, 10:21 PM




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Dear all:

I would like to revisit the problem of old software,
computers, and institutional support.

We have many instruments that run on proprietary software
that has not been upgraded to more modern operating
systems.

For example, some of our instruments use programs only
compatible with Windows XP.

Our IT guys want to 'upgrade' all campus computers to a
newer operating system and don't want any old machines
running.

Is it reasonable to tell them that we need our old XP (and
earlier) computers to keep our instruments running.

What would be a good approach to satisfy their urge to stay
current and our need to live in the past?

Thanks

Jon

Jonathan Krupp
Applied Science, Business & Technology
San Joaquin Delta College
5151 Pacific Ave.
Stockton, CA  95207
209-954-5284
jkrupp-at-deltacollege.edu

Find us on Facebook -at-
Electron Microscopy at SJ Delta College










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From: connellyps-at-nhlbi.nih.gov
Date: Wed, 29 Apr 2015 09:41:19 -0500
Subject: [Microscopy] Re: viaWWW:Osmium problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

JoAnn,

The most common causes of Osmium turning color are because there is still
glutaraldehyde in the sample or at the top of the tube which mixes with
the osmium and oxidation occurs.

I buffer wash 3 times 20 minutes and make sure that I rinse the whole vial
and inside of the cap then I wipe the top of the vial to dry it. The
extended wash time is used to stop "peppering" of mitochondria and other
dense structures. The osmium fixative is in cacodylate buffer, as you use,
but at 1%. Several microscopists that I know do use 2% osmium. I have
never gone much over an hour and do not understand the need for 3 hours as
you mention. I had learned that osmium penetrates into a sample about
0.5mm in an hour then it starts to block itself from going deeper into a
tissue sample. That is why we keep the size of all samples to 1mm cubic
or smaller. If a larger sample is cut in two after an hour one can see
that it is white in the center and hence the osmium did not reach that
point to do its work as a fixative.

I had a sample back in 2007 or 2008, that had a huge amount of fat in it.
I saw that the osmium did start to turn within the hour. I assume that
the glutaraldehyde was not washed out completely, for back then I buffer
washed only a half hour.

Opinions and experiences related are those of Pat Connelly and do not
represent the NIH.
This message is not confidential and can be freely shared and reproduced.

Pat

Patricia Stranen Connelly
Research Assistant
NHLBI EM Core Facility
National Institutes of Health
Building 14E Room 111B
Bethesda, MD 20892-5570
301-496-3491
connellyps-at-mail.nih.gov

http://www.nhlbi.nih.gov/research/intramural/researchers/core/electron-micr
oscopy-core/index.html



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From: henning.stahlberg-at-unibas.ch
Date: Wed, 29 Apr 2015 11:08:11 -0500
Subject: [Microscopy] PostDoc in Cryo-Electron Tomography of T6SS in the Basler lab at

Contents Retrieved from Microscopy Listserver Archives
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We are inviting applications for a Postdoctoral Researcher in the laboratory of Prof. Marek Basler at the Biozentrum of University of Basel (full time position).

========================================================
Structure of the bacterial Type VI secretion system by cryo-EM
========================================================


The Type VI secretion system (T6SS) is a unique protein-translocating bacterial nanomachine that is fascinating from several points of view: (i) T6SS clusters are present in numerous pathogenic bacteria, (ii) T6SS can deliver effectors into both bacterial and eukaryotic targets, (iii) components of T6SS are evolutionarily related to contractile phage tails, (iv) dynamics of T6SS can be studied using fluorescence microscopy in live cells allowing unprecedented insights into function of this complex nanomachine.

More info: http://www.biozentrum.unibas.ch/basler/
Basler, M., et al., Nature 2012, 483, 182–186.
Kudryashev, M., et al., Cell 2015, 160, 952–962.

In this project, we aim to obtain the high-resolution structure of the whole T6SS assembly in various model organisms using cryo-electron microscopy. The goal is to obtain mechanistic insight into T6SS function and explain differences in T6SS dynamics between model organisms. We will primarily focus on the following biological questions: How is T6SS tail attached to the cell wall? What are differences between pre- and post- contraction structures of T6SS? What are the fundamental structural differences between model organisms?

We collaborate with Prof. Henning Stahlberg and have access to C-CINA (http://www.c-cina.unibas.ch/) equipped with a FEI Titan Krios with Quantum-LS GIF / K2-Summit and a FEI Polara with K2-Summit. Extensive computing infrastructure is available. Starting date by arrangement (approx. second half of 2015). Long term funding is secured from an SNSF grant. Salary according to SNSF guidelines.

Qualifications:

Candidates holding a PhD diploma with experience in cryo-electron microscopy and/or cryo-electron tomography of bacteria and image processing of such data are encouraged to apply. The working language is English.

How to apply:

Please, send your CV (max 3 pages), a brief description of previous research experience
(1 page), a motivation letter describing your interests in our lab (1 page), and the names of two references to Dr. Anne-CĂŠcile Hiebel: basler-recruitment-at-unibas.ch. Deadline: Jul-31-2015.


The Biozentrum of the University of Basel is one of the leading institutes worldwide for molecular and biomedical basic research and teaching. It is home to more than 30 research groups with scientists from over 40 countries. Research at the Biozentrum focuses on the areas of Cell Growth & Development, Infection Biology, Neurobiology, Structural Biology & Biophysics and Computational & Systems Biology. With its more than 550 employees, the Biozentrum is the largest department at the University of Basel’s Faculty of Science.

Marek Basler, Biozentrum, University Basel



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From: DusevichV-at-umkc.edu
Date: Tue, 5 May 2015 09:10:06 -0500
Subject: [Microscopy] Cryo-SEM in Kansas City area

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We have a user who wants to do mapping with non-square pixels. That is, the step size in X would be different than the step size in Y. I cannot see any way to do this in DM. Does anyone have any suggestions?

Thanks.

John Mardinly, ASU


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From no-reply-at-financeservicesltd.com Sun May 3 18:10:58 2015
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Hi Listers,

I have a user who needs a cryo-SEM (and we do not have one). Could you please direct me to closest to Kansas City area facility where he can have work done (for a fee).

Thanks,

Vladimir



Vladimir M. Dusevich, Ph.D.

Electron Microscope Lab Director

(816) 235-2072

371 School of Dentistry

650 E. 25th Street

Kansas City, MO 64108-2784


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 5 May 2015 18:41:08 -0500
Subject: [Microscopy] viaWWW:Staff Position, Electron Microscopy Specialist

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Email: marie.cantino-at-uconn.edu
Name: Marie Cantino

Organization: University of Connecticut

Title-Subject: [Filtered] Staff Position, Electron Microscopy Specialist

Message: The Department of Physiology and Neurobiology at the University of Connecticut seeks
applications for an Electron Microscopy Specialist (Academic Assistant 1 or 2). This is a
full-time, annually renewable position. The successful candidate will work in the Bioscience
Electron Microscopy Laboratory (BEML) located on the main campus in Storrs. The successful candidate
will be in charge of transmission electron microscopy (TEM) services, assisting scientists in
experimental design and interpretation of results, preparation of biological and organic samples and
TEM operation, as well as training and supervision of students in these procedures. Other duties may
include assisting other laboratory staff in carrying out projects and training associated with
scanning electron microscopy, and routine laboratory maintenance. Go to www.jobs.uconn.edu, Staff
Openings, Job ID# 2015312, for more information.

Screening of applications will begin immediately and will continue until the position is filled.

The University of Connecticut is an EEO/AA employer.




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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 5 May 2015 18:41:59 -0500
Subject: [Microscopy] viaWWW:2015 "Lunch with a Manager" @ MM Annual Meeting in Portland

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Email: tomw-at-uidaho.edu
Name: Tom Williams

Organization: Univ. of Idaho

Title-Subject: [Filtered] 2015 "Lunch with a Manager" -at- MM Annual Meeting in Portland

Message: Greetings,

The Facilities Operations & Management FIG is pleased to once again offer our Lunch w/Manager
round-table. We are also pleased to have financial support from JEOL Ltd. If you would be so kind
as to distribute the information below to your students, post-docs, colleagues, or anyone you
believe might be interested.

I would be most appreciative!
See you in Portland.
Tom Williams

An Invitation to the Membership:

2015 Microscopy & Microanalysis Annual Meeting Portland, OR
“Lunch with a Manager”
Hosted by Facilities Operations &
Management Focused Interest Group &
Sponsored by JEOL Ltd.

The MSA FOM-FIG is pleased to host a Lunch &
Roundtable forum with a panel of veteran
Facility Managers.

Discussion Topics:
--“I’m from Venus, the Dean is from Mars!”:
Communication with Administration
--Open Questions round-table

The Particulars:
Monday [3 Aug.]
Time: 12:15-1:30
Location: Oregon Conv. Center [rm. TBA]
Food & Drinks Provided*
*box lunch [vegetarian option]

The lunches are limited to the first 20 registered participants! Walk-ins are welcome depending on
available seating.

Deadline to register: 28 July

To Register:
Contact Tom Williams at the
University of Idaho: tomw-at-uidaho.edu
-provide a contact email, institutional affiliation,
and any dietary accommodations or restrictions.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 6 May 2015 07:08:12 -0500
Subject: [Microscopy] viaWWW:Postdoc position in Developing Electron Microscopy of Electrochemical

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X-from: kristian.molhave-at-nanotech.dtu.dk

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Name: Kristian Mølhave

Organization: DTU Nanotech

Title-Subject: [Filtered] Postdoc position in Developing Electron Microscopy of Electrochemical
Processes in Liquids

Message: Postdoc position in Developing Electron Microscopy of Electrochemical Processes in Liquids

Application deadline 17th may 2015

Description and online application form:
http://www.nanotech.dtu.dk/english/About-NTCH/Jobs/job?id=60b546be-0212-48a3-8c40-c26f26d20f8a

DTU Nanotech at the Technical University of Denmark invites applications for a position as postdoc
in Developing Electron Microscopy of Electrochemical Processes in Liquids.

Electron microscopic imaging of physical and chemical processes in liquids with atomic scale
resolution has become possible in the last couple of years by using special microchip based systems
that can contain the liquid sample behind ultra-thin electron transparent membranes. The aim of this
project is to develop new nanoscale imaging systems based on microfluidic chips, including
electrically contacted electrodes in the chip systems, to enable electron microscopy of
electrochemical processes in liquids.

In this project you will be developing such microfabricated devices that will make it possible to
observe a range of electrochemical processes in new ways using both scanning electron microscopy
(SEM) and transmission electron microscopy (TEM).

The project will involve development and microfabrication of chip systems in our 1300 m2 state of
art clean room facility Danchip; imaging in our electron microscopy facility CEN, using SEM and TEM
to observe and characterize fundamental electrochemical processes. The work will be in close
collaboration with microscopists, electrochemists and industrial partners in the project.

Responsibilities and tasks
The Post Doc project will involve:
• Electron microscopy at DTU advanced microscopy facility CEN
• The development of microchip systems in our cleanroom
• Performing experiments and detailed analysis of the chemical and physical processes in
collaboration with the project partners.
• Participate in supervision of students and close collaboration with PhD students in the group.

Qualifications
Candidates should have a PhD degree in engineering or a similar degree with an academic level
equivalent to the PhD degree in engineering. A background in chemistry and/or physics and experience
with one or more of the involved methods will be beneficial, such as:
• TEM methods such as STEM, EELS, EDX and holography
• Electrochemical measurements
• Cleanroom fabrication

Assessment
The assessment of the applicants will be made by Kristian Mølhave, Head of the Molecular Windows
group at DTU Nanotech, Jakob Wagner Professor at the Center for Electron Nanoscopy and Ole Hansen,
Professor at DTU Nanotech.

We offer
We offer an interesting and challenging job in an international environment focusing on education,
research, public-sector consultancy and innovation, which contribute to enhancing the economy and
improving social welfare. We strive for academic excellence, collegial respect and freedom tempered
by responsibility. The Technical University of Denmark (DTU) is a leading technical university in
northern Europe and benchmarks with the best universities in the world.

Salary and terms of employment
The appointment will be based on the collective agreement with the Confederation of Professional
Associations. The allowance will be agreed with the relevant union. The employment until 28 February
2018, starting as soon as possible.

Further information
Further information may be obtained from Kristian Mølhave, Head of the Molecular Windows group at
DTU Nanotech on Kristian.molhave-at-nanotech.dtu.dk or tel.: +45 2512 6672.

The project is financed by the FTP Sapere Aude project LiquidEM.

You can read more about the Molecular Windows group on www.nanotech.dtu.dk/mowin.

Application procedure:
Please submit your online application no later than 17th May 2015. Applications must be submitted as
one PDF file containing all materials to be given consideration. To apply, please open the link
"Apply online," fill in the online application form, and attach all your materials in English in one
PDF file. The file must include:
• Application (cover letter)
• CV
• Diploma (an official translation into English)
• List of publications
Applications and enclosures received after the deadline will not be considered.

All interested candidates irrespective of age, gender, disability, race, religion or ethnic
background are encouraged to apply.

DTU Nanotech - the Department of Micro- and Nanotechnology is a centre of excellence in micro- and
nanotechnology exploiting sciences across the traditional boundaries of technology, thereby enabling
innovative solutions for the benefit of society. DTU Nanotech has approx. 220 people on its staff
with 40 % international employees creating a highly international working environment.

The Center for Electron Nanoscopy (CEN) has a suite of seven complementary electron microscopes,
comprising two scanning electron microscopes (SEMs), two dual beam (SEM combined with a focused ion
beam, FIB), an FEI Tecnai transmission electron microscope (TEM) and two “high end” FEI Titan TEMs.

DTU Danchip is the national Danish center for micro- and nanofabrication, providing state-of-the-art
processing equipment within the 1300 m2 cleanroom facilities.

DTU is a technical university providing internationally leading research, education, innovation and
public service. Our staff of 5,700 advance science and technology to create innovative solutions
that meet the demands of society; and our 10,000 students are being educated to address the
technological challenges of the future. DTU is an independent academic university collaborating
globally with business, industry, government, and public agencies.

Group homepage
http://www.nanotech.dtu.dk/mowin



With best regards
Kristian
___________________________
Kristian Mølhave
Associate Professor / Lektor, Ph.D.
Molecular Windows group leader
www.nanotech.dtu.dk/mowin
DTU Nanotech - Dept. of Micro and Nanotechnology 345e-252 Technical University of Denmark
Mobile Phone (0045) 2512 6672
E-mail: kristian.molhave-at-nanotech.dtu.dk
http://kristian.molhave.dk


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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 6 May 2015 08:37:16 -0500
Subject: [Microscopy] viaWWW: Struers Rotopol-31 grinding polishing machine

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Email: Linda.Davis-at-Vesuvius.com
Name: Linda Davis

Organization: Vesuvius USA

Title-Subject: [Filtered] Struers Rotopol-31 grinding polishing machine

Message: Hello All,
We are getting rid of an old Struers Rotopol-31 grinding polishing machine with Rotoforce 4 and
Multidoser (with Rotocom). We had a custom-machined head made for the Rotoforce, which holds 4
thin-section samples. We have numerous discs and cloths and supplies to go with this. If you want
this, it’s yours for either pickup or the shipping costs. Please contact me at
Linda.Davis-at-Vesuvius.com if you are interested.

Linda Davis

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From: ech-at-uvic.ca
Date: Wed, 6 May 2015 13:35:44 -0500
Subject: [Microscopy] ProjectMICRO The Private Eye workshop at M&M

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Hi All
This year at M&M in Portland the ProjectMICRO workshop Tuesday afternoon,
will be hosted by The Private Eye . There's a great portrait of The
Private Eye in the current issue of Microscopy Today. Click the link, type
in page 52 at the top of the page. Or scroll to page 52.

http://content.yudu.com/web/14lmv/0A3cxwn/MicroscopyTodayV23N3/flash/resour
ces/index.htm?referrerUrl=http%3A%2F%2Fcontent.yudu.com%2Fweb%2F14lmv%2F0A3
cxwn%2FMicroscopyTodayV23N3%2Findex.html

Perhaps you could pass along to like-minded administrators, or educators
who might be attending the M&M Conference?

Best wishes
Elaine Humphrey


Dr. Elaine C. Humphrey
Advanced Microscopy Facility
University of Victoria, Canada
Lab: 250-853-3968
cell: 250-886-2068
website: http://www.stehm.uvic.ca





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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 6 May 2015 16:49:39 -0500
Subject: [Microscopy] viaWWW:Proximity of Sputter Coater to SEM

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Email: lstafford-at-sono-tek.com
Name: Lisa

Organization: Sono-Tek

Title-Subject: [Filtered] Proximity of Sputter Coater to SEM

Message: Dear Colleagues,

I'm in the process of reorganizing my lab and I currently have my sputter coater and JEOL JCM-6000
Benchtop SEM placed 115 cm apart. My concern is that if the column is open to the atmosphere and the
sputter coater is run that the column may get contaminated.

Is this a legitimate concern?

Thank you for your time,

Lisa

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From: protrain-at-emcourses.com
Date: Thu, 7 May 2015 03:42:34 -0500
Subject: [Microscopy] RE: viaWWW:Proximity of Sputter Coater to SEM

Contents Retrieved from Microscopy Listserver Archives
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Hi Lisa

With all due respect I think you have your priorities wrong!

A sputter coater, like any other piece of equipment using a rotary pump, can
be a contamination device due to the pump fluid vapour which is brought out
of the pump with the gas. This contamination will pollute the laboratory
air, fall on surfaces and on people. But even these problems should not
worry you as much as your staff breathing this contaminated air!

Please make sure you use the best possible filter on the pump, and change it
regularly; to wait until you smell the contamination, in my mind, too late!
Alternatively, vent the pump to the outside world. Have in mind that the way
to clean out some of the contamination within any rotary pump fluid, is to
run a high level of air/gas through it. As the sputter coater rotary pump
starts to operate it ejects a high level of gas which will contain pump
fluid. Even under its actual operating conditions you are purging gas into
the system that is also passing through the pump fluid. Add to this that the
sputter coater is usually the first instrument to put the specimens under
vacuum, thus it has all the vapours from the specimen to cope with. This
combination of vapours, and chemical reactions within the pump fluid, result
in the smell you sense if the filter fitted to the pump is unable to cope.

I do hope that this helps you and the many others who should be aware of
rotary pump vapours?

Regards

Steve

Steve Chapman FRMS
Electron Microscopy Consultancy and Training
www.emcourses.com
Cell +44 (0)7711606967


---------------------------------------------------------------------------

Email: lstafford-at-sono-tek.com
Name: Lisa

Organization: Sono-Tek

Title-Subject: [Filtered] Proximity of Sputter Coater to SEM

Message: Dear Colleagues,

I'm in the process of reorganizing my lab and I currently have my sputter
coater and JEOL JCM-6000 Benchtop SEM placed 115 cm apart. My concern is
that if the column is open to the atmosphere and the sputter coater is run
that the column may get contaminated.

Is this a legitimate concern?

Thank you for your time,

Lisa

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From: larry.ackerman-at-ucsf.edu
Date: Thu, 7 May 2015 14:18:52 -0500
Subject: [Microscopy] Who might want to work at UC San Francisco?

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This is not a notification regarding employment position application. My retirement is approaching and we are considering various options for continuing electron and light microscopy core resources at UCSF. Please respond to me if you have an interest in a 40—60% position managing and operating our transmission and scanning electron microscopy core located on the San Francisco Parnassus Avenue campus. The duties will include maintaining the instruments, training new users, developing new services, preparing samples including thin sectioning or teaching users how to prepare samples ranging from negative staining, immuno-labeling, cell cultures and tissues of many types including dental non-organic samples, operation of the microscopes for or with users, administrative duties including preparation of recharges and marketing. It is helpful to have experience with a multi-user facility, knowledge of SerialEM software, confocal, widefield fluorescence and other light microscopy instrumentation and techniques.

--
Larry Ackerman, Specialist
Electron Microscopy Lab
Manager, Diabetes & Endocrinology Research Center Microscopy Core
UCSF, Dept. of Anatomy, Rm S657
513 Parnassus Ave., Box 0452
San Francisco, CA 94143

larry.ackerman-at-ucsf.edu

415-999-4758




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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 7 May 2015 19:58:10 -0500
Subject: [Microscopy] viaWWW:Sr. Application Specialist, Bruker Berlin, Germany

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Email: andi.kaeppel-at-googlemail.com
Name: Andi Kaeppel

Organization: Product Manager

Title-Subject: [Filtered] Sr. Application Specialist, Bruker Berlin, Germany

Message: We are looking for an Sr. Applications Specialist to join our team in Berlin and support
our energy-dispersive (EDS) and wavelength-dispersive (WDS) X-ray spectrometry products.
The ideal candidate has a minimum of 3 years professional experience with EDS & WDS technologies on
electron microscopes, is able to analyze complex samples of advanced materials and can produce
meaningful lab reports and applications notes with minimal supervision. He/she is well connected
with the scientific community, has an excellent understanding of related scientific trends,
challenges and limitations, and can represent our company at scientific events and commercial
tradeshows.

Go to
https://worldwidecareers-bruker.icims.com/jobs/search?ss=1&searchKeyword=2723
for more information.
Job ID: 2015-2723



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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 7 May 2015 19:59:22 -0500
Subject: [Microscopy] viaWWW:The 59th Annual MSNO May Conference

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Email: nxa157-at-case.edu
Name: Nanthawan Avishai

Organization: Microscopy society of NE Ohio (MSNO)

Title-Subject: [Filtered] The 59th Annual May Conference

Message: Microscopy society of NE Ohio (MSNO) with AVS,SAS and ACS is arranging the 59th Annual May
meeting which will be on May 20, at John Carroll University. It is a full day meeting, including 33
talks and 30 posters. Student pre-registration is free (including lunch). MSNO member
pre-registration is $25 and $35 for non-members (including technical sessions and luncheon).

You can see program and more detail at http://www.msneo.org/2015-may-meeting.html.

Wish to see you there.

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From: k.rola-at-int.pan.wroc.pl
Date: Fri, 8 May 2015 08:59:16 -0500
Subject: [Microscopy] SEM/EDS - problem with standardless quantitative analysis

Contents Retrieved from Microscopy Listserver Archives
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Dear all,

I work with FEI Nova NanoSEM 230 equipped with Apollo 40 detector by
EDAX. I have a problem concerning wrong results of EDS quantitative
analysis in a standardless mode. This happens for some of our samples,
such as CaF2, In2O3, CeO2, hydroxyapatite as well as for standards (from
SPI supplies), such as fluorapatite, indium phosphide, etc. I realize
that the standardless analysis method is not an accurate one, though the
differences between real and measured values seem to be too large (up to
about 10%). For example, fluorapatite contains 38,6 wt% of Ca, while the
measured value for Ca is 28,9 wt%.
I tried to find a solution for the problem. I made a calibration using
Cu and Al K lines. I checked HPD, but there was a good fit between
measured and theoretical spectra. I was changing various parameters,
such as working distance, spot size, acceleration voltage, time
constant, but differences between real and measured values were roughly
remaining the same. Next, I tried to use SEC parameters correction. For
example, based on the In2O3 and InP, I set SEC value for phosphor.
Nevertheless, this deteriorated the results of quantitative analysis for
a pentaphosphate. It seems that SEC correction is not a sufficient solution.
Finally, I tried measurement using our old and rarely used Philips SEM
515 microscope equipped with SUTW+ detector (also by EDAX) cooled with
liquid nitrogen. Surprisingly, results of quantitative analysis for
hydroxyapatite turned out to be almost correct. This suggests a problem
with the newer Apollo detector.
Does the detector work wrong? Is there any solution to this problem,
which can be found by a user?

Krzysztof Rola

Institute of Low Temperature and Structural Research
Polish Academy of Sciences
Wroclaw, Poland


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From: stefan.diller-at-t-online.de
Date: Fri, 8 May 2015 09:57:32 -0500
Subject: [Microscopy] Fixation procedure eye-iris-retina

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,
I need to work with fresh human or human-analog material concerning the structure of the eye.
Any procedure for fixation, OsO4 staining and going with ethanol to critical point drying would be appreciated.
Tissues to be processed are lens, iris and retina.

Thanks,
Stefan

--


-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.nanoflight.info
www.stefan-diller.com
www.electronmicroscopy.info
www.elektronenmikroskopie.info
www.zwillingsprojekt.de
www.assisi.de
-----------------------------------------------------

==============================Original Headers==============================
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From: apresto9-at-uthsc.edu
Date: Fri, 8 May 2015 14:09:11 -0500
Subject: [Microscopy] Technical Manager - Memphis TN

Contents Retrieved from Microscopy Listserver Archives
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Dear All,

We are looking to employ a Technical Manger for the Neuroscience Imaging
Center at the University of Tennessee Health Science Center, based in
Memphis TN.

This position will manage the Neuroscience Imaging Center at UTHSC, which
is comprised of five major facilities for on-campus and off-campus users
who desire training in light, confocal, and electron microscopic imaging.
Duties and responsibilities include training new users on Imaging Center
equipment; assisting users with experimental design; sample processing and
sectioning for TEM; overseeing scheduling of all major equipment; billing
and ordering of necessary supplies; determining workload for Imaging
Center histology technician.

Minimum qualifications are M.A. or M.S. degree with three (3) years of
experience directly related to the duties stated above. Candidate should
have knowledge of cell biology (preferably some neuroscience) and
histology; knowledge of embedding and sectioning material for light,
confocal and electron microscopy, operation and theory of light, confocal
and electron microscopes; excellent interpersonal, verbal, and written
communication skills. For a full job description, please follow this link:

https://ut.taleo.net/careersection/ut_health_science_center/jobdetail.ftl?j
ob=15000000FL

I would also be happy to answer any questions regarding this position.


Sincerely,

Amanda

--
Amanda Preston, Ph.D
Technical Manager
Neuroscience Imaging Center
University of Tennessee Health Science Center
311 Link Building
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 9 May 2015 18:14:05 -0500
Subject: [Microscopy] viaWWW:Workshop: Bioapplications with Atomic Force Microscopy

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Email: rhsia-at-umaryland.edu
Name: Ru-ching Hsia

Organization: University of Maryland Baltimore, Electron Microscopy Core Imaging Facility

Title-Subject: [Filtered] UMB Current EM Techniques workshop and Chesapeake Microscopy
&Micoranalysis Society Spring Dinner

Message: UMB and Chesapeake Microscopy & Microanalysis Society Current Electron Microscopy
Techniques Workshop and Spring Dinner

May 28th and 29th, 2015.

Dear Colleagues,

This is to remind you that registration for the UMB/CMMS Current EM Techniques Workshop and Spring
Dinner will close on May 21st, 2015, 5 PM.

This year’s workshop will be focused on immuno electron microscopy (IEM). The format includes oral
presentations, instrument demonstrations and Tips-and-Tricks discussion forums. Dr. Kent McDonald
from UC Berkeley will be keynote speaker this year. Other speakers include application specialists
from Carl Zeiss Microscopy, Aurion and Nanoprobes. Demo instruments will feature the high pressure
freezer (Leica EMPACT 2), automated and quick freeze substitution systems, cryo-ultramicrotome, grid
plunger, cryo-TEM, cryo-SEM and CorrSight CLEM solution. There will be four Tips-and-Tricks
discussion forum sessions led by experienced panelists to discuss various aspects of pre-embedding,
post-embedding, Tokuyasu immunolabeling techniques and alternative non-antibody labeling.
The Chesapeake Microscopy and Microanalysis Society (CMMS) Spring Dinner will be held on the evening
of May 28th providing opportunities for social and scientific exchange among workshop participants
and CMMS members.

More information regarding the workshop and registration can be found on our website
http://www.dental.umaryland.edu/2015currentemtechniquesworkshop/

Please email at coreimaging-at-umaryland.edu for any inquiries about the workshop. We look forward to
welcoming you in Baltimore soon.

Electron Microscopy Core Imaging Facility
University of Maryland, Baltimore


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From mike.sfsd4f564s6df45dst-at-gmail.com Sat May 9 00:43:14 2015
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Email: Pamela-at-afmworkshop.com
Name: Pamela Stone

Organization: AFMWorkshop

Title-Subject: [Filtered] AFM Bio Training Course


What: Workshop: Bioapplications with Atomic Force Microscopy
When: July 16-17
Where: Signal Hill, CA

Atomic force microscopes (AFMs) enable advanced measurements of
biological samples that are not possible with other microscopy techniques. These
include measuring high resolution images of biomolecules and cells in
ambient as well as in situ liquid environments. In addition to
measuring images, an AFM can capture force/displacement curves that give a
quantitative measurement of a specimen's stiffness or of molecular
interaction forces.

This two day course provides the operational concepts of an atomic
force microscope as well as hands-on AFM =C2=AD experience. Morning classes
cover the range of AFM bioapplications, while afternoon labs provide applications
training using the TT-AFM as well as the LS-AFM.

Biological topics covered in the course:
- Sample preparation for biological experiments
- Imaging biological samples in air and in liquid
- Measuring Force-Distance curves for sample stiffness or
intermolecular
force determination

Attendees with all levels of AFM experience, and owners of all makes
and models of AFMs, are welcome.

For more information, please visit:
http://www.afmworkshop.com/afm-bioapplications.html

Thank you,
Pamela Stone
AFMWorkshop, Inc.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 11 May 2015 08:09:09 -0500
Subject: [Microscopy] viaWWW:Patchy TEM negatives

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Email: P.J.F.Harris-at-reading.ac.uk
Name: Peter Harris

Organization: University of Reading

Title-Subject: [Filtered] Patchy TEM negatives

Message: We are still using photographic film to record TEM images, and we have a persistent problem
with the negatives coming out very patchy and uneven. Sometimes this obscures detail in the image.
Apart from "buy a high-res digital camera", does anyone have any suggestions?

Many thanks

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From: protrain-at-emcourses.com
Date: Mon, 11 May 2015 08:56:33 -0500
Subject: [Microscopy] RE: viaWWW:Patchy TEM negatives

Contents Retrieved from Microscopy Listserver Archives
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Hi

Wow, this takes me back to my time as a Hitachi demonstrator in the 1970s!
We had Ilford as a customer, and one thing that they taught me, that helped
me past this problem, was to follow the "Dunk and Tilt" procedure.

1. Submerge the film in the developer and tap the rack on the tank base (to
remove air bubbles).
2. After 15secs lift out the film and tilt to one side for 2secs.
3. Repeat the procedure, including tapping, tilting to alternates sides as
you pass through the development cycle.
4. Place in running water for one minute.
5. Follow exactly the same procedure in the fix, for the for the first one
and a half minutes, before allowing the fixation to be completed.
6. Wash in running water for 30 minutes, with the drain above the level of
the film.
7. Immerse in a wetting agent, a few drops of soap solution in a developing
tank full of water.
8. Dry in a cabinet with the temperature no higher than 100deg F.

The only further problem I had to solve was fogging of the negatives,
because I did not know that darkroom filters only have a specific "safe"
life! This problem is generated by the amount of time the film spends out in
the dark room as it is being processed.

I used a point source enlarger that gave amazing contrast, but equally
amazing could see even the most subtle patches within the negatives.
Following the above solved my problem and went a long way in helping Hitachi
secure TEM orders.

Good Luck

Steve

Steve Chapman FRMS
Electron Microscopy Consultancy and Training
www.emcourses.com
Cell +44 (0)7711606967


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Email: P.J.F.Harris-at-reading.ac.uk
Name: Peter Harris

Organization: University of Reading

Title-Subject: [Filtered] Patchy TEM negatives

Message: We are still using photographic film to record TEM images, and we
have a persistent problem with the negatives coming out very patchy and
uneven. Sometimes this obscures detail in the image.
Apart from "buy a high-res digital camera", does anyone have any
suggestions?

Many thanks

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21, 22 -- Subject: RE: [Microscopy] viaWWW:Patchy TEM negatives
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From: wtivol-at-sbcglobal.net
Date: Mon, 11 May 2015 20:45:30 -0500
Subject: [Microscopy] Re: viaWWW:Patchy TEM negatives

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi,
as Steve suggests, even development needs agitation.
What you can do prior to the developer to enhance even development is:
- immerse your rack with the films into plain water with the same temeprature as the developer for one minute, agitate and tap
films to the tank base to remove air bubble adhering to the films
- then put rack into the developer, add ca. 30-40 seconds more time than usual to allow for replacement of the water in the film
with developer

- rinse
- fix etc.

Foggy negatives can also result from a weak developer, exhausted fixer. Are you sure solutions are still good?
Be sure to use an active stop bath (3% acetic acid) before fixer. Water might not be good enough for this job...

Sometimes the problem is the film.
You can contact me offline with the name of the producer ;-)


Best,
Stefan



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Websites:
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Am 11.05.15 um 15:20 schrieb microscopylistserver-noreply-at-microscopy.com:
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} Email: P.J.F.Harris-at-reading.ac.uk
} Name: Peter Harris
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}
} Title-Subject: [Filtered] Patchy TEM negatives
}
} Message: We are still using photographic film to record TEM images, and we have a persistent problem
} with the negatives coming out very patchy and uneven. Sometimes this obscures detail in the image.
} Apart from "buy a high-res digital camera", does anyone have any suggestions?
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11, 23 -- From stefan.diller-at-t-online.de Mon May 11 09:24:37 2015
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From mike.newsletter30ujgyl-at-gmail.com Mon May 11 14:35:24 2015
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On May 11, 2015, at 6:36 AM, microscopylistserver-
noreply-at-microscopy.com wrote:

}
}
}
} Email: P.J.F.Harris-at-reading.ac.uk
} Name: Peter Harris
}
} Organization: University of Reading
}
} Title-Subject: [Filtered] Patchy TEM negatives
}
} Message: We are still using photographic film to record TEM images,
} and we have a persistent problem
} with the negatives coming out very patchy and uneven. Sometimes this
} obscures detail in the image.
} Apart from "buy a high-res digital camera", does anyone have any
} suggestions?
}
} Many thanks
}

Dear Peter,
If you use bubbling N2 gas to agitate the developer, uneven exposure
to the developer can occur. Try to use either more or less agitation
until the patchiness goes away, or agitate by moving the negative rack
up and down in the tank. If there are limited areas that are uneven,
you can sometimes fix that during printing. N.b., this requires
practice to develop the skill required, but if the first print is not
satisfactory, try another. Good luck.

Yours,
Bill




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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 12 May 2015 07:43:27 -0500
Subject: [Microscopy] viaWWW:post doctoral position in Ghent Belgium

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X-from: chris.guerin-at-irc.vib-ugent.be

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Email: chris.guerin-at-irc.vib-ugent.be
Name: Christopher Guerin

Organization: VIB

Title-Subject: [Filtered] post doctoral position in Ghent Belgium

Message: Hi Everyone:

A 2 year post-doctoral fellowship is available immediately at the VIB Bio Imaging Core in Ghent
Belgium. This position is designed for a person who will work on a joint project with Janssen
Pharmaceutial Group of Companies (J&J) in Beerse, Belgium and the successful candidate will spend
most of their time on the Beerse site.

The project will involve the development of high throughput microscopy for automated imaging of
mouse brain slices and analysis of phenotypic changes in models of neurodegenerative disease.
Additional partners will provide engineering and computational image analysis expertise. The fellow
will be responsible for all aspects of the microscopy and imaging, but will be expected to work
closely together with the computational scientist to explore and validate the image and data analyses.
Profile

​you have a degree in biological sciences
you have some experience of microscopy
experience in or knowledge of mouse neuroanatomy are a plus
recent graduates are welcome to apply
you are an interactive individual
fluency in English is required

We offer:

a renewable 2-year contract
a competitive salary
a position at the interface between industry and the academic world
experience in translational research
excellent skills and training courses

The post will remain open until filled and preference will be given to candidates that can begin
before end of June 2015.

To apply please go to the VIB jobs webpage at:
http://www.vib.be/en/jobs/Pages/Postdoc-Position-at-VIB-Bio-Imaging.aspx

Informal enquiries can be made directly to me at chris.guerin-at-irc.vib-ugent.be

Best regards,

Chris



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From: tina-at-pbrc.hawaii.edu
Date: Tue, 12 May 2015 19:58:58 -0500
Subject: [Microscopy] Can LR White be polymerized in plastic Petri dishes?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Quick, I need to know in the next 2.5 hours (it's still afternoon here in
Hawaii):

Can LR White be polymerized in plastic Petri dishes? I don't know why I
don't know this. I've always used gelatin capsules, but these cells need
to be fixed and preferably embedded in place. Will it polymerize under a
vacuum at 50C? How about with UV in the freezer? I'd prefer the former...

Aloha,
Tina

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 12 May 2015 20:16:47 -0500
Subject: [Microscopy] viaWWW:Disappearing glycogen

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Email: cgoldsmith-at-cdc.gov
Name: Cynthia Goldsmith

Organization: Centers for Disease Control and Prevention

Title-Subject: [Filtered] Disappearing glycogen

Message: For several years, we have lost the ability to visualize glycogen by thin section TEM. As
I recall, this occurred when we changed bottles of DBP in our Epon-substitute/Araldite mixture. Has
anyone else had the glycogen “disappear”, and come up with a solution?

Thank you,
Cynthia Goldsmith
Infectious Diseases Pathology Branch
Centers for Disease Control and Prevention


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From: sergei2-at-ornl.gov
Date: Wed, 13 May 2015 08:19:59 -0500
Subject: [Microscopy] Reminder - Workshop on Big, Deep, and Smart Data Analytics in Materials

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Dear Colleagues

As a reminder - 4 days remain to submit your abstract to the workshop
"Big, Deep, and Smart Data Analytics in Materials Imaging" organized
jointly by the five DOE Nanoscale Science Research Centers (Program
Committee: E. Stach, J. Werner, D. Miller, S.V. Kalinin and J. Schuck),
to be held at Oak Ridge National Laboratory on June 8-10.

This workshop brings together researchers from different imaging
disciplines (electron microscopy, scanning probe microscopy, focused
x-ray, neutron, atom probe tomography, chemical imaging, optical
microscopies) with the experts in mathematical/statistical/computational
approaches to discuss opportunities and future needs in the integration
of advanced data analytics and theory into imaging science. It will
provide a forum to present achievements in the various imaging
disciplines with emphasis on acquisition, visualization, and analysis of
multidimensional data sets, the corresponding approaches for
theory-experiment matching, and novel opportunities for instrumental
development enabled by the availability of high speed data analytic
tools. Additional information regarding this workshop can be found at
http://www.cnms.ornl.gov/JointNSRC2015/. The confirmed invited speakers
include Paul Voyles (UWisc), James Labeau (NCSU), Eric Stach (BNL),
Michael Demkowicz (MIT), Jim Ciston (Berkeley), Kirsten Kleese van Dam
(PNNL), Paul Kotula (Sandia), and many others.

Please note that the abstract deadline (May 17) and registration
deadline (May 25) are coming up soon. Looking forward to seeing you at ORNL!

Sergei

--
Sergei V. Kalinin

Director,
Institute for Functional Imaging of Materials

Theme Leader,
Center for Nanophase Materials Science

Oak Ridge National Laboratory

Phone: (865) 241-0236


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From: mdelann1-at-jhmi.edu
Date: Wed, 13 May 2015 10:35:57 -0500
Subject: [Microscopy] viaWWW:Disappearing glycogen

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Cynthia,
Glycogen can become coalesced into amorphous unstained regions in the
cytoplasm under certain fixing/staining conditions. I have found this in
certain cell types (ie muscle, lung tissue) if you use non-reduced osmium
followed by un-buffered uranyl acetate (aqueous) en-bloc staining.
Generally if you use non-reduced osmium, I would en-bloc with buffered (0.1
M maleate pH 6.2) 2% uranyl acetate. If you do use reduced osmium
(K4Fe(CN)6), then you can continue with aqueous uranyl acetate. A remedy
for material already in plastic is to triple stain the sections: 1% filtered
tannic acid (10 min) followed by 2% uranyl acetate ( aq.) then lead citrate.
This will fill in the amorphous regions and stain the glycogen there, (I
have done this with lung tissue).
Hope this helps;
Michael Delannoy

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Email: cgoldsmith-at-cdc.gov
Name: Cynthia Goldsmith

Organization: Centers for Disease Control and Prevention

Title-Subject: [Filtered] Disappearing glycogen

Message: For several years, we have lost the ability to visualize glycogen
by thin section TEM. As I recall, this occurred when we changed bottles of
DBP in our Epon-substitute/Araldite mixture. Has anyone else had the
glycogen “disappear”, and come up with a solution?

Thank you,
Cynthia Goldsmith
Infectious Diseases Pathology Branch
Centers for Disease Control and Prevention



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From: tina-at-pbrc.hawaii.edu
Date: Wed, 13 May 2015 13:39:03 -0500
Subject: [Microscopy] Re: Can LR White be polymerized in plastic Petri dishes?

Contents Retrieved from Microscopy Listserver Archives
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Thanks to everyone who replied. It was late for most of you ... we needed
to decide before 6:00 pm Hawaii time whether to fix these cells in place
in plastic Petri dishes or to detach them before fixation (which they
don't like). We went ahead and fixed in place, so I will have an answer
for any interested parties next week. I will try to exclude air with Aclar
(if I can find my stash) or something else. Maybe also pull a vacuum.

The replies included 2 "No, not ever!", 2 "Yes, no problem if you exclude
air (which goes without saying), and 7 "Hmmm, maybe, I dunno, good luck
with that".

Mahalo,
Tina

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: alaa.afeef-at-gmail.com
Date: Wed, 13 May 2015 15:35:23 -0500
Subject: [Microscopy] STEM of polymer blends samples

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,

May I have your help with the below issue:

What is the best imaging mode\setup to image polymer blends samples?

Actually, I am trying to image a sample that contains PTB7:PC71BM with DIO.
basically what I am looking for is to generate some contrast between these
three materials. The first one is a sulfur-rich while the second rich with
carbon.DIO is Iodine rich.

We tried to use HAADF and dark field imaging in STEM with low convergence
angle probe in the objective off mode. Unfortunately, it was not successful.

We are not keen to attempt anything with EFTEM, as the doses required to
get good signal to noise are rather high and likely to fry the sample.
Additionally, finding small amounts of I using EFTEM will be very hard
(slow rising edge at a fairly high energy of 619 eV gives very weak signal
and therefore requires a huge dose to see it, which probably destroys the
sample).

I would be very grateful for your help

Regards
--

Ala' Afeef,

PhD Scholar - Glasgow University

==============================Original Headers==============================
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From: zackg-at-berkeley.edu
Date: Wed, 13 May 2015 16:07:24 -0500
Subject: [Microscopy] Fwd: STEM of polymer blends samples

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

If all you want is contrast then plasmonic imaging in EELS will be much, much lower dose than core loss EELS. Here’s an example of plasmonic EELS imaging of block copolymers which will give you some idea of what can be done this way.

http://www.sciencedirect.com/science/article/pii/S0304399110003256#

Zack

On May 13, 2015, at 1:54 PM, alaa.afeef-at-gmail.com wrote:




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Dear Listers,

May I have your help with the below issue:

What is the best imaging mode\setup to image polymer blends samples?

Actually, I am trying to image a sample that contains PTB7:PC71BM with DIO.
basically what I am looking for is to generate some contrast between these
three materials. The first one is a sulfur-rich while the second rich with
carbon.DIO is Iodine rich.

We tried to use HAADF and dark field imaging in STEM with low convergence
angle probe in the objective off mode. Unfortunately, it was not successful.

We are not keen to attempt anything with EFTEM, as the doses required to
get good signal to noise are rather high and likely to fry the sample.
Additionally, finding small amounts of I using EFTEM will be very hard
(slow rising edge at a fairly high energy of 619 eV gives very weak signal
and therefore requires a huge dose to see it, which probably destroys the
sample).

I would be very grateful for your help

Regards
--

Ala' Afeef,

PhD Scholar - Glasgow University

==============================Original Headers==============================
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From: michal.jarnik-at-nih.gov
Date: Sun, 17 May 2015 04:54:10 -0500
Subject: [Microscopy] Embedding fat tissue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all,
My department EM lab is being dismantled. Our TEM is for sale. Let me know if you'd like the link to the listing site to bid on it. It is fully functional and in excellent condition but they do not list it that way for some odd reason. Good scope but film camera. Going cheap! It might be the last functional 902 in the US.

Sad time...but time to let it go.
Beth

==============================Original Headers==============================
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From news3409384uerui-at-gmail.com Sat May 16 21:30:24 2015
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Hi listers,

I would like to get some input on epoxy embedding of Drosophila fat bodies. I understand, technically it should be similar to embedding adipocytes (which I have never done either) - so I expect problem with penetration during fixation. Any recommendations?

Thanks,

Michal Jarnik


==============================Original Headers==============================
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From: nizets2-at-yahoo.com
Date: Tue, 19 May 2015 09:42:58 -0500
Subject: [Microscopy] Pressurized air vs N2

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear colleagues,

yet again a new chapter in the life of a biologist responsible for a FEI Tecnai G20!
Our TEM is connected to a N2 cylinder to deliver the pressure necessary for the valves to work (full story at the end *).
Now we got a new air compressor with all the necessary filters to avoid having water in the lines so I want to use it to feed the TEM valves with pressurized air.
In the water/air rack, we have 2 manometers.
The first one limits the pressure to 5 bar, the lines are labeled CCD camera, blow off (whatever it is) and probably the cushioning of the microscope (it is labeled "S34").
The second one is connected to the first one and limits the pressure to 0,3 bar, it is used for the TEM Valves.

I am concerned with the use of pressurized air in state of N2 because the second manometer has a label "N2 gas".
So my questions:

- can I safely connect pressurized air in state of N2?
- Is there any reason why I would absolutely need a N2 line? (for flushing, f.ex. during the procedure of SF6 filling, we bring a cylinder next to the microscope)

Many thanks in advance!

Stephane

* Full story here:

We then decided to use dry N2 from cylinders to feed the valves until we got a bug in the system, freezing not only the software but also one valve which stays open, wasting all the N2 in one night.
Actually the bug does not occur very often and could be manageable if we woudn't have to order a new N2 cylinder each time. In other words, we are not ready (yet) to upgrade the PC and software just to solve this bug.

==============================Original Headers==============================
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8, 34 -- Date: Tue, 19 May 2015 07:40:13 -0700
8, 34 -- From: Stephane Nizet {nizets2-at-yahoo.com}
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From: js51-at-princeton.edu
Date: Tue, 19 May 2015 10:13:41 -0500
Subject: [Microscopy] Pressurized air vs N2

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Stephane,

You can use pressurized air as your main air supply. The N2 line is for back filling as in a filament exchange, column vent or camera vent. Bringing in a gas cylinder when needed works well.

John

-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: Tuesday, May 19, 2015 11:03 AM
To: John J. Schreiber

Dear colleagues,

yet again a new chapter in the life of a biologist responsible for a FEI Tecnai G20!
Our TEM is connected to a N2 cylinder to deliver the pressure necessary for the valves to work (full story at the end *).
Now we got a new air compressor with all the necessary filters to avoid having water in the lines so I want to use it to feed the TEM valves with pressurized air.
In the water/air rack, we have 2 manometers.
The first one limits the pressure to 5 bar, the lines are labeled CCD camera, blow off (whatever it is) and probably the cushioning of the microscope (it is labeled "S34").
The second one is connected to the first one and limits the pressure to 0,3 bar, it is used for the TEM Valves.

I am concerned with the use of pressurized air in state of N2 because the second manometer has a label "N2 gas".
So my questions:

- can I safely connect pressurized air in state of N2?
- Is there any reason why I would absolutely need a N2 line? (for flushing, f.ex. during the procedure of SF6 filling, we bring a cylinder next to the microscope)

Many thanks in advance!

Stephane

* Full story here:

We then decided to use dry N2 from cylinders to feed the valves until we got a bug in the system, freezing not only the software but also one valve which stays open, wasting all the N2 in one night.
Actually the bug does not occur very often and could be manageable if we woudn't have to order a new N2 cylinder each time. In other words, we are not ready (yet) to upgrade the PC and software just to solve this bug.

==============================Original Headers==============================
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8, 34 -- Date: Tue, 19 May 2015 07:40:13 -0700 8, 34 -- From: Stephane Nizet {nizets2-at-yahoo.com} 8, 34 -- Subject: Pressurized air vs N2 8, 34 -- To: microscopy-at-microscopy.com 8, 34 -- MIME-Version: 1.0 8, 34 -- Content-Type: text/plain; charset=us-ascii ==============================End of - Headers==============================


==============================Original Headers==============================
17, 39 -- From js51-at-princeton.edu Tue May 19 10:13:41 2015
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17, 39 -- CC: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
17, 39 -- Subject: RE: [Microscopy] Pressurized air vs N2
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From: bioanalytics-at-ibilabs.com
Date: Wed, 20 May 2015 08:43:40 -0500
Subject: [Microscopy] No effective replacement for uranyl acetate

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

No Effective Replacement for Uranyl Acetate


Like The Venerable Bicycle, ItĄŚs Safe As Directed!
Because of the scientific appeal as well as the economic benefits
associated with discovery, numerous attempts have been made over the past
decade to find a substance equal to or better than Uranyl Acetate for
medical testing and scientific research. The results of these experiments
are in: there is no effective replacement for Uranyl Acetate.
At IBI Labs, we think the use of Uranyl Acetate is analogous to the
bicycle. Dating to the early 1800s according to historical records, the
bicycle ĄV while enhanced with bells and accessories ĄV today remains a
simple and effective method of personal conveyance. The bicycle really has
not changed since invention. Improvements have been made but still it is a
combination of wheels, seat, handlebars, sprockets, chain, and pedals. And
while one can engage in risky behavior with just about any device, a
bicycle is safe as directed. TodayĄŚs guidelines for use are quite
straightforward: watch where youĄŚre going and wear a helmet!
And so it is with Uranyl Acetate. Follow generally accepted scientific
practices ĄV also known as reading the directions -- and wear
laboratory-grade rubber gloves. ItĄŚs that basic. Simply, the extensive
and longstanding use of Uranyl Acetate as a staining method in electron
microscopy can be traced to the following key attributes:
„Ď Uranyl Acetate staining is easy and quick to perform,

„Ď Uranyl Acetate staining provides results within a few minutes,

„Ď Uranyl Acetate emits a very low level of alpha radiation: 0.37ĄV0.51
microcuries (14ĄV19 kBq) per gram,

„Ď Urany AcetateĄŚs alpha radiation is not harmful when the material
remains external to the human body,

„Ď Uranyl Acetate is commercially available, reasonably priced, and
permitted for national and international shipping.
Uranyl Acetate: Tried and True
The analogy of Uranyl Acetate to the bicycle doesnĄŚt end with the above
items. Extensive experience in the marketplace suggests that despite
attempts by some outliers to introduce alternatives -- such as the highly
toxic and only marginally effective IBI Labs Blue Platinum* -- scientific
and medical researchers find using Uranyl Acetate a lot like riding a
bike: once learned, itĄŚs never forgotten. Tried ĄK true ĄK reliable ĄK
safe ĄK effective ĄK thatĄŚs Uranyl Acetate in a 50 ml beaker (the
scientific equivalent of a nutshell)!

Jump On The Bandwagon
Need a breath of fresh air and some exercise? Hop on a bike ĄK few
activities rival the simple, venerable bicycle.
Need a staining method for electron microscopy? Jump on the Uranyl Acetate
bandwagon ĄK or if youĄŚve been on it, donĄŚt be tempted to get off! No
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-----

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About IBI

International Bio-analytical Industries, Inc. (IBI) is the worldĄŚs
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--
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From: John.Mardinly-at-asu.edu
Date: Thu, 21 May 2015 12:48:37 -0500
Subject: [Microscopy] Does anyone have experience of SGX EDS?

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Dear Listers

A friend asks whether I have experience with SGX Sensortech EDS - I don't,
but I offered to ask the question on this site.

Private communications are just fine!

All comments welcome.

Many thanks in advance.

Ian

Ian Holton PhD
Acutance Scientific Ltd
Steel Bridge Cottage
Sham Farm Road
Eridge Green
Tunbridge Wells
TN3 9JD
Tel:       +44 1892 300 400
Mob:     +44 7774 394 519
Email:   ian-at-acutance.co.uk
www.acutance.co.uk
       




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10, 24 -- Subject: Does anyone have experience of SGX EDS?
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From advertisebz09uiva-at-gmail.com Wed May 20 23:51:15 2015
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Message-ID: {7764FF5C.089D60DB-at-gmail.com}

SGX makes a REALLY nice smart phone app for looking up X-ray line energies!

John Mardinly, ASU


-----Original Message-----
X-from: ian-at-acutance.co.uk [mailto:ian-at-acutance.co.uk]
Sent: Wednesday, May 20, 2015 10:46 AM
To: John Mardinly

Dear Listers

A friend asks whether I have experience with SGX Sensortech EDS - I don't, but I offered to ask the question on this site.

Private communications are just fine!

All comments welcome.

Many thanks in advance.

Ian

Ian Holton PhD
Acutance Scientific Ltd
Steel Bridge Cottage
Sham Farm Road
Eridge Green
Tunbridge Wells
TN3 9JD
Tel:       +44 1892 300 400
Mob:     +44 7774 394 519
Email:   ian-at-acutance.co.uk
www.acutance.co.uk
       




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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 21 May 2015 19:38:05 -0500
Subject: [Microscopy] viaWWW:non-radioactive uranly acetate

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Email: fxwatanabe-at-ualr.edu
Name: Fumiya Watanabe

Organization: UALR Center for Integrative Nanotechnology Sciences

Title-Subject: [Filtered] non-radioactive uranly acetate

Message: Hello Listers,

I just read a post on uranyl acetate and wanted ti ask you a question regarding a particular uranyl
acetate sold by EMS as non radioactive. Does this work same as radioactive ones? Has anybody used
this non-radioactive uranyl acetate? Does it have any kind of limitations?

Their description is at this website:
http://www.emsdiasum.com/microscopy/products/chemicals/tannic.aspx#22400



Unicryl Embedding and Staining Kit

Please see listing in Embedding Media Kits.
RT 14660 kit 300.00 Add to Cart
msdsarrowUranyl Acetate, Reagent, A.C.S.

UO2(OCOCH3)2ˇ2H2O F.W. 424.14
CAS #541-09-3
Assay 98.0-102.0%
Specifications:
Insoluble Matters 0.01
Chloride 0.003%
Sulfate 0.01%
Alkalies (as SO4) 0.05%
Heavy Metals 0.002%
Iron 0.001%

A universal EM stain for thin sections, en-block staining, and negative staining.
RT 22400 25g 155.00 Add to Cart

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 21 May 2015 19:38:48 -0500
Subject: [Microscopy] viaWWW:Unknown structure in Reptile RBC

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Email: ravi.thakkar369-at-gmail.com
Name: Ravi

Title-Subject: [Filtered] Unknown structure in Reptile RBC.

Message: We got unusual structure in reptile RBC. Can any body tell me what is this ?
What are the histological stains to identify this structure.?

Figure 1 : https://www.flickr.com/photos/97321550-at-N08/17909999716/in/dateposted-public/

Figure 2 High Power: https://www.flickr.com/photos/97321550-at-N08/17937041251/in/dateposted-public/

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From: contact-at-integrityscientific.com
Date: Fri, 22 May 2015 03:47:45 -0500
Subject: [Microscopy] Gauss meter app for smartphones

Contents Retrieved from Microscopy Listserver Archives
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Dear John, John, David, Sylvain, Warren and John,

Many thanks indeed for all the feedback. A pretty useful picture emerges from all this and I will feed it all back to my friend.

Many thanks again for your help.

Ian

-----Original Message-----
X-from: John Mitchels [mailto:john.mitchels-at-gmail.com]
Sent: 21 May 2015 22:10
To: ian-at-acutance.co.uk

Dear All,
I was thinking of buying a portable Gauss meter last week to try and track down some electrical interference in our lab. Comment from a colleague - 'oh, just download a free app for your phone'.
So I did; I think there are several ones available but I got Teslameter. It looks really good - and seems to work with reading levels down to 0.1mG. Does anyone know if these apps actually work as well they appear to? Are they accurate?


Richard

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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 22 May 2015 06:32:56 -0500
Subject: [Microscopy] viaWWW:High vacuum coater

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Email: llemgruber-at-gmail.com
Name: Leandro Lemgruber

Organization: University of Glasgow

Title-Subject: [Filtered] High vacuum coater

Message: Dear All

we are planing to get a high vacuum coater. We have two in our hands: a Leica ACE600 and a Quorum Q150R.
Any inputs, e.g. complains, thoughts, opinions, would be greatly appreciated.

Best

Leandro

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From: les-at-zsgenetics.com
Date: Fri, 22 May 2015 07:33:03 -0500
Subject: [Microscopy] Gauss meter app for smartphones

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Greetings Richard,
There are I think two dimensions to this question. The first is technical.
If you are trying to track down sources of interference in your lab, you are
probably concerned with time-varying magnetic fields - often at 60 Hz. The
sensors in a phone will give DC readings, and thus they are not useful to
you. I bought a Tenmars TM-192 3-axis EMF meter ( {$200), which I compared to
a $2000 Hall effect probe, and I found it to compare nicely for purposes of
walking around a space and seeing where "hot spots" are.
The second dimension is economic. Do you want to base expensive decisions
such as room design, instrument selection, instrument placement or
interference abatement on an app you got for free? Be sure your investment
in information gathering is in proportion to the commitments you make based
on the information.

Regards,
Larry Scipioni
ZS Genetics

-----Original Message-----
X-from: contact-at-integrityscientific.com
[mailto:contact-at-integrityscientific.com]
Sent: Friday, May 22, 2015 5:02 AM
To: LES-at-ZSGENETICS.COM

Dear All,
I was thinking of buying a portable Gauss meter last week to try and track
down some electrical interference in our lab. Comment from a colleague -
'oh, just download a free app for your phone'.
So I did; I think there are several ones available but I got Teslameter. It
looks really good - and seems to work with reading levels down to 0.1mG.
Does anyone know if these apps actually work as well they appear to? Are
they accurate?


Richard

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From: wtivol-at-sbcglobal.net
Date: Fri, 22 May 2015 17:41:01 -0500
Subject: [Microscopy] Re: viaWWW:non-radioactive uranly acetate

Contents Retrieved from Microscopy Listserver Archives
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On May 21, 2015, at 6:06 PM, microscopylistserver-
noreply-at-microscopy.com wrote:

} Email: fxwatanabe-at-ualr.edu
} Name: Fumiya Watanabe
}
} Organization: UALR Center for Integrative Nanotechnology Sciences
}
} Title-Subject: [Filtered] non-radioactive uranly acetate
}
} Message: Hello Listers,
}
} I just read a post on uranyl acetate and wanted ti ask you a
} question regarding a particular uranyl
} acetate sold by EMS as non radioactive. Does this work same as
} radioactive ones? Has anybody used
} this non-radioactive uranyl acetate? Does it have any kind of
} limitations?
}
} Their description is at this website:
} http://www.emsdiasum.com/microscopy/products/chemicals/tannic.aspx#22400
}
}
}
} Unicryl Embedding and Staining Kit
}
} Please see listing in Embedding Media Kits.
} RT 14660 kit 300.00 Add to Cart
} msdsarrowUranyl Acetate, Reagent, A.C.S.
}
} UO2(OCOCH3)2ˇ2H2O F.W. 424.14
} CAS #541-09-3
} Assay 98.0-102.0%
} Specifications:
} Insoluble Matters 0.01
} Chloride 0.003%
} Sulfate 0.01%
} Alkalies (as SO4) 0.05%
} Heavy Metals 0.002%
} Iron 0.001%
}
} A universal EM stain for thin sections, en-block staining, and
} negative staining.
} RT 22400 25g 155.00 Add to Cart
}
}
Dear Fumiya,
Uranyl acetate is always radioactive. There are uranium isotopes
whose decay rates are quite low, and in some states, the total
radioactivity is deemed low enough so that UAc can be discarded down
the sink. I expect that this is what EMS has in mind.
Yours,
Bill





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From: benada-at-biomed.cas.cz
Date: Mon, 25 May 2015 03:37:08 -0500
Subject: [Microscopy] Philips CM100 trouble

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Fumiya

As mentioned by Bill uranyl acetate is at best depleted, but never non-radioactive. What you came across is actually a non-radioactive uranyl acetate (!) substitute (!), which consist of "Two lanthanide salts, samarium and gadolinium triacetate". Check the paper quoted in the data sheet.
As a general note, the staining properties of UAc vary substantially between manufacturers and thus between countries (as nobody wants to ship the stuff unless necessary). Testing is the only way to find out.
Best
Chris

} On May 22, 2015, at 8:03 PM, wtivol-at-sbcglobal.net wrote:
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} On May 21, 2015, at 6:06 PM, microscopylistserver-
} noreply-at-microscopy.com wrote:
}
} } Email: fxwatanabe-at-ualr.edu
} } Name: Fumiya Watanabe
} }
} } Organization: UALR Center for Integrative Nanotechnology Sciences
} }
} } Title-Subject: [Filtered] non-radioactive uranly acetate
} }
} } Message: Hello Listers,
} }
} } I just read a post on uranyl acetate and wanted ti ask you a
} } question regarding a particular uranyl
} } acetate sold by EMS as non radioactive. Does this work same as
} } radioactive ones? Has anybody used
} } this non-radioactive uranyl acetate? Does it have any kind of
} } limitations?
} }
} } Their description is at this website:
} } http://www.emsdiasum.com/microscopy/products/chemicals/tannic.aspx#22400
} }
} }
} }
} } Unicryl Embedding and Staining Kit
} }
} } Please see listing in Embedding Media Kits.
} } RT 14660 kit 300.00 Add to Cart
} } msdsarrowUranyl Acetate, Reagent, A.C.S.
} }
} } UO2(OCOCH3)2¡2H2O F.W. 424.14
} } CAS #541-09-3
} } Assay 98.0-102.0%
} } Specifications:
} } Insoluble Matters 0.01
} } Chloride 0.003%
} } Sulfate 0.01%
} } Alkalies (as SO4) 0.05%
} } Heavy Metals 0.002%
} } Iron 0.001%
} }
} } A universal EM stain for thin sections, en-block staining, and
} } negative staining.
} } RT 22400 25g 155.00 Add to Cart
} }
} }
} Dear Fumiya,
} Uranyl acetate is always radioactive. There are uranium isotopes
} whose decay rates are quite low, and in some states, the total
} radioactivity is deemed low enough so that UAc can be discarded down
} the sink. I expect that this is what EMS has in mind.
} Yours,
} Bill
}
}
}
}
}
} ==============================Original Headers==============================
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From mike.sfsd4f564s6df45ds-at-gmail.com Sat May 23 20:18:44 2015
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Hello All,
We have a trouble with our old Philips CM100. The info CRT has gone.
About two weeks the image on it was very faint, but still resolvable.
Now the screen is completely dark. The problem is not in dimming
circuits because the dimming of panel's LEDs is working fine and can be
adjusted. I think that the problem is in CRT tube. Please does anybody
had to solve such problem? I find out that CRT tube (M24-306WR/ED) is
still available on the market.

Thanking for any response in advance.

Oldrich

P.S. No response from service, up to now.


Upozorneni:
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Disclaimer:
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8, 40 -- From benada-at-biomed.cas.cz Mon May 25 03:37:07 2015
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8, 40 -- From: Oldrich Benada {benada-at-biomed.cas.cz}
8, 40 -- To: {microscopy-at-microscopy.com}
8, 40 -- Subject: Philips CM100 trouble
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From: vray-at-partbeamsystech.com
Date: Mon, 25 May 2015 08:31:11 -0500
Subject: [Microscopy] Re: Philips CM100 trouble

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Oldrich,

Replacing CRT is a straight-forward task which is well within the scope
of skills for any decent TV repair technician... look for old-timers who
have actually seen a CRT. To verify that problem is really with CRT and
not malfunction of the dimming circuit you would need help of the EE.
Find one local who is adequately qualified, isn't be afraid touching
TEM, and figure out ways of paying him for doing the job.

Good luck!

Valery
Valery Ray - also with AIM Lab, UMDCP
=======================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844, USA
Phone: +1-978-296-5063
E-Mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com
UMD E-Mail: vray-at-umd.edu

On 5/25/2015 4:39 AM, benada-at-biomed.cas.cz wrote:
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}
} Hello All,
} We have a trouble with our old Philips CM100. The info CRT has gone.
} About two weeks the image on it was very faint, but still resolvable.
} Now the screen is completely dark. The problem is not in dimming
} circuits because the dimming of panel's LEDs is working fine and can be
} adjusted. I think that the problem is in CRT tube. Please does anybody
} had to solve such problem? I find out that CRT tube (M24-306WR/ED) is
} still available on the market.
}
} Thanking for any response in advance.
}
} Oldrich
}
} P.S. No response from service, up to now.
}
}
} Upozorneni:
} Neni-li v teto zprave vyslovne uvedeno jinak, ma tato E-mailova zprava nebo jeji prilohy pouze informativni charakter. Tato zprava ani jeji prilohy v zadnem ohledu ustavy AV CR, v.v.i. k nicemu nezavazuji. Text teto zpravy nebo jejich priloh neni navrhem na uzavreni smlouvy, ani prijetim pripadneho navrhu na uzavreni smlouvy, ani jinym pravnim jednanim smerujicim k uzavreni jakekoliv smlouvy a nezaklada predsmluvni odpovednost ustavu AV CR, v.v.i.
}
} Disclaimer:
} If not expressly stated otherwise, this e-mail message (including any attached files) is intended purely for informational purposes and does not represent a binding agreement on the part of Institutes of AS CR. The text of this message and its attachments cannot be considered as a proposal to conclude a contract, neither the acceptance of a proposal to conclude a contract, nor any other legal act leading to concluding any contract; nor it does not create any pre-contractual liability on the part of Institutes of AS CR.
}
}
} ==============================Original Headers==============================
} 8, 40 -- From benada-at-biomed.cas.cz Mon May 25 03:37:07 2015
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} 8, 40 -- From: Oldrich Benada {benada-at-biomed.cas.cz}
} 8, 40 -- To: {microscopy-at-microscopy.com}
} 8, 40 -- Subject: Philips CM100 trouble
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5, 32 -- From: Valery Ray {vray-at-partbeamsystech.com}
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5, 32 -- To: benada-at-biomed.cas.cz, microscopy-at-microscopy.com
5, 32 -- Subject: Re: [Microscopy] Philips CM100 trouble
5, 32 -- References: {201505250839.t4P8dBoO017121-at-ns.microscopy.com}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 25 May 2015 09:23:58 -0500
Subject: [Microscopy] viaWWW:Looking for affordable second-hand FIB

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X-from: mk-at-seclab.tuwien.ac.at

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Email: mk-at-seclab.tuwien.ac.at
Name: Markus Kammerstetter

Organization: Secure Systems Lab Vienna, Vienna University of Technology

Title-Subject: [Filtered] Looking for affordable second-hand FIB

Message: Hello,

we are a small lab at Vienna University of Technology working in the field of Hardware and
Integrated Circuit Security.
Due to a lack of funding, a major part of our lab equipment is second hand and has been jointly
funded by lab members so far.
As a result, we mostly work with second-hand equipment (i.e. a customized digital SEM, a plasma
etcher, a custom motorized confocal microscope, a sputter coater, a probe station, a wedge bonder, a
CMP polisher, etc.).
To fit our needs, we enjoy working on constantly improving, modernizing and/or customizing our
tools, for instance by developing custom hard- and software, adding newer system components or
machining custom parts. While our equipment is not state of the art, we see the possibility to make
these adaptions and customizations as huge advantage allowing us to fit our tools to our specific
applications.


In that regard, we are looking for an affordable second-hand Focused Ion Beam (FIB) system which we
plan to use for circuit edits on integrated circuits. This involves milling through
passivation/insulation layers (SiO2 or Si3N4) as well as metal layers (e.g. Cu or Al). Using
precursor gas based deposition, the next step involves metal and insulator deposition to re-wire
signals on the die or to make probe pads which we can electrically contact with our probe station
and tungsten microprobe needles on micropositioners.

Ideally, the FIB should have 2 GIS systems installed for the deposition of a metal (e.g. tungsten)
and an insulator (SiO2). For instance, a system as old as a single-beam FEI FIB 200 would still work
well for us and we would be more than happy to have it at our lab.

If you tend to have an older model FIB at your facility and you're planning to sell, it would be
great if you could drop me a line.

Thank you and best regards,
Markus





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From: colijn.1-at-osu.edu
Date: Mon, 25 May 2015 11:10:47 -0500
Subject: [Microscopy] Re: Philips CM100 trouble

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Oldrich,

I just did a quick Google search on the part number and found this
website...
http://crtsolutions.highwire.com/product/m24-306wred

For $200US you can swap the CRT and verify whether it is indeed the
tube. Even if it is a different part of the circuit, at least you will
have a spare tube since they do have a finite lifetime.

No financial interest in the vendor. It was the 1st one on the Google
search list...

Cheers,
Henk


On 5/25/2015 4:39 AM, benada-at-biomed.cas.cz wrote:
}
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} Hello All,
} We have a trouble with our old Philips CM100. The info CRT has gone.
} About two weeks the image on it was very faint, but still resolvable.
} Now the screen is completely dark. The problem is not in dimming
} circuits because the dimming of panel's LEDs is working fine and can be
} adjusted. I think that the problem is in CRT tube. Please does anybody
} had to solve such problem? I find out that CRT tube (M24-306WR/ED) is
} still available on the market.
}
} Thanking for any response in advance.
}
} Oldrich
}
} P.S. No response from service, up to now.
}
}
} Upozorneni:
} Neni-li v teto zprave vyslovne uvedeno jinak, ma tato E-mailova zprava nebo jeji prilohy pouze informativni charakter. Tato zprava ani jeji prilohy v zadnem ohledu ustavy AV CR, v.v.i. k nicemu nezavazuji. Text teto zpravy nebo jejich priloh neni navrhem na uzavreni smlouvy, ani prijetim pripadneho navrhu na uzavreni smlouvy, ani jinym pravnim jednanim smerujicim k uzavreni jakekoliv smlouvy a nezaklada predsmluvni odpovednost ustavu AV CR, v.v.i.
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} 8, 40 -- From benada-at-biomed.cas.cz Mon May 25 03:37:07 2015
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--

Hendrik O. Colijn

*C*enter for *E*lectron *M*icroscopy & *A*nalysi*S*

1305 Kinnear Rd, Suite 100, Columbus, OH 43212

colijn.1-at-osu.edu {mailto:colijn.1-at-osu.edu} 614.643.3458 Office

cemas.osu.edu

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."


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From: jerry.biehler-at-gmail.com
Date: Mon, 25 May 2015 12:37:46 -0500
Subject: [Microscopy] Philips CM100 trouble

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Replacing a crt is a pretty non-trivial task when they do not include the yoke. The problem is screen geometry. There are tiny magnets installed with glue or tape on the yoke and crt that help compensate for irregularities in the magnetic field driving the scan of the crt and to compensate for variances in crt manufacture. You have to adjust the yoke while the machine is on and running which is a bit dangerous.

Before you mess with the crt you need to make sure it is not an issue in the drive. Bad HV from the flyback could cause this as well as a bad transistor in the video drive. You will need a high voltage probe to check the voltage at the anode cap and a o-scope to check the video signals.

-Jerry

} On May 25, 2015, at 9:46 AM, colijn.1-at-osu.edu wrote:
}
}
}
}
} ----------------------------------------------------------------------------
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} ----------------------------------------------------------------------------
}
} Hi Oldrich,
}
} I just did a quick Google search on the part number and found this
} website...
} http://crtsolutions.highwire.com/product/m24-306wred
}
} For $200US you can swap the CRT and verify whether it is indeed the
} tube. Even if it is a different part of the circuit, at least you will
} have a spare tube since they do have a finite lifetime.
}
} No financial interest in the vendor. It was the 1st one on the Google
} search list...
}
} Cheers,
} Henk
}
}
} } On 5/25/2015 4:39 AM, benada-at-biomed.cas.cz wrote:
} }
} }
} } ----------------------------------------------------------------------------
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} }
} } Hello All,
} } We have a trouble with our old Philips CM100. The info CRT has gone.
} } About two weeks the image on it was very faint, but still resolvable.
} } Now the screen is completely dark. The problem is not in dimming
} } circuits because the dimming of panel's LEDs is working fine and can be
} } adjusted. I think that the problem is in CRT tube. Please does anybody
} } had to solve such problem? I find out that CRT tube (M24-306WR/ED) is
} } still available on the market.
} }
} } Thanking for any response in advance.
} }
} } Oldrich
} }
} } P.S. No response from service, up to now.
} }
} }
} } Upozorneni:
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} }
} } Disclaimer:
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} --
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} Hendrik O. Colijn
}
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}
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From: johndmcmaster-at-gmail.com
Date: Mon, 25 May 2015 13:14:31 -0500
Subject: [Microscopy] Missing ezlaze power supply

Contents Retrieved from Microscopy Listserver Archives
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Hi,
I recently acquired a New Wave Research ezlaze 532/355 laser microscope
but the power supply is missing. Any recommendations for how to acquire
a replacement? Maybe someone has a half working system they can part out?

Unit looks like this:
https://siliconpr0n.org/wiki/lib/exe/detail.php?id=nwr%3Aezlaze&media=ebay:ntxsupply:151675355993:6.jpg

There is a parts unit on eBay but they are asking outside of my price
range so I'm trying to explore other options

John

==============================Original Headers==============================
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4, 33 -- From: John McMaster {johndmcmaster-at-gmail.com}
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From: nmz787-at-gmail.com
Date: Mon, 25 May 2015 14:44:01 -0500
Subject: [Microscopy] Re: Philips CM100 trouble

Contents Retrieved from Microscopy Listserver Archives
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In this day and age, are there people retrofitting with LCD panels? That
seems like it would avoid the magnetics and high-voltage.

--
Sent from my Android device with K-9 Mail. Please excuse my brevity.

==============================Original Headers==============================
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2, 37 -- Date: Mon, 25 May 2015 12:43:54 -0700
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From: greggps-at-umich.edu
Date: Mon, 25 May 2015 18:57:05 -0500
Subject: [Microscopy] Philips CM100 trouble

Contents Retrieved from Microscopy Listserver Archives
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} I've investigated converting other devices to LCD. The conversion from analog to digital signal is going to cost a minimum $1,500 US and likely over $2,000. It will also probably involve replacing a wiring harness. Considering the price and lifetime of a CRT, you'll want to stick with them for now. If you can find a lower price for the conversion, let me know.
}
} Regards,
} ~Gregg
}
} Gregg Sobocinski
} Microscope Imaging Specialist
} University of Michigan, MCDB Dept.
} Ann Arbor, Michigan, USA
}
} On Mon, May 25, 2015 at 3:55 PM, {nmz787-at-gmail.com} wrote:
} }
} }
} }
} }
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} } In this day and age, are there people retrofitting with LCD panels? That
} } seems like it would avoid the magnetics and high-voltage.
} }
} } --
} } Sent from my Android device with K-9 Mail. Please excuse my brevity.
} }
} } ==============================Original Headers==============================
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} } 2, 37 -- From: Nathan McCorkle {nmz787-at-gmail.com}
} } 2, 37 -- Date: Mon, 25 May 2015 12:43:54 -0700
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}


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2, 32 -- From: Gregg Sobocinski {greggps-at-umich.edu}
2, 32 -- Date: Mon, 25 May 2015 19:56:33 -0400
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2, 32 -- Subject: Re: [Microscopy] Re: Philips CM100 trouble
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 25 May 2015 22:17:43 -0500
Subject: [Microscopy] viaWWW:Position Opening: Manager (Microscopy Unit) Macquarie University

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Email: lisavandermye-at-adcorp.com.au
Name: Lisa van der Mye

Organization: Macquarie University

Title-Subject: [Filtered] Position Opening: Manager (Microscopy Unit)

Message: The Role
The Faculty of Science and Engineering is seeking an enthusiastic and talented person to provide
expert technical management of the Faculty's Microscopy Unit. Reporting to the Faculty Technical
Manager the appointee will manage the Unit and its resources and provide a comprehensive range of
technical advice and support across light, fluorescence, confocal and electron microscopy.

For further information regarding this role please view
http://jobs.mq.edu.au/cw/en/job/495809/manager-microscopy-unit


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From: Rosemary.White-at-csiro.au
Date: Tue, 26 May 2015 01:35:39 -0500
Subject: [Microscopy] Research Scientist, Microscopy at CSIRO, Australia

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Research Scientist, Microscopy

As Research Scientist, Microscopy, you will engage with a diverse range of
students, postdocs, staff scientists and international visitors, in
training, mentoring and collaborative roles. You will also maintain and
develop microscopy infrastructure to enable current research and plan for
future work. This is a particularly wide-ranging role, requiring both a
deep knowledge of imaging and a broad background in plant biology.

First two requirements:
A doctorate or equivalent research experience in plant cell and/or
molecular biology.
Postgraduate or equivalent research experience, reflected in co-authorship
of publications in plant structure and biology, requiring use of
fluorescence and/or confocal microscopy and/or scanning or transmission
electron microscopy.

Please visit
http://csiro.nga.net.au/cp/index.cfm?event=jobs.jati&returnToEvent=jobs.hom
e&jobID=14145619-bd01-8553-6b48-88b975168783&audienceTypeCode=EXT&UseAudien
ceTypeLanguage=1
for full details about the position and to find out how to apply.

If this link is broken, visit http://csiro.nga.net.au
Select Research Scientists and Engineers.
Find this position in the list.

Closing date 28 June, 2015

Dr Rosemary White
Manager, Microscopy Centre
CSIRO Agriculture, Black Mountain
GPO Box 1600
Canberra, ACT 2601

T 02 6246 5475
E rosemary.white-at-csiro.au

for further information.



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From: k.rola-at-int.pan.wroc.pl
Date: Tue, 26 May 2015 02:22:36 -0500
Subject: [Microscopy] Re: SEM/EDS - problem with standardless quantitative analysis

Contents Retrieved from Microscopy Listserver Archives
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Dear all,

I would like to thank everyone for advices, they were all valuable.
Especially, I would like to thank Harry Verhulst from Ametek BV, who
helped me solve the problem. The geometry settings of the system were
incorrect and, after the correction of these settings, the quant results
are much better.

Kind regards,

Krzysztof Rola

W dniu 2015-05-08 o 15:59, K.Rola pisze:
} Dear all,
}
} I work with FEI Nova NanoSEM 230 equipped with Apollo 40 detector by
} EDAX. I have a problem concerning wrong results of EDS quantitative
} analysis in a standardless mode. This happens for some of our samples,
} such as CaF2, In2O3, CeO2, hydroxyapatite as well as for standards
} (from SPI supplies), such as fluorapatite, indium phosphide, etc. I
} realize that the standardless analysis method is not an accurate one,
} though the differences between real and measured values seem to be too
} large (up to about 10%). For example, fluorapatite contains 38,6 wt%
} of Ca, while the measured value for Ca is 28,9 wt%.
} I tried to find a solution for the problem. I made a calibration using
} Cu and Al K lines. I checked HPD, but there was a good fit between
} measured and theoretical spectra. I was changing various parameters,
} such as working distance, spot size, acceleration voltage, time
} constant, but differences between real and measured values were
} roughly remaining the same. Next, I tried to use SEC parameters
} correction. For example, based on the In2O3 and InP, I set SEC value
} for phosphor. Nevertheless, this deteriorated the results of
} quantitative analysis for a pentaphosphate. It seems that SEC
} correction is not a sufficient solution.
} Finally, I tried measurement using our old and rarely used Philips SEM
} 515 microscope equipped with SUTW+ detector (also by EDAX) cooled with
} liquid nitrogen. Surprisingly, results of quantitative analysis for
} hydroxyapatite turned out to be almost correct. This suggests a
} problem with the newer Apollo detector.
} Does the detector work wrong? Is there any solution to this problem,
} which can be found by a user?
}
} Krzysztof Rola
}
} Institute of Low Temperature and Structural Research
} Polish Academy of Sciences
} Wroclaw, Poland
}


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From: oshel1pe-at-cmich.edu
Date: Tue, 26 May 2015 07:29:47 -0500
Subject: [Microscopy] Re: Ask-A-Microscopist

Contents Retrieved from Microscopy Listserver Archives
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Valerie,

They do resemble emptied fungal spores, and there are structures (on the
right of the clump, and center of the clump going to the left) that look
like sporangial stalks. If this is what they are, then the Mn and Fe is
probably from the soil - or, the Mn is really S, which one would expect
in a spore wall. Lots of S-containing proteins, especially if (*IF*)
this is a) fungal and b) a fungus with keratinous cell walls.
But ...
I wouldn't go beyond "resembles" on just this image.
Should be lots of fungal bits and pieces in your soil sample.

Phil

On 05/22/2015 15:41 , AssociationManagement-at-microscopy.org wrote:
} Below is the result of your form, submitted on Friday, May 22, 2015 at 03:41:39 PM.
}
} realname - Valerie Lecomte
} Email - valerie.lecomte-at-usherbrooke.ca
} ORGANIZATION - University of Sherbrooke
} EDUCATION - Graduate College
} LOCATION - Sherbrooke. Qc, Canada
} SUBJECT_OF_QUESTION - soil unidentified particle
} QUESTION - Dear community members,
}
} I am doing a research project on metals in humic soils (humus in brunisol and podzol). I look at dried soil samples with a SEM under variable pressure, without coating, and I found a particular structure (see dropbox link bellow). I would like to know if someone can confirm what it is. I am thinking that it could be dessicated fungus. The image is a BSD image and the structure contains mainly carbon and oxygen, but also manganese, iron and calcium.
}
} Thanks for your help,
} Regards,
} Valerie
}
} https://www.dropbox.com/s/1bcvhh1vuwyuxj8/Soil.jpeg?dl=0
}
}

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: jehrman-at-mta.ca
Date: Tue, 26 May 2015 08:54:24 -0500
Subject: [Microscopy] part time chiller use - best strategy?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi listers,

I'm in the enviable position of replacing our diffusion pumped SEM with
a new one (Yay!) which will almost certainly be turbo pumped. Up until
this time, the Haskris chiller has served both the SEM with occasional
diversion of some of the flow to the vacuum evaporator. My question is,
what's the best way to handle this now fairly minor use of the chiller -
typically once a month or less? I was thinking of options such as
running up both pieces of equipment on a weekly basis, but maybe someone
else has come up with a better plan. It seems rather wasteful and
possibly harmful to let the chiller run 24/7 with no load, and likewise
the evaporator really doesn't need to be on all the time. Also any
advice on what additives I should be using to the water would be
helpful. Right now I'm using 10% propylene glycol, but don't know if
this is the best coolant to be using with occasional use.

Thanks in advance,

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

There's no future in time travel.


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From: sergei2-at-ornl.gov
Date: Tue, 26 May 2015 10:52:56 -0500
Subject: [Microscopy] Last day for registration - workshop on Big, Deep, and Smart Data

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear colleagues

As a reminder - 24 hours remain to register for the workshop "Big, Deep,
and Smart Data Analytics in Materials Imaging" organized jointly by the
five DOE Nanoscale Science Research Centers (Program Committee: E.
Stach, J. Werner, D. Miller, S.V. Kalinin and J. Schuck), to be held at
Oak Ridge National Laboratory on June 8-10.

This workshop brings together researchers from different imaging
disciplines (electron microscopy, scanning probe microscopy, focused
x-ray, neutron, atom probe tomography, chemical imaging, optical
microscopies) with the experts in mathematical/statistical/computational
approaches to discuss opportunities and future needs in the integration
of advanced data analytics and theory into imaging science. It will
provide a forum to present achievements in the various imaging
disciplines with emphasis on acquisition, visualization, and analysis of
multidimensional data sets, the corresponding approaches for
theory-experiment matching, and novel opportunities for instrumental
development enabled by the availability of high speed data analytic tools.

The program and invited speaker list is now available at
http://www.cnms.ornl.gov/JointNSRC2015/.

Looking forward to seeing you at ORNL!

Sergei

--
Sergei V. Kalinin

Director,
Institute for Functional Imaging of Materials

Theme Leader,
Center for Nanophase Materials Science

Oak Ridge National Laboratory

Phone: (865) 241-0236


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From: fahayes-at-ucdavis.edu
Date: Tue, 26 May 2015 17:38:21 -0500
Subject: [Microscopy] looking for a HT cable for a Polaron E5100 sputter coater

Contents Retrieved from Microscopy Listserver Archives
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We have a BioRad / Polaron E5100 sputter coater with a broken HT cable that needs replacing. Serial number 88107. Cable is approx. 12-15 inches in length and is coaxial. Does anyone have a spare, or know of a supplier for parts?

Thank you

Fred Hayes
AMCaT Lab Manager
Chem Engr and Mat Sci
Univ of CA Davis
Davis CA 95616
5300-752-0284


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From: wtivol-at-sbcglobal.net
Date: Tue, 26 May 2015 18:28:16 -0500
Subject: [Microscopy] Re: part time chiller use - best strategy?

Contents Retrieved from Microscopy Listserver Archives
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On May 26, 2015, at 7:13 AM, jehrman-at-mta.ca wrote:

} Hi listers,
}
} I'm in the enviable position of replacing our diffusion pumped SEM
} with
} a new one (Yay!) which will almost certainly be turbo pumped. Up until
} this time, the Haskris chiller has served both the SEM with occasional
} diversion of some of the flow to the vacuum evaporator. My question
} is,
} what's the best way to handle this now fairly minor use of the
} chiller -
} typically once a month or less? I was thinking of options such as
} running up both pieces of equipment on a weekly basis, but maybe
} someone
} else has come up with a better plan. It seems rather wasteful and
} possibly harmful to let the chiller run 24/7 with no load, and
} likewise
} the evaporator really doesn't need to be on all the time. Also any
} advice on what additives I should be using to the water would be
} helpful. Right now I'm using 10% propylene glycol, but don't know if
} this is the best coolant to be using with occasional use.
}
} Thanks in advance,
}
} Jim
}
} --
}
} James M. Ehrman
} Digital Microscopy Facility
} Mount Allison University
} 63B York St.
} Sackville, NB E4L 1G7
} CANADA


Dear Jim,
Does the Haskris cool the SEM lenses? In this case keeping them at
constant temperature makes the scope more stable. When I was in
charge of the HVEM, we left the chillers on all the time, and in over
20 years we had no problems. We added an anti-corrosion preparation
from Aqua Labs, Aquatreet 42, which was Mo-based, and we kept the pH
between 7.5 and 8 to prevent solvation of the Cu tubing. If Aqua Labs
cannot supply the product, Skasol has a similar one. (Aqua supplied
the East, and Skasol, at least, the West).
Yours,
Bill




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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 26 May 2015 22:39:27 -0500
Subject: [Microscopy] viaWWW:mitochondria contrast

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Name: David Lowry

Organization: ASU

Title-Subject: [Filtered] mitochondria contrast

Message: we have a few mammalian skeletal muscle samples that are already embedded in Spurr’s resin.
They were conventionally fixed with glutaraldehyde and OsO4, and en bloc stained with uranyl
acetate. The mitochondria are poorly contrasted within the muscle fibers using uranyl acetate (50%
ethanolic solution) and lead citrate post-staining. Section thickness is 70 nm. Are there any
modified post-staining techniques that can preferentially enhance contrast of the mitochondria vs
the surrounding muscle fibers?

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From: benada-at-biomed.cas.cz
Date: Wed, 27 May 2015 01:53:27 -0500
Subject: [Microscopy] Re: Philips CM100 trouble

Contents Retrieved from Microscopy Listserver Archives
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Thank you all,
Who kindly provided me with valuable advices. I hope we will be able to
solve our CM100 problem soon.

My best regards Oldrich

--
Oldrich Benada
Institute of Microbiology AS CR, v.v.i.
Videnska 1083
142 20 Prague 4
Czech Republic




Upozorneni:
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From: benada-at-biomed.cas.cz
Date: Wed, 27 May 2015 02:09:52 -0500
Subject: [Microscopy] Re: looking for a HT cable for a Polaron E5100 sputter

Contents Retrieved from Microscopy Listserver Archives
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Hi Fred,
Did you try to contact Quorum Technologies? They have E5100 on the list
of partially supported devices.
{http://www.quorumtech.com/customer-support/product-and-spares-supported.html}

I hope they could help you.

Best regards Oldrich

--
Oldrich Benada
Institute of Microbiology AS CR, v.v.i.
Videnska 1083
142 20 Prague 4
Czech Republic

tel.: 241062399

On Tue, 26 May 2015 17:44:08 -0500, fahayes-at-ucdavis.edu wrote :
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} We have a BioRad / Polaron E5100 sputter coater with a broken HT
} cable that needs replacing. Serial number 88107. Cable is approx.
} 12-15 inches in length and is coaxial. Does anyone have a spare, or
} know of a supplier for parts?
}
} Thank you
}
} Fred Hayes
} AMCaT Lab Manager
} Chem Engr and Mat Sci
} Univ of CA Davis
} Davis CA 95616
} 5300-752-0284
}
}
} ==============================Original
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10, 45 -- From benada-at-biomed.cas.cz Wed May 27 02:09:52 2015
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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 27 May 2015 17:21:24 -0500
Subject: [Microscopy] viaWWW:anti-GFP antibody for IEM

Contents Retrieved from Microscopy Listserver Archives
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David,
You can try triple staining with 1% filtered and aq. Tannic acid (10 min)
before the UA and Pb. The grids must be formvar coated as the copper will
react with the TA.

Sincerely,
Michael Delannoy

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Email: dlowry-at-asu.edu
Name: David Lowry

Organization: ASU

Title-Subject: [Filtered] mitochondria contrast

Message: we have a few mammalian skeletal muscle samples that are already
embedded in Spurr’s resin.
They were conventionally fixed with glutaraldehyde and OsO4, and en bloc
stained with uranyl acetate. The mitochondria are poorly contrasted within
the muscle fibers using uranyl acetate (50% ethanolic solution) and lead
citrate post-staining. Section thickness is 70 nm. Are there any modified
post-staining techniques that can preferentially enhance contrast of the
mitochondria vs the surrounding muscle fibers?

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24, 23 -- From prvs=582b1d32e=mdelann1-at-jhmi.edu Wed May 27 08:41:25 2015
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From advertise.bz222p-at-gmail.com Wed May 27 13:47:05 2015
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Email: schauflingerm-at-missouri.edu
Name: Martin

Organization: UM

Title-Subject: [Filtered] anti-GFP antibody for IEM

Message: Hello everyone.

I am looking for an anti-GFP antibody that works for both pre- and postembedding labeling
approaches. My samples are GFP expressing E. coli. Ideally the antibody should work on FA/GA fixed
samples. I'd appreciate any information about antibodies (that are still available!) that have been
successfully used on LR-Gold, HM20, or similarly embedded samples.

Thanks!

Martin



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From: nizets2-at-yahoo.com
Date: Thu, 28 May 2015 05:52:46 -0500
Subject: [Microscopy] UEMO

Contents Retrieved from Microscopy Listserver Archives
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Dear colleagues,
I found unknown EM-related objects in the TEM room and wanted to ask if you can help me identify them.
We have a technai G20 and I suppose these pieces belong to it.
I am no expert in picture sharing through external sites, so let's give it a try:

https://www.flickr.com/gp/24377807-at-N02/S232aH
https://www.flickr.com/gp/24377807-at-N02/j85kC9

Hope the links work.
Thanks!

Stephane

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4, 28 -- ibYNmAOTtDIVLp8YSav18rAbAdvljLji71Ipm5UkzP1gGHPJCqwHBHlW__LrH6grg.jugIywY.ty
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4, 28 -- Received: by 66.196.80.126; Thu, 28 May 2015 10:52:41 +0000
4, 28 -- Date: Thu, 28 May 2015 10:52:41 +0000 (UTC)
4, 28 -- From: Stephane Nizet {nizets2-at-yahoo.com}
4, 28 -- Reply-To: Stephane Nizet {nizets2-at-yahoo.com}
4, 28 -- To: Microscopy Listserver {microscopy-at-microscopy.com}
4, 28 -- Message-ID: {845131800.342119.1432810361044.JavaMail.yahoo-at-mail.yahoo.com}
4, 28 -- Subject: UEMO
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From: stefan.diller-at-t-online.de
Date: Thu, 28 May 2015 06:34:52 -0500
Subject: [Microscopy] Re: UEMO

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Dear Stephane,
your first image might show - when I look at my Philips EM420 gun
section - a top cover on the upper column and IGP valve section to keep
it under vacuum during transport.
The second image is an adapter piece for the bottom mount flange on the
Tecnai or something else belonging to a FEI / Philips SEM.
My proposal would be: keep them...


Best wishes,
Stefan

Am 28.05.2015 um 13:00 schrieb nizets2-at-yahoo.com:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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}
} Dear colleagues,
} I found unknown EM-related objects in the TEM room and wanted to ask if you can help me identify them.
} We have a technai G20 and I suppose these pieces belong to it.
} I am no expert in picture sharing through external sites, so let's give it a try:
}
} https://www.flickr.com/gp/24377807-at-N02/S232aH
} https://www.flickr.com/gp/24377807-at-N02/j85kC9
}
} Hope the links work.
} Thanks!
}
} Stephane
}
} ==============================Original Headers==============================
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} 4, 28 -- Date: Thu, 28 May 2015 10:52:41 +0000 (UTC)
} 4, 28 -- From: Stephane Nizet {nizets2-at-yahoo.com}
} 4, 28 -- Reply-To: Stephane Nizet {nizets2-at-yahoo.com}
} 4, 28 -- To: Microscopy Listserver {microscopy-at-microscopy.com}
} 4, 28 -- Message-ID: {845131800.342119.1432810361044.JavaMail.yahoo-at-mail.yahoo.com}
} 4, 28 -- Subject: UEMO
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--



-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.nanoflight.info
www.electronmicroscopy.info
www.elektronenmikroskopie.info
www.assisi.de
www.zwillingsprojekt.de
www.stefan-diller.com
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 29 May 2015 08:18:44 -0500
Subject: [Microscopy] viaWWW:Post doc opening in Ghent/Beerse Belgium

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Email: gary-at-microtechnics.com
Name: Dr. Gary Gaugler

Organization: Microtechnics

Title-Subject: [Filtered] SEM documents

Message: Hi all:

I have the following docs that need a new home other than the landfill or shredder:

1. Hitachi S-2700 operator manual and schematics
2. AMR 1000 service manual and brochures
3. PGT IMIX tutorial Version 7
4. CAM SCAN Series 4 brochure
5. ISI Topcon DS-130, DS-130F and WB-6 brochures
6. Polaron E5200 manual with schematics
7. Hitachi S-570 manuals, schematics, all documentation
8. Two (2) Amray 1800 series schematics, PCB layouts #118-163

Please contact me off-line for shipping costs that I'd like reimbursed. The brochures are on me. The
manuals are not light weight.



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From benny0439655322345345uky-at-gmail.com Thu May 28 18:00:16 2015
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Email: chris.guerin-at-irc.vib-ugent.be
Name: Christopher Guerin

Organization: VIB Bio Imaging COre

Title-Subject: [Filtered] Post doc opening in Ghent/Beerse Belgium

Message: Postdoc Position at VIB Bio Imaging

Description

​A 2 year post-doctoral fellowship is available immediately at the VIB Bio Imaging Core
(http://bio-imaging-core.be/) in Ghent Belgium. This position is designed for a person who will work
on a joint project with Janssen Pharmaceutial Group of Companies (J&J) in Beerse, Belgium and the
successful candidate will spend most of their time on the Beerse site.

The project will involve the development of high throughput microscopy for automated imaging of
mouse brain slices and analysis of phenotypic changes in models of neurodegenerative disease.
Additional partners will provide engineering and computational image analysis expertise. The fellow
will be responsible for all aspects of the microscopy and imaging, but will be expected to work
closely together with the computational scientist to explore and validate the image and data analyses.

Profile

​You have a doctoral degree in biological sciences
you have some experience of microscopy
experience in or knowledge of mouse neuroanatomy are a plus
recent graduates are welcome to apply
you are an interactive individual
fluency in English is required
We offer:

a renewable 2-year contract
a competitive salary
a position at the interface between industry and the academic world
experience in translational research
excellent skills and training courses
The post will remain open until filled and preference will be given to candidates that can begin
before end of June 2015.


Interested candidates should apply through the VIB JOBS webpage
http://www.vib.be/en/jobs/Pages/Postdoc-Position-at-VIB-Bio-Imaging.aspx

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From: mike_toalson-at-tedpella.com
Date: Fri, 29 May 2015 17:36:35 -0500
Subject: [Microscopy] MATC Workshop on Microwave Tissue Processing for EM

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X-from: guy.vermeildeconchard-at-fr.netgrs.com

2015 Workshop on Microwave Tissue Processing for EM

Date:  June 24-26
Location:  Madison Area Technical College, Madison, WI
Information & Agenda:
http://www.tedpella.com/company_html/WorkshopAnnouncement_L5.htm

Presenters:
Cindy Smith – Microwave Product Manager, Ted Pella Inc. - 530-243-2200 x259
Michael Kostrna – Director, MATC EM Lab, Madison Area Technical College - 
608-243-4309
Mark Sanders – Program Director, University Imaging Center, University of
Minnesota  612-624-7938

Explore the ease and efficiency of tissue processing with the PELCO BioWaveŽ
Pro. Hands-on techniques will address electron microscopy and immunolabeling
in the microwave environment. Basic fundamentals and troubleshooting will be
covered as well as novel approaches unique to the PELCO BioWaveŽ Pro.

Mike Toalson
VP Sales & Marketing
Ted Pella, Inc.
PO Box 492477
Redding, CA 96049
Tel: 530-243-2200 x205
Mob: 530-356-5921
mike_toalson-at-tedpella.com
http://www.tedpella.com





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9, 20 -- Subject: MATC Workshop on Microwave Tissue Processing for EM
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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 May 2015 07:32:28 -0500
Subject: [Microscopy] viaWWW:TEM, SEM sample cutting

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Email: schlagel-at-iastate.edu
Name: Deborah Schlagel

Organization: the Ames Laboratory

Title-Subject: [Filtered] TEM, SEM sample cutting

Message: Hello!

I am looking for recommendations for a diamond wire saw to cut oriented single crystals of non-
conducting alloys and ceramics. My requirements are: table top style; preferably can accept SouthBay
model 260 3-axis goniometers (~4”x4”x4”) or has available 3-axis goniometer accessory; can cut up to 1”
diameter or larger (this size of sample mounted to a 3-axis goniometer); reliable; easy to use;
accurate,
reproducible cut.

I have considered SouthBay, Well Diamond Saws, MTI and Precision Wire Saw models but am not finding
reviews. I would like to know from end users what they think about these saws before I buy one.
Thanks in advance!


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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 30 May 2015 07:32:28 -0500
Subject: [Microscopy] rviaWWW:Preparation of yeast cells for SEM observation

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Email: fxwatanabe-at-ualr.edu
Name: Fumiya Watanabe

Organization: University of Arkansas at Little Rock

Title-Subject: [Filtered] Preparation of yeast cells for SEM observation

Message: Dear Listers,

I have been asked by a biology faculty to analyze his yeast cell samples by our SEM (JEOL 7000F, no
LV mode) to find out how much Cd atoms his cells have absorbed (by EDS).

I Googled sample preparation methods for yeast cells, and it seems difficult or complicated. If any
of you is an expert in this, please help us out by sending your protocol (or guide me to the
reference).

I've found this ref, but it says this is for LV mode:
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4121316/

Best regards,


Fumiya

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From: pamela-at-afmworkshop.com
Date: Mon, 1 Jun 2015 11:10:29 -0500
Subject: [Microscopy] Advanced AFM Operation Techniques Workshop

Contents Retrieved from Microscopy Listserver Archives
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I have particularly good experience with Well Wire Saws (http://www.welldiamondwiresaws.com/index.html). I have used these saw for years and was able to cut ceramics very precisely and reproducibly. Look at the accessories for goniometers and microscopes.

This is really the only type of diamond wire saw I have worked with, so I have no comparative data. Also, I do not have any financial interest in the company! Just consider it a recommendation.

Good luck with your search!
Klaus can Benthem

Sent from one of my iThings
Please excuse any tipos or erors

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From mike.sfsd4f564s6df45dswxyiu-at-gmail.com Sat May 30 17:38:35 2015
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Message-ID: {1C78AFEE.459FF0A5-at-gmail.com}

~You Are Invited~

When: July 13-14, 2015
Where: Signal Hill,CA
What: Advanced AFM Operation Techniques – Workshop

It's relatively easy to measure images of samples with dimensions of 50
nm (requiring a magnification of 10,000X) or greater with an atomic
force microscope (AFM). However, it's often necessary to measure images
with features as small as 1 nm (requiring a magnification of
1,000,000X). Measuring images with such high magnification requires
specialized skill in the operation of an AFM.

This two-day advanced operator course is designed to help attendees
learn the skills required for measuring high-resolution AFM images and
is led by AFM experts Peter Eaton, Ph.D. And Paul West, Ph.D. Four
samples are scanned to assure specific skills are mastered. The four
samples and their associated skills are as follows:
1. Silicon test pattern - calibrating the AFM,basic operation skills;
2. Silicon Substrate – measuring noise floor;
3. Nanoparticles – probe approach;
4. BOPP polymer sample – controlling probe-sample forces.

The course mixes lecture with labwork on atomic force microscopy
operation. While we will utilize AFMs from AFMWorkshop to teach basic
concepts and demonstrate
AFM operation, attendees with experience on any make or model of AFM
instrument will find the labwork relevant and practical.

For more information, please visit:
http://www.afmworkshop.com/advanced-afm-operation-techniques.html

Thank you,
Pamela Stone
AFMWorkshop


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From: cbuser125-at-gmail.com
Date: Mon, 1 Jun 2015 15:18:40 -0500
Subject: [Microscopy] RE: viaWWW:anti-GFP antibody for IEM

Contents Retrieved from Microscopy Listserver Archives
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Hi Martin,

In my hands the best commercially available anti-GFP antibody is the #
70R-GG001, Fitzgerald Industries International, which I used a lot on yeast
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4113337/
The Abcam290 worked nearly as well.
Your real problem will be your prep. GFP is sensitive to GA and complete
dehydration. All my labeling attempts with a bunch of antibodies failed if
the FS had more than 0.5% GA or if the specimen was completely dehydrated.
Read the discussion in the paper and contact me if you need more details.

Best,
Chris



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Email: schauflingerm-at-missouri.edu
Name: Martin

Organization: UM

Title-Subject: [Filtered] anti-GFP antibody for IEM

Message: Hello everyone.

I am looking for an anti-GFP antibody that works for both pre- and
postembedding labeling approaches. My samples are GFP expressing E. coli.
Ideally the antibody should work on FA/GA fixed samples. I'd appreciate any
information about antibodies (that are still available!) that have been
successfully used on LR-Gold, HM20, or similarly embedded samples.

Thanks!

Martin



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Subject: [Microscopy] rviaWWW:Basic Confocal Microscopy Workshop

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Title-Subject: [Filtered] Basic Confocal Microscopy Workshop

Message: There are still a few slots open in the upcoming Basic Confocal Microscopy Workshop at the
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During the week of June 15-19 the University of South Carolina Instrumentation Resource Facility
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 1 Jun 2015 17:55:44 -0500
Subject: [Microscopy] viaWWW:Synaptosome Preparation

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Title-Subject: [Filtered] Synaptosome Preparation

Message: I am looking for information regarding synaptosome fix/stain/embedding for TEM. Does
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Has anyone compared preps to determine what works best for visualization of the pre- & post synaptic
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From: nizets2-at-yahoo.com
Date: Tue, 2 Jun 2015 02:19:45 -0500
Subject: [Microscopy] Particle sizing with REM

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Title-Subject: [Filtered] Looking for RJLee PSEM Schematics

Message: Hello,

we have an older model RJ Lee Instruments PSEM Scanning Electron Microscope and we're looking for
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From ohn.bullocknewsniyhp-at-gmail.com Mon Jun 1 23:14:35 2015
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Message-ID: {48F9725E.AEC1F5EB-at-gmail.com}

Dear TEMers/REMers and OTHers,

I (biologist) have had an animated discussion with a colleague material scientist.
The question is: is it possible to measure the size of microparticles (some aluminium-containing mineral) by embedding them, preparing a fine flat surface, coating and analyzing in REM with W gun in BSE mode (I think this is called microprobe analysis in the material science world, far far away in another galaxy).
My colleague says it is no problem, really.

I say I see 2 objections (really):
- the first one is that the interaction volume is much bigger in BSE mode than in SE mode (Mr Chapman's rule n°3), decreasing the lateral resolution, which is already a problem for particle sizing in REM
- the second one is more theoretical: by sectionning microparticles, we get all sorts of cross-sections. By measuring the diameter of the crossections we don't get the measure of the mean diameter of the particles but a much more spread size distribution which is not centered on the actual diameter of the particles.

Des commentaires?
Your Comments?
Kommentare?
Quando se come aqui?

Stephane


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From: oshel1pe-at-cmich.edu
Date: Tue, 2 Jun 2015 07:35:34 -0500
Subject: [Microscopy] Re: Particle sizing with REM

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Stephane,

You are right.
The problem of size distribution caused by serial sectioning can be
overcame by
a) Assuming all of the particles are the same size and are randomly
distributed in the embedding medium - dangerous assumptions at best
or
b) Serial sectioning the block and imaging the block face - this
requires an ultratome within the SEM (=REM) chamber, but such things
exist now:
Leighton, S.B. 1981. SEM images of block faces, cut by a miniture
microtome within the SEM - a technical note. Scan Electron Microsc.
1981;(Pt 2):73-6.
Wanner, A.A., et al. 2015. Challenges of microtome-based serial
block-face scanning electron microscopy in neuroscience. J. Microscopy
doi: 10.1111/jmi.12244 23 April on-line.
or
c) Micro-CT within the SEM or by itself.

This still leaves all of the issues in your 1st objection and the basic
"where's the edge?" question. Even in secondary imaging this is an
issue. How important depends on the particle size - if they're
micrometers in size the error won't be too big relative to the particle;
if they're nanometers in size, the error can be relatively big.
Either way, why not use light or TEM microscopy to size the particles?
These would be more accurate.

Phil

} Dear TEMers/REMers and OTHers,
}
} I (biologist) have had an animated discussion with a colleague material scientist.
} The question is: is it possible to measure the size of microparticles (some aluminium-containing mineral) by embedding them, preparing a fine flat surface, coating and analyzing in REM with W gun in BSE mode (I think this is called microprobe analysis in the material science world, far far away in another galaxy).
} My colleague says it is no problem, really.
}
} I say I see 2 objections (really):
} - the first one is that the interaction volume is much bigger in BSE mode than in SE mode (Mr Chapman's rule n°3), decreasing the lateral resolution, which is already a problem for particle sizing in REM
} - the second one is more theoretical: by sectionning microparticles, we get all sorts of cross-sections. By measuring the diameter of the crossections we don't get the measure of the mean diameter of the particles but a much more spread size distribution which is not centered on the actual diameter of the particles.
}
} Des commentaires?
} Your Comments?
} Kommentare?
} Quando se come aqui?
}
} Stephane
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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5, 32 -- Subject: Re: [Microscopy] Particle sizing with REM
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From: Nicolas.Stephant-at-univ-nantes.fr
Date: Tue, 2 Jun 2015 09:19:34 -0500
Subject: [Microscopy] Particle sizing with REM

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Dear Stephane,
Interaction volume in BSE is bigger than in SE but is not so big if
accelerating voltage is low enought. This volume can be small enought,
at low voltage, if the mean atomic number of particles is not too poor.
Many BSE detectors are now efficient under 5kV; if you can use a FE SEM
with a good BSE detector just above the sample (some millimeters) you
may obtain a good result.
More than lateral resolution the precision of the measure may be
affected by the calibration of magnification. For such job it could be
interesting to check accuracy of magnification with an appropriate
standard.
You can easily simulate how far is the interaction volume for your
sample using a software like CASINO for example. If you are lucky, may
be you will find a good value for accelerationg voltage; not too deep on
the sample to avoid resolution problem but enought deep to get BSE from
all the volume of the particles. In that case, probably you will see the
diameter of the particle and not only the diameter of the sectionned
disk on the surface. Of course it supposes good correlation beetween
several factors : Z number of particles, Z number of matrix, size of
particles, etc...

Nicolas STEPHANT

Université de Nantes
Institut Jean Rouxel
Service de microscopie électronique ŕ balayage et microanalyse
2 rue de la Houssiničre
BP 92208
44322 Nantes cédex 3

Tél : 02 40 37 64 26
Mél : nicolas.stephant-at-univ-nantes.fr
Web : http://cnrs-imn.fr

"Le monde n'existe que pour autant que nous sommes capables d'en produire une image"
C.G Jung

Le 02/06/2015 14:54, oshel1pe-at-cmich.edu a écrit :
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} Stephane,
}
} You are right.
} The problem of size distribution caused by serial sectioning can be
} overcame by
} a) Assuming all of the particles are the same size and are randomly
} distributed in the embedding medium - dangerous assumptions at best
} or
} b) Serial sectioning the block and imaging the block face - this
} requires an ultratome within the SEM (=REM) chamber, but such things
} exist now:
} Leighton, S.B. 1981. SEM images of block faces, cut by a miniture
} microtome within the SEM - a technical note. Scan Electron Microsc.
} 1981;(Pt 2):73-6.
} Wanner, A.A., et al. 2015. Challenges of microtome-based serial
} block-face scanning electron microscopy in neuroscience. J. Microscopy
} doi: 10.1111/jmi.12244 23 April on-line.
} or
} c) Micro-CT within the SEM or by itself.
}
} This still leaves all of the issues in your 1st objection and the basic
} "where's the edge?" question. Even in secondary imaging this is an
} issue. How important depends on the particle size - if they're
} micrometers in size the error won't be too big relative to the particle;
} if they're nanometers in size, the error can be relatively big.
} Either way, why not use light or TEM microscopy to size the particles?
} These would be more accurate.
}
} Phil
}
} } Dear TEMers/REMers and OTHers,
} }
} } I (biologist) have had an animated discussion with a colleague material scientist.
} } The question is: is it possible to measure the size of microparticles (some aluminium-containing mineral) by embedding them, preparing a fine flat surface, coating and analyzing in REM with W gun in BSE mode (I think this is called microprobe analysis in the material science world, far far away in another galaxy).
} } My colleague says it is no problem, really.
} }
} } I say I see 2 objections (really):
} } - the first one is that the interaction volume is much bigger in BSE mode than in SE mode (Mr Chapman's rule n°3), decreasing the lateral resolution, which is already a problem for particle sizing in REM
} } - the second one is more theoretical: by sectionning microparticles, we get all sorts of cross-sections. By measuring the diameter of the crossections we don't get the measure of the mean diameter of the particles but a much more spread size distribution which is not centered on the actual diameter of the particles.
} }
} } Des commentaires?
} } Your Comments?
} } Kommentare?
} } Quando se come aqui?
} }
} } Stephane


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From: philippe.buffat-at-epfl.ch
Date: Tue, 2 Jun 2015 20:00:57 -0500
Subject: [Microscopy] RE: Particle sizing with SEM

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Dear Stephane and colleagues,
Why do you like a complicated approach to a simple question? Remove the
bulk substrate!

The easiest would be to cast a water or ethanol suspension of your
particles on a TEM C-film/Cu 200 mesh grid, then go to see a colleague
who runs a TEM or STEM microscope!
Too far? Too expensive? No friend? Be self-standing...

1.- First obvious solution: stick your TEM grid on top of a 10mm deep
2mm diameter hole drilled in any light conductive material block (Al
alloy is fine). Look at it in SE mode as usual, you will avoid all the
trouble of electrons spreading in the substrate, BSE backscattering and
secondaries of type 2. Of course the W cathode is not as good as a FEG
for ultimate resolution, but nevertheless will give a better resolution
than BSE.

2.- Assuming you have a semi-conductor BSE detector, you can easily
transform your SEM in S(T)EM microscope.
With a bit of manual skill you can carefully mount your BSE detector on
the sample table (upside-down to receive the primary probe!) , then with
a light U-shape jig hold the TEM grid some 10-15mm above the centre of
the BSE detector. The BSE signal becomes a STEM one. However the
contrast is not well defined as both directly transmitted (bright field)
and scattered electrons (dark field+HAADF) are detected together.

3.- to improve the contrast, you may add a beam stop to catch the
transmitted beam and let only the scattered electrons to reach the BSE
detector (DF+HAADF). Or you may cover the BSE detector, letting only a
2mm hole to get the directly transmitted beam and BF contrast. Lazy? You
may even more easily mount the BSE detector off-centre to block the
directly transmitted electrons on its edge and detect only electrons
scattered in 2 quadrants (DF+HAADF, 50% signal).
The efficiency of detection is high, it means you may use lower beam
currents than usual and certainly much lower than for BSE. Expect a
better resolution in this STEM mode than in SE.
Beware! Contamination may be a limiting factor depending on your vacuum
quality and require to work fast, even to record pictures on fresh areas
adjacent to that used for focusing.
Enjoy
Philippe

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From: microscopylistserver-noreply-at-microscopy.com
Date: Wed, 3 Jun 2015 07:58:12 -0500
Subject: [Microscopy] viaWWW:Convert EELS to .dm3

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Email: debangshu-at-psu.edu
Name: Debangshu Mukherjee

Organization: The Pennsylvania State University

Title-Subject: [Filtered] Convert to .dm3

Message: Hello,
Digital Micrograph records EEL spectra as .dm3 files. While there are scripts that can export the
data to a text file - I am wondering whether the reverse is possible?
I have a two column .txt file of my EELS data - will it be possible to import that data into Digital
Micrograph for further processing?
Regards,
Debangshu Mukherjee

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From: ray.twesten-at-sbcglobal.net
Date: Wed, 3 Jun 2015 22:19:22 -0500
Subject: [Microscopy] viaWWW:Convert EELS to .dm3

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Dear Debangshu,
There is a feature in the GMS "File" menu called "Import Data ...". This
is a fully functioned import tool that handles most data types. For
importing EELS data, the spectra most be represented in equally spaced
energy bins. If it is just a single row of data with the intensity values,
you can convert this to EELS and calibrate using the "Spectrum" menu items.

If the data is in an energy, intensity format, there is no simple way to
convert it to EELS data. I have included a short DMScript that handles
imported data where the first row (or column) contains the energy values and
the second row (or column) contains the EELS counts.

I hope this helps,
Ray

Disclosure: I work for Gatan but I am not a programmer. I am sure the code
below breaks a dozen rules. I learned scripting as a user of Gatan
equipment and continue to use it when analyzing data, trying out new ideas
or prototyping. This is unsupported script code.



// ********************
image ConvertImportToEELS( image img )
{
number sx, sy
number specLength, specDim, d0slice2, d1slice2

img.Get2dSize(sx, sy )

if(sx == 2)
{
specDim = 1
specLength = sy
d0slice2 = 1
d1slice2 = 0
}
else if(sy == 2)
{
specDim = 0
specLength = sx
d0slice2 = 0
d1slice2 = 1
}
else
throw("Imported spectrum must be 2xn or nx2")

image energy, counts

energy := img.slice1(0,0,0, specDim, specLength, 1)
counts := img.slice1(d0slice2, d1slice2, 0, specDim, specLength,
1).imageclone()

// Calibrate data and set tags.
number OneDCalOffset = 0.0, OneDCalScale = 1.0;
string energyUnits = "eV";
string spectrumType = "EELS";
OneDCalScale = (max(energy) - min(energy))/specLength;
OneDCalOffset = min(energy);

counts.ImageSetDimensionCalibration(0, OneDCalOffset, OneDCalScale,
energyUnits, 0);
counts.SetStringNote("Meta Data:Format", "Spectrum");
counts.SetStringNote("Meta Data:Signal", spectrumType );

counts.setName(img.GetName() + "_Spec")

//counts.ShowImage()
//energy.ShowImage()

return(counts);
}

image thisImage := GetFrontImage()
thisImage.ConvertImportToEELS().ShowImage()

//*******************************


Ray D. Twesten
Livermore, CA


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Email: debangshu-at-psu.edu
Name: Debangshu Mukherjee

Organization: The Pennsylvania State University

Title-Subject: [Filtered] Convert to .dm3

Message: Hello,
Digital Micrograph records EEL spectra as .dm3 files. While there are
scripts that can export the data to a text file - I am wondering whether the
reverse is possible?
I have a two column .txt file of my EELS data - will it be possible to
import that data into Digital Micrograph for further processing?
Regards,
Debangshu Mukherjee

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 4 Jun 2015 07:28:09 -0500
Subject: [Microscopy] viaWWW:DM4 to DM3?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Does anyone have a dongle for the Kevex AIA2 analysis software for EDX? Thermo was unable to help me.

-Jerry

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From mike.sfsd4f564s6df45dsjyeo-at-gmail.com Wed Jun 3 23:35:09 2015
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Email: j.werkmann-at-gmail.com
Name: werckmann

Organization: INMETRO

Title-Subject: [Filtered] DM4 to DM3

Message: Hello,
Every body know how transform DM4 to DM3 format Gatan
Thanks for your help
Jacques

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 4 Jun 2015 07:29:02 -0500
Subject: [Microscopy] viaWWW:UMB cryo-ultramicrotomy mini-course, July 28th and 29th, 2015.

Contents Retrieved from Microscopy Listserver Archives
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Email: rhsia-at-umaryland.edu
Name: Ru-ching Hsia

Organization: University of Maryland, Baltimore

Title-Subject: [Filtered] cryo-ultramicrotomy course

Message: UMB cryo-ultramicrotomy mini-course, July 28th and 29th, 2015.

Instructors: Helmut Gnaegi, Diatome Ltd.
Maximum number of participants: 6

Dear Colleagues,

We are pleased to announce that the Electron Microscopy Core Imaging Facility (EMCIF) at the
University of Maryland Baltimore will be offering a cryo-ultramicrotomy mini-course on July 27th and
28th, 2015. The targeted participants of this course are individuals who are experienced with
ultramicrotome operation at ambient temperature and wish to extend their skills to include
sectioning CEMOVIS and Tokuyasu immmunolabeling specimen.
The course will include lectures, demonstration and hands on practice. More information regarding
the course and registration can be found in our website

http://www.dental.umaryland.edu/2015ultramicrotomecourse/
Please email coreimaging-at-umaryland.edu for any inquiries.

Thanks.


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From: trh-at-uoregon.edu
Date: Thu, 4 Jun 2015 09:30:36 -0500
Subject: [Microscopy] Workshop on Determining the Composition and Structure of Small

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We're excited to announce the second Oregon Challenges Workshop on
Determining the Composition and Structure of Small Volumes on July
30-31, 2015 at the University of Oregon.

The workshop includes two days of talks from experts in electron
microscopy, X-ray microscopy, atom probe tomography, and field ion
microscopy and will focus on device applications of these techniques.

The full program is available here:
https://blogs.uoregon.edu/smallvol2/program

Registration is $160, or $125 for students; the registration form is
here: https://blogs.uoregon.edu/smallvol2/registration

If you'll be coming to Portland for M&M, consider coming a few days
early and heading down to Eugene for this great workshop. It's only two
hours away by train or car. Hope to see you there!

Dr. Benjamin McMorran
Assistant Professor of Physics
Materials Science Institute and Oregon Center for Optics
Department of Physics
1274 University of Oregon
Eugene, OR 97403-1274
office phone: 541-346-8624


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7, 29 -- Volumes
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From: ray.twesten-at-sbcglobal.net
Date: Thu, 4 Jun 2015 19:47:57 -0500
Subject: [Microscopy] viaWWW:DM4 to DM3?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Jacques,
The DigitalMicrograph application has a "Batch Convert" option that will
convert files of various formats. It will allow changing from DM4 to DM3
format. It you do not have the application, a free version can be
downloaded from:
{ http://www.gatan.com/products/tem-analysis/gatan-microscopy-suite-software
}

Hope this helps,
Ray

Disclaimer: I am an employee of Gatan

Ray D. Twesten
Livermore, CA

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Message: Hello,
Every body know how transform DM4 to DM3 format Gatan Thanks for your help
Jacques

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 4 Jun 2015 20:49:03 -0500
Subject: [Microscopy] viaWWW:TEM imaging for food samples

Contents Retrieved from Microscopy Listserver Archives
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X-from: hayriyekaraca-at-uky.edu

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Email: hayriyekaraca-at-uky.edu
Name: Hayriye Cetin-Karaca

Organization: University of Kentucky

Title-Subject: [Filtered] TEM imaging for food samples

Message: Hi,

I am a PhD candidate at Food Science department in University of Kentucky.
My research involves high pressure processing and natural antimicrobials to inhibit pathogens in
infant formula and infant cereal.

We’d like to use TEM to observe the structural changes in pathogens after high pressure and natural
microbial applications.

Since we have food samples, we can not do chemical substitution for TEM observation. We need to
prepare the samples with freeze-substitution or high pressure freezing and then do thin sectioning
or do CryoTEM.
Unfortunately we don’t have a core facility at our university with freeze substitution or CryoTEM
capability.

Is there a freeze-substitution/ high pressure freezing/CryoTEM facility which could process our food
samples to visualize bacterial structure?

Thanks

Hayriye



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From: zaluzec-at-microscopy.com
Date: Mon, 8 Jun 2015 20:42:03 -0500
Subject: [Microscopy] viaWWW:Frontiers in Light Microscopy, Nov. 17, 2015

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Good morning listers,

See:

http://www.mta.ca/uploadedFiles/Community/Administrative_departments/Financial_Services/Procurement/Surplus_Assets/Surplus%20letter%203.pdf

Available sometime around October 2015 when the new microscope is
delivered. SEM has been under constant service contract. No significant
operational issues on any of the components. As I believe this scope has
many useful years left in it, I'd hate to see it scavenged for parts or
dumpstered.

Feel free to contact me off list with any questions.

Cheers,

Jim

--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

A programmer walks to the butcher shop
and buys a kilo of meat. An hour later
he comes back upset that the butcher
shortchanged him by 24 grams.


==============================Original Headers==============================
12, 20 -- From jehrman-at-mta.ca Fri Jun 5 06:44:33 2015
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From mike.sfsd4f564s6df45dshgtwy-at-gmail.com Fri Jun 5 17:58:20 2015
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Email: vicenzie-at-si.edu
Name: Edward Vicenzi

Organization: Smithsonian Institution

Title-Subject: [Filtered] Staff position available at the Smithsonian
Institution

Message: Job Title:Physical Scientist
Agency:Smithsonian Institution
Job Announcement Number:15A-SR-300473-DEU-MCI

Details are available at USAjobs.gov:
https://www.usajobs.gov/GetJob/ViewDetails/405820700


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From ferguson651651615poeuu-at-gmail.com Sat Jun 6 20:57:17 2015
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Email: romina.cialdella-at-nih.gov
Name: Romina Cialdella

Organization: National Cancer Institute

Title-Subject: [Filtered] Register for Frontiers in Light Microscopy,
Nov. 17, 2015

Message: Register for Frontiers in Light Microscopy

The Center for Cancer Research at the National Cancer Institute invites
you to a one-day national symposium entitled "Frontiers in Light
Microscopy" on November 17, 2015 at the National Institutes of Health
main campus in Bethesda, Maryland. The program includes recent advances
in the field and should be an exciting forum for discussion and debate
on the current state of the field.

Sessions include:
1. Tissue Imaging
2. Probes
3. Super-Resolution

Speakers:
• Peter Friedl
• Hari Shroff
• Roberto Weigert
• Wesley Legant
• Samie Jaffrey
• Klaus Hahn
• Daniel Larson
• Joerg Bewersdorf
• Jennifer Lippincott-Schwartz
• Na Ji

Registration is free, but seating is limited so be sure to register early.

Register here:
http://ncifrederick.cancer.gov/events/LightMicroscopy/register.asp

Conference website:
http://ncifrederick.cancer.gov/events/LightMicroscopy/default.asp

Please mark November 17, 2015 on your calendar for this exciting event,
and forward this email to colleagues.

For conference-related questions, please contact
conferenceplanning-at-mail.nih.gov.


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From: steven.spurgeon-at-pnnl.gov
Date: Thu, 11 Jun 2015 19:02:49 -0500
Subject: [Microscopy] Beam broadening calculations for STEM-EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We've AGAIN updated our free image processing instructions from the NUANCE Center at Northwestern University.
A few additions have been made to include explanations of file types, how to resize images the right way, and even some new coloring instructions.
All of which are designed to be super easy and will walk the user step-by-(sometimes painful) step to do all sorts of normal image processing procedures, to several different procedures to apply false color to an image.
THE EXTRA SPECIAL PART is the chapter on what I call Multi-Detector Color. Now I know I did not invent this technique, BUT I've worked out some pretty simple procedures that will allow you to make these really fantastic color images, even if you only have 1 SE detector in your SEM.
It's totally free, so please check it out and let us know what you think.

http://www.nuance.northwestern.edu/docs/epic-pdf/Basic_Photoshop_for_Electron_Microscopy_06-2015.pdf



ERiC Jay Miller
Microscopy & Imaging Specialist
Electron Probe Instrumentation Center

Northwestern University
Mail: 2036 Cook Hall
Office: 1152 Cook Hall
2220 Campus Drive
Evanston, IL 60208-3108

ph: (847) 467-0789

http://www.nuance.northwestern.edu




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From benny0439655322345345t-at-gmail.com Wed Jun 10 21:21:33 2015
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Hello everyone,

I am looking for a program that will help me calculate beam broadening for STEM-EDS measurements. In particular, I’d like to figure out the maximum achievable spatial resolution given a known sample composition, zone axis, thickness, energy, and so on. Does anyone know if there is a freely available program that can help me with these calculations?

Thanks!
______________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate

Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999 MSIN:K8-87
Richland, WA 99352

Tel: +1-509-371-7123
steven.spurgeon-at-pnnl.gov
www.stevenspurgeon.com {http://www.stevenspurgeon.com/}
www.pnnl.gov {http://www.pnnl.gov/}


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From: eliceiri-at-wisc.edu
Date: Sat, 13 Jun 2015 11:11:45 -0500
Subject: [Microscopy] Announcement: 5th ImageJ User and Developer Conference at UW-Madison

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


On Jun 11, 2015, at 5:18 PM, steven.spurgeon-at-pnnl.gov wrote:

} Hello everyone,
}
} I am looking for a program that will help me calculate beam
} broadening for STEM-EDS measurements. In particular, I’d like to
} figure out the maximum achievable spatial resolution given a known
} sample composition, zone axis, thickness, energy, and so on. Does
} anyone know if there is a freely available program that can help me
} with these calculations?
}
} Thanks!
} ______________________________________
} Steven R. Spurgeon, Ph.D.
} Postdoctoral Research Associate
} Fundamental and Computational Sciences Directorate
}
} Pacific Northwest National Laboratory
} 902 Battelle Boulevard
} P.O. Box 999 MSIN:K8-87
} Richland, WA 99352
}
} Tel: +1-509-371-7123
} steven.spurgeon-at-pnnl.gov
} www.stevenspurgeon.com {http://www.stevenspurgeon.com/}
} www.pnnl.gov {http://www.pnnl.gov/}
}
Dear Steven,
David Joy wrote such a program some time ago. I hope someone else on
the list knows how to get a hold of it.
Yours,
Bill





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From advertise.bz222vhhoa-at-gmail.com Thu Jun 11 22:28:07 2015
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The 2015 ImageJ User and Developer Conference (http://conference.imagej.net/) will be in Madison, Wisconsin on September 3rd and 4th, and you're invited to take part!


This conference will complement the European meetings in Luxembourg and will offer workshops to improve software knowledge and usage for both beginner/user and advanced/developer topics. The conference will provide a community forum for ImageJ development over the past three years and will also feature shorter presentations highlighting case studies, plugins, and solutions to common problems. Submissions from the ImageJ community for 10 minute "lightning talk" presentations; 60 to 120 minute workshops; and scientific posters for the parallel poster session are warmly encouraged and those who wish to attend and/or participate should apply by July 1st.


Submissions for all audiences - from novice user to advanced developer - are welcome. The focus of the conference is on community, so tools being presented must be made publicly available before the start of the conference.


There is no registration fee for this conference and reception due to support from the University of Wisconsin-Madison and LOCI, but attendees are responsible for their own travel and lodging expenses. Additional information can be found on http://conference.imagej.net/ and specific questions are welcomed by the committee organizers at conference-at-imagej.net.


--
Kevin W. Eliceiri
Director, Laboratory for Optical and Computational Instrumentation (LOCI)
Departments Cell and Molecular Biology and Biomedical Engineering
Director Medical Engineering, Morgridge Institute for Research (MIR)
Room 271 Animal Sciences, 1675 Observatory Drive, Madison, WI 53706
Phone: 608-263-6288


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From: frank_karl-at-ardl.com
Date: Mon, 15 Jun 2015 07:12:34 -0500
Subject: [Microscopy] meassurements: It's how small?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Monday, the start of another workweek but I thought I'd ask a question of the collective wisdom.

How many decimal points do you report or believe when making measurements with:

SEM?
TEM?
LM?

Do you report numbers suggesting you can measure to one thousandth of a nanometer? How about a hundredth of a micron or micrometer? What about EDS analysis? On a non-flat, non-homogeneous sample can you actually measure to a tenth of 1 wt%? How about hundredth?


Will I get a lot of Out-of-Office responses and do I believe them?

Questions on Monday morning to start the gray matter working.\

Stay safe................
Frank



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From: colijn.1-at-osu.edu
Date: Mon, 15 Jun 2015 07:56:44 -0500
Subject: [Microscopy] Re: Beam broadening calculations for STEM-EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steve,

You can also try using the Monte Carlo programs by Gauvin and Demers
group (WinXray and Casino) or DTSA-II (N. Ritchie, NIST). The
cross-sections are more accurate for SEM work, but they should be good
enough to give you an idea of your beam spreading. DTSA-II has an
option for a thin film on substrate and you can define the substrate as
"none".

Win X-ray
MC X-ray
http://montecarlomodeling.mcgill.ca/software/softwareprojects.html

Casino
http://www.gel.usherbrooke.ca/casino/

DTSA-II
http://www.cstl.nist.gov/div837/837.02/epq/dtsa2/

Cheers,
Henk


On 6/11/2015 8:05 PM, steven.spurgeon-at-pnnl.gov wrote:
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} I am looking for a program that will help me calculate beam broadening for STEM-EDS measurements. In particular, I’d like to figure out the maximum achievable spatial resolution given a known sample composition, zone axis, thickness, energy, and so on. Does anyone know if there is a freely available program that can help me with these calculations?
}
} Thanks!
} ______________________________________
} Steven R. Spurgeon, Ph.D.
} Postdoctoral Research Associate
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--

Hendrik O. Colijn

*C*enter for *E*lectron *M*icroscopy & *A*nalysi*S*

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cemas.osu.edu

"Time is that quality of nature which keeps things from happening all at
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From: zaluzec-at-aaem.amc.anl.gov
Date: Mon, 15 Jun 2015 08:09:25 -0500
Subject: [Microscopy] Re: measurements: It's how small? or more importantly what is your accuracy and precision....

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Frank

I would contend, that you are asking the wrong question. The subject
should be accuracy and precision of a measurement.

It is not how many digits you report after a measurement, but
more importantly, reporting of the standard error with any measurement
be it dimension, composition or whatever. Both accuracy and precision.

Without an measurement error estimate then the number of digits is irrelevant.

My 2 cents.

Nestor
Your Friendly Neighborhood SysOp


BTW, I chuckle at seeing measurements reported more than 3 significant figures
and no error bars.


On Jun 15, 2015, at 7:12 AM CDT, {frank_karl-at-ardl.com} {frank_karl-at-ardl.com} wrote:

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} Monday, the start of another workweek but I thought I'd ask a question of the collective wisdom.
}
} How many decimal points do you report or believe when making measurements with:
}
} SEM?
} TEM?
} LM?
}
} Do you report numbers suggesting you can measure to one thousandth of a nanometer? How about a hundredth of a micron or micrometer? What about EDS analysis? On a non-flat, non-homogeneous sample can you actually measure to a tenth of 1 wt%? How about hundredth?
}
}
} Will I get a lot of Out-of-Office responses and do I believe them?
}
} Questions on Monday morning to start the gray matter working.\
}
} Stay safe................
} Frank
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===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
NanoScience and Technology Division
9700 S. Cass Ave
Bldg 212 / A-143
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Email: Zaluzec-at-aaem.amc.anl.gov


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iChat: Zaluzec-at-AIM.com
Skype: Zaluzec
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Senior Scientist - Argonne National Laboratory
Fellow of the Microscopy Society of America
Senior Fellow the Computational Institute - University of Chicago
E.P. Wigner Fellow - Oak Ridge National Laboratory
Past President Microscopy Society of America
Adjunct Professor of Physics - Northern Illinois University &
the University of Illinois at Chicago
Visiting Professor of Microscopy - Manchester University

===========================================
TPMLab: http://tpm.amc.anl.gov
MMSite: http://www.amc.anl.gov
===========================================

The box said ...
"This program requires Win 95/98/NT or better..."
So I bought a Mac !

===========================================
LLAP
=========================================+=====



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From: drix00-at-gmail.com
Date: Mon, 15 Jun 2015 09:12:17 -0500
Subject: [Microscopy] Re: Beam broadening calculations for STEM-EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steve and Henk,

I am one of the author of some of the program mentioned and I want to add a
warning. All MC programs mentioned does not take into account the crystal
structure of the sample, they consider the sample amorphous. So you will
get the beam broadening without channeling effect (or orientation effect).
For more information, we published a paper on the lateral resolution in
STEM mode with CASINO v3 in amorphous sample:
Demers, H.; Ramachandra, R.; Drouin, D. & de Jonge, N.
The Probe Profile and Lateral Resolution of Scanning Transmission Electron
Microscopy of Thick Specimens
*Microscopy and Microanalysis, **2012**, 18*, 582-590
DOI: 10.1017/S1431927612000232


Regards,
Hendrix

==============================Original Headers==============================
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4, 26 -- Subject: Re: Beam broadening calculations for STEM-EDS
4, 26 -- From: drix {drix00-at-gmail.com}
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From: colijn.1-at-osu.edu
Date: Mon, 15 Jun 2015 09:58:37 -0500
Subject: [Microscopy] Beam broadening calculations for STEM-EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Hendrix,

Good point! ALL the MC programs I mentioned assume an amorphous
sample. I had missed the fact that Steve had included channeling in his
requirements.

I believe that Dave Muller's group at Cornell has taken channeling into
account in their atomic resolution STEM calculations. For non-atomic
resolution work, channeling may safely be neglected in most cases. It
is also likely that beam convergence angle will have a more significant
effect on resolution than channeling. For example, in organic samples
{100nm, Muller's group indicate that the beam convergence has a greater
effect than the beam spreading (Ultra. v.109 p.1 2008).

Cheers,
Henk


On 6/15/2015 10:13 AM, drix00-at-gmail.com wrote:
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi Steve and Henk,
}
} I am one of the author of some of the program mentioned and I want to add a
} warning. All MC programs mentioned does not take into account the crystal
} structure of the sample, they consider the sample amorphous. So you will
} get the beam broadening without channeling effect (or orientation effect).
} For more information, we published a paper on the lateral resolution in
} STEM mode with CASINO v3 in amorphous sample:
} Demers, H.; Ramachandra, R.; Drouin, D. & de Jonge, N.
} The Probe Profile and Lateral Resolution of Scanning Transmission Electron
} Microscopy of Thick Specimens
} *Microscopy and Microanalysis, **2012**, 18*, 582-590
} DOI: 10.1017/S1431927612000232
}
}
} Regards,
} Hendrix
}
} ==============================Original Headers==============================
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} ==============================End of - Headers==============================

--

Hendrik O. Colijn

*C*enter for *E*lectron *M*icroscopy & *A*nalysi*S*

1305 Kinnear Rd, Suite 100, Columbus, OH 43212

colijn.1-at-osu.edu {mailto:colijn.1-at-osu.edu} 614.643.3458 Office

cemas.osu.edu

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."


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From: steven.spurgeon-at-pnnl.gov
Date: Mon, 15 Jun 2015 14:37:45 -0500
Subject: [Microscopy] JEOL STEM-EDS Software Quantification Options

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello everyone,

I’ve been trying to decipher the quantification options for our STEM-EDS analysis program. The program is called “Analysis Station” and its sub-program is “MappingProgram.”

It gives me three options:

* ZAF
* Ratio
* NET Int.

I have figured out what ZAF is, but I’m not sure about the other two. Does anyone know if these routines automatically deconvolute overlapping peaks (judging by the appearance of my maps they do…)? Moreover, does anyone happen to have a manual that describes what the various options are for each routine?

Thanks!
______________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate

Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999 MSIN:K8-87
Richland, WA 99352

Tel: +1-509-371-7123
steven.spurgeon-at-pnnl.gov
www.stevenspurgeon.com {http://www.stevenspurgeon.com/}
www.pnnl.gov {http://www.pnnl.gov/}


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9, 26 -- Subject: JEOL STEM-EDS Software Quantification Options
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From: microwink-at-gmail.com
Date: Mon, 15 Jun 2015 15:27:58 -0500
Subject: [Microscopy] Re: JEOL STEM-EDS Software Quantification Options

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steve,

The JEOL EDS software works on both SEMs and TEMs and the three
different quantification methods are tailored to those two different
microscopy techniques. In short, the quantification routines are used
to compute the k-factors for quantitative analysis. The ZAF routine is
a method to compute matrix corrections for the effects of atomic
number, likelihood of absorption, and characteristic fluorescence of
emitted x-rays from your sample, and these corrections are generally
only valid when you have the classic teardrop interaction volume (i.e.
bulk samples). So this would be a good routine to correct maps
acquired via SEM.

The ratio technique is the appropriate technique for maps acquired via
TEM as TEM samples are typically much too thin for the emitted x-rays
to be influenced in any statistically significant manner by Z, A, or F
(you might still need to worry about channeling effects induced by
sample orientation, however). This routine uses precomputed k-factors
or experimentally calculated k-factors as anchor points from which the
quantitative composition of your sample is derived, as the ratio of
peak intensities from a known material and an unknown material is
directly related to the k-factor. Selecting the ratio routine fills in
the peak intensity of a known material and the k-factor, allowing the
software to calculate the concentration from the measured peak
intensities of your unknown sample. Obviously your results will be
much more quantitative should you experimentally calculate k-factors
for the elements of interest (and under identical illumination
conditions) than by using the software database.

X-from the JEOL EDS software manual regarding the net intensity routine:

"The net intensity map displays relative intensities after
deconvolution and back-ground subtraction. The result of the net
intensity map is different between with check in the “100%” and
without.
Check “100%” Concentration before correcting by Quant. Method
displays. The summation of K-ratios for all elements is unified at
each pixel.
Uncheck “100%” Normalize the maximum net intensity to 255 in the all
pixel of the element."

Practically speaking, you'll want to be exceedingly careful generating
quantitative EDS data without first experimentally generating
appropriate k-factors. Without doing so, your quantitative numbers are
going to be ballpark estimates for anything but the simplest samples.
Such data might not be trustworthy by itself but it can be useful as a
comparison between EDS data from different unknowns acquired under
similar conditions. Masashi Watanabe and David Williams discuss the
problems associated with acquisition of quantitative EDS data and an
alternative to using k-factors in a series of papers (see M.
Watanabe's website at Lehigh) and in the second edition of the classic
Williams and Carter intro to TEM text.

Good luck,
Chris

On Mon, Jun 15, 2015 at 3:47 PM, {steven.spurgeon-at-pnnl.gov} wrote:
}
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} Hello everyone,
}
} I’ve been trying to decipher the quantification options for our STEM-EDS analysis program. The program is called “Analysis Station” and its sub-program is “MappingProgram.”
}
} It gives me three options:
}
} * ZAF
} * Ratio
} * NET Int.
}
} I have figured out what ZAF is, but I’m not sure about the other two. Does anyone know if these routines automatically deconvolute overlapping peaks (judging by the appearance of my maps they do…)? Moreover, does anyone happen to have a manual that describes what the various options are for each routine?
}
} Thanks!
} ______________________________________
} Steven R. Spurgeon, Ph.D.
} Postdoctoral Research Associate
} Fundamental and Computational Sciences Directorate
}
} Pacific Northwest National Laboratory
} 902 Battelle Boulevard
} P.O. Box 999 MSIN:K8-87
} Richland, WA 99352
}
} Tel: +1-509-371-7123
} steven.spurgeon-at-pnnl.gov
} www.stevenspurgeon.com {http://www.stevenspurgeon.com/}
} www.pnnl.gov {http://www.pnnl.gov/}
}
}
} ==============================Original Headers==============================
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} 9, 26 -- To: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
} 9, 26 -- Subject: JEOL STEM-EDS Software Quantification Options
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 15 Jun 2015 18:46:15 -0500
Subject: [Microscopy] viaWWW:Job Opportunity at Bruker Nano

Contents Retrieved from Microscopy Listserver Archives
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X-from: don.becker-at-bruker.com

This Question/Comment was submitted to the Microscopy Listserver
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Email: don.becker-at-bruker.com
Name: Don Becker

Organization: Bruker Nano

Title-Subject: [Filtered] Job Opportunity at Bruker Nano

Message: Bruker Nano Analytics currently has an opening for a Sales Channel Manager for Latin
America. The successful candidate will act a liaison between OEM channel partners and BNA,
supporting OEM partners in sales of EMA (Electron Microscope Analyzers) products including EDS,
EBSD, WDS, and Micro XRF. The Sales Channel Manager will also Establish and maintain sales channels
for XMA (X-Ray Micro Analysis) products including Micro-XRF and TXRF. For more information please
see the complete listing on our web site:

https://englishcareers-bruker.icims.com/jobs/2880/sales-channel-manager-latin-america/job

Thanks,

Don




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From: microscopy.gmb-at-gmail.com
Date: Mon, Jun 15, 2015 at 8:25 AM
Subject: [Microscopy] Re: measurements: It's how small? or more

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Frank,

On a related point, inaccuracy of standardless "quantitative" EDS
analyses can lead to substantial errors. An approach by Dale Newbury
(Joseph Goldstein, Dale E. Newbury, David C. Joy, Charles E. Lyman,
Patrick Echlin, Eric Lifshin, Linda Sawyer, J.R. Michael, Scanning
Electron Microscopy and X-ray Microanalysis: Third Ed., Springer,
2012, 355) is that numerical values for concentration of such analyses
are reported as a range. Specifically, the concentration of an
element is represented by one of three categories: Major: } 10 wt%;
Minor: 1-10 wt%; and Trace: { 1 wt%.

The lab I retired from used this approach to give our customers some
sense of the prevalence of an element in a qualitative analysis.
After acquiring a qualitative EDS spectrum, we ran a quick
standardless quantitative analysis and reported the "concentrations"
as major, minor or trace, as described above. Furthermore, we did not
divulge to our customers the concentration ranges that the three
categories represented. This solved several problems, one of which
was that we did not provide our internal customer a potentially
worthless number that could be used as the final word on concentration
of the element in the sample. My apologies to Dale for any
misstatements.

All the best,

Gary Brown
Polymer Microscopy Consultant



---------- Forwarded message ----------
X-from: {zaluzec-at-aaem.amc.anl.gov}

Frank

I would contend, that you are asking the wrong question. The subject
should be accuracy and precision of a measurement.

It is not how many digits you report after a measurement, but
more importantly, reporting of the standard error with any measurement
be it dimension, composition or whatever. Both accuracy and precision.
Without an measurement error estimate then the number of digits is irrelevant.

My 2 cents.

Nestor
Your Friendly Neighborhood SysOp


BTW, I chuckle at seeing measurements reported more than 3 significant figures
and no error bars.


On Jun 15, 2015, at 7:12 AM CDT, {frank_karl-at-ardl.com}
{frank_karl-at-ardl.com} wrote:

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} Monday, the start of another workweek but I thought I'd ask a question of the collective wisdom.
}
} How many decimal points do you report or believe when making measurements with:
}
} SEM?
} TEM?
} LM?
}
} Do you report numbers suggesting you can measure to one thousandth of a nanometer? How about a hundredth of a micron or micrometer? What about EDS analysis? On a non-flat, non-homogeneous sample can you actually measure to a tenth of 1 wt%? How about hundredth?
}
}
} Will I get a lot of Out-of-Office responses and do I believe them?
}
} Questions on Monday morning to start the gray matter working.\
}
} Stay safe................
} Frank
}
}
}
} This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.
}
}
}
} ==============================Original Headers==============================
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===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
NanoScience and Technology Division
9700 S. Cass Ave
Bldg 212 / A-143
Argonne, Illinois 60439 USA
Email: Zaluzec-at-aaem.amc.anl.gov


Tel: 530-NES-TORZ (530-637-8679) has Voice Mail
Lab: 630-252-7901
Fax: 630-252-4798

iChat: Zaluzec-at-AIM.com
Skype: Zaluzec
Polycom: 146.139.72.119
TPM: http://tpm.amc.anl.gov


Senior Scientist - Argonne National Laboratory
Fellow of the Microscopy Society of America
Senior Fellow the Computational Institute - University of Chicago
E.P. Wigner Fellow - Oak Ridge National Laboratory
Past President Microscopy Society of America
Adjunct Professor of Physics - Northern Illinois University &
the University of Illinois at Chicago
Visiting Professor of Microscopy - Manchester University

===========================================
TPMLab: http://tpm.amc.anl.gov
MMSite: http://www.amc.anl.gov
===========================================

The box said ...
"This program requires Win 95/98/NT or better..."
So I bought a Mac !

===========================================
LLAP
=========================================+=====



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more importantly what is your accuracy and precision....
22, 38 -- From: "Nestor J. Zaluzec - ANL/GAccnt" {zaluzec-at-aaem.amc.anl.gov}
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--

"An expert is a person who has made all the mistakes which can be made
in a very narrow field.” and "Prediction is very difficult, especially
if it's about the future." Niels Bohr


==============================Original Headers==============================
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40, 32 -- Subject: Fwd: [Microscopy] Re: measurements: It's how small? or more
40, 32 -- importantly what is your accuracy and precision....
40, 32 -- From: Gary Brown {microscopy.gmb-at-gmail.com}
40, 32 -- To: Listserver {Microscopy-at-microscopy.com} , Frank Karl {frank_karl-at-ardl.com}
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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 16 Jun 2015 22:12:43 -0500
Subject: [Microscopy] viaWWW:Microwave processor

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Gary,
I completely concur with your statements below and I think Dale would
agree also.

I would only add that NIST is somewhere in the middle of another
evaluation of standardless EDS. But 15 years later, the preliminary
results *do not* look any more promising than you noted yourself. I
posted Dale's slide summarizing these more recent (2011) examples here:

http://probesoftware.com/smf/index.php?topic=302.msg2890#msg2890

I would love to see more from NIST on this subject. And just to stir
the pot a bit more here's a totally crazy idea for improving EDS:

http://probesoftware.com/smf/index.php?topic=302.msg1530#msg1530

!
john

On 6/15/2015 6:02 PM, microscopy.gmb-at-gmail.com wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Frank,
}
} On a related point, inaccuracy of standardless "quantitative" EDS
} analyses can lead to substantial errors. An approach by Dale Newbury
} (Joseph Goldstein, Dale E. Newbury, David C. Joy, Charles E. Lyman,
} Patrick Echlin, Eric Lifshin, Linda Sawyer, J.R. Michael, Scanning
} Electron Microscopy and X-ray Microanalysis: Third Ed., Springer,
} 2012, 355) is that numerical values for concentration of such analyses
} are reported as a range. Specifically, the concentration of an
} element is represented by one of three categories: Major: } 10 wt%;
} Minor: 1-10 wt%; and Trace: { 1 wt%.
}
} The lab I retired from used this approach to give our customers some
} sense of the prevalence of an element in a qualitative analysis.
} After acquiring a qualitative EDS spectrum, we ran a quick
} standardless quantitative analysis and reported the "concentrations"
} as major, minor or trace, as described above. Furthermore, we did not
} divulge to our customers the concentration ranges that the three
} categories represented. This solved several problems, one of which
} was that we did not provide our internal customer a potentially
} worthless number that could be used as the final word on concentration
} of the element in the sample. My apologies to Dale for any
} misstatements.
}
} All the best,
}
} Gary Brown
} Polymer Microscopy Consultant
}
}
}
} ---------- Forwarded message ----------
} X-from: {zaluzec-at-aaem.amc.anl.gov}
} Date: Mon, Jun 15, 2015 at 8:25 AM
} Subject: [Microscopy] Re: measurements: It's how small? or more
} importantly what is your accuracy and precision....
} To: microscopy.gmb-at-gmail.com
}
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Frank
}
} I would contend, that you are asking the wrong question. The subject
} should be accuracy and precision of a measurement.
}
} It is not how many digits you report after a measurement, but
} more importantly, reporting of the standard error with any measurement
} be it dimension, composition or whatever. Both accuracy and precision.
} Without an measurement error estimate then the number of digits is irrelevant.
}
} My 2 cents.
}
} Nestor
} Your Friendly Neighborhood SysOp
}
}
} BTW, I chuckle at seeing measurements reported more than 3 significant figures
} and no error bars.
}
}
} On Jun 15, 2015, at 7:12 AM CDT, {frank_karl-at-ardl.com}
} {frank_karl-at-ardl.com} wrote:
}
} }
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} } ----------------------------------------------------------------------------
} }
} } Monday, the start of another workweek but I thought I'd ask a question of the collective wisdom.
} }
} } How many decimal points do you report or believe when making measurements with:
} }
} } SEM?
} } TEM?
} } LM?
} }
} } Do you report numbers suggesting you can measure to one thousandth of a nanometer? How about a hundredth of a micron or micrometer? What about EDS analysis? On a non-flat, non-homogeneous sample can you actually measure to a tenth of 1 wt%? How about hundredth?
} }
} }
} } Will I get a lot of Out-of-Office responses and do I believe them?
} }
} } Questions on Monday morning to start the gray matter working.\
} }
} } Stay safe................
} } Frank
} }
} }
} }
} } This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.
} }
} }
} }
} } ==============================Original Headers==============================
} } 13, 28 -- From frank_karl-at-ardl.com Mon Jun 15 07:12:32 2015
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} } 13, 28 -- To: "Microscopy Listserver (microscopy-at-microscopy.com)"
} } 13, 28 -- {microscopy-at-microscopy.com}
} } 13, 28 -- Date: Mon, 15 Jun 2015 08:12:09 -0400
} } 13, 28 -- Subject: meassurements: It's how small?
} } 13, 28 -- Thread-Topic: meassurements: It's how small?
} } 13, 28 -- Thread-Index: AdCnZID1Qkvf8eMpRwutUMpq1aZTdQ==
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} } ==============================End of - Headers==============================
} ===========================================
} Dr. Nestor J. Zaluzec
} Argonne National Laboratory
} Electron Microscopy Center
} NanoScience and Technology Division
} 9700 S. Cass Ave
} Bldg 212 / A-143
} Argonne, Illinois 60439 USA
} Email: Zaluzec-at-aaem.amc.anl.gov
}
}
} Tel: 530-NES-TORZ (530-637-8679) has Voice Mail
} Lab: 630-252-7901
} Fax: 630-252-4798
}
} iChat: Zaluzec-at-AIM.com
} Skype: Zaluzec
} Polycom: 146.139.72.119
} TPM: http://tpm.amc.anl.gov
}
}
} Senior Scientist - Argonne National Laboratory
} Fellow of the Microscopy Society of America
} Senior Fellow the Computational Institute - University of Chicago
} E.P. Wigner Fellow - Oak Ridge National Laboratory
} Past President Microscopy Society of America
} Adjunct Professor of Physics - Northern Illinois University &
} the University of Illinois at Chicago
} Visiting Professor of Microscopy - Manchester University
}
} ===========================================
} TPMLab: http://tpm.amc.anl.gov
} MMSite: http://www.amc.anl.gov
} ===========================================
}
} The box said ...
} "This program requires Win 95/98/NT or better..."
} So I bought a Mac !
}
} ===========================================
} LLAP
} =========================================+=====
}
}
}
} ==============================Original Headers==============================
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} more importantly what is your accuracy and precision....
} 22, 38 -- From: "Nestor J. Zaluzec - ANL/GAccnt" {zaluzec-at-aaem.amc.anl.gov}
} 22, 38 -- In-Reply-To: {201506151212.t5FCCY5o025941-at-ns.microscopy.com}
} 22, 38 -- Date: Mon, 15 Jun 2015 08:09:20 -0500
} 22, 38 -- Cc: "Zaluzec-ANL Nestor J." {zaluzec-at-aaem.amc.anl.gov}
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Email: smodla-at-udel.edu
Name: Shannon Modla

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Title-Subject: [Filtered] Microwave processor

Message: We recently acquired a Pelco BioWave Microwave processor and a Pelco SteadyTemp.
Unfortunately, the unit did not come with the connectors or tubing needed to connect the SteadyTemp
to the microwave processor. Looking at the back of the SteadyTemp, there are two threaded ports.
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From: eric-miller-at-northwestern.edu
Date: Wed, 17 Jun 2015 17:06:44 -0500
Subject: [Microscopy] High Dynamic Range Images for EM?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Don't forget the deadline for early registration for the 2015 Microscopy and Microanalysis meetings in Portland is next week (June 22).

There is still space for a few more student bursaries* to help with meeting activities such as provide support in the different symposia, staff the volunteer office, monitor use of the Internet Café, and help with vendor tutorial sign-up. MSA's student bursary program is designed to encourage students to attend the meetings by helping to defray some of the costs and giving them an opportunity to meet and interact with the established microscopy community.

Bursaries will earn $10/hour for assisting with any of the tasks mentioned above (paid by check at the end of the meetings). There is an added bonus of a meeting shirt and $10 cash for each morning and/or afternoon session worked to help with meals. Applicants for the bursaries must be members of MSA or MAS, enrolled as students at a recognized educational institution, and have paid their registration fee.

*For those 'non-students' volunteers are also needed to help with these same meeting activities. Although not paid on an hourly basis as the student bursaries, they do receive a meeting shirt and the same cash allotment to help with meals. Volunteers also have the opportunity to interact more with the microscopy community as they assist with meeting tasks.

We can't do it without help from you, so please consider serving as a student bursary or volunteer. If anyone has any questions about the bursary/volunteer program, and/or would like to participate, please contact me.

Thanks and see you in Portland!
Amanda

Amanda Lawrence
Institute for Imaging and Analytical Technologies
Mississippi State University
Box 9775
Mississippi State, MS 39762












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From mike.sfsd4f564s6df45dspc-at-gmail.com Wed Jun 17 10:00:54 2015
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Hey I was wondering if anyone has ever come up with a good repeatable technique for making high dynamic range (HDR) images using SEM or TEM micrographs. I think this could be a useful technique to use on low contrast samples and just to make a cool image. But I can't seem to get it to work on my own. Just wondering if anyone else ever has. Thanks.



ERiC Jay Miller
Microscopy & Imaging Specialist
Electron Probe Instrumentation Center

Northwestern University
Mail: 2036 Cook Hall
Office: 1152 Cook Hall
2220 Campus Drive
Evanston, IL 60208-3108

ph: (847) 467-0789

http://www.nuance.northwestern.edu



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From: oshel1pe-at-cmich.edu
Date: Thu, 18 Jun 2015 07:08:29 -0500
Subject: [Microscopy] Re: High Dynamic Range Images for EM?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Eric,

Try a Y-modulation scan in the SEM (or SEM mode of a STEM). Basically a
line-profile aka Y-scan that is scanned down an image. Ends up looking
line a bas relief. The more scan lines, the finer the image.
The advantage is that since contrast is in the "Y" direction on the
monitor - the line profile - one can often crank the contrast more than
with a normal XY scan. Just watch for peak clipping indicating saturation.
(This is an old method, dating to at least 1969. Maybe older. But oddly
enough, this is difficult to do with some modern SEMs' software.)

Phil

} Hey I was wondering if anyone has ever come up with a good repeatable technique for making high dynamic range (HDR) images using SEM or TEM micrographs. I think this could be a useful technique to use on low contrast samples and just to make a cool image. But I can't seem to get it to work on my own. Just wondering if anyone else ever has. Thanks.
}
}
}
} ERiC Jay Miller
} Microscopy& Imaging Specialist
} Electron Probe Instrumentation Center
}
} Northwestern University
} Mail: 2036 Cook Hall
} Office: 1152 Cook Hall
} 2220 Campus Drive
} Evanston, IL 60208-3108
}
} ph: (847) 467-0789
}
} http://www.nuance.northwestern.edu
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: les-at-zsgenetics.com
Date: Thu, 18 Jun 2015 07:46:32 -0500
Subject: [Microscopy] High Dynamic Range Images for EM?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi,
There are two issues, it seems: pixel depth and look-up table. I was a
little confused by your statement of low contrast images, for HDR is usually
used for high contrast images, where some places are saturated and/or some
are lost in the black. That issue beside, with an 8-bit detector signal, one
could take two images - at lower and higher gain - and then map the two onto
a single 16 or 32 bit image. Then the gray levels need to be compressed into
a non-linear scale that allows the wide range to show in a human-detectable
fashion. A method used in astronomy is the wavelet-log representation, for
example, where the pixel values are converted to a log scale. This allows
many orders of magnitude of signal to be represented in a nice way visually.
See Starck and Bobin, Astronomical Data Analysis, 2009, Equation (2). Of
course, you must start with a high bit-depth image.
I wrote an ImageJ macro that does such a wavelet transform, and my meager
testing found it to be good for bringing out faint details in 32-bit STEM
images. Low contrast images don't look good, for they get compressed into
too few gray levels. I would be glad to send it to you offline, as the
listserver doesn't digest attachments.
Regards,
Larry Scipioni
ZS Genetics


-----Original Message-----
X-from: eric-miller-at-northwestern.edu [mailto:eric-miller-at-northwestern.edu]
Sent: Wednesday, June 17, 2015 6:23 PM
To: LES-at-ZSGENETICS.COM

Hey I was wondering if anyone has ever come up with a good repeatable
technique for making high dynamic range (HDR) images using SEM or TEM
micrographs. I think this could be a useful technique to use on low contrast
samples and just to make a cool image. But I can't seem to get it to work on
my own. Just wondering if anyone else ever has. Thanks.



ERiC Jay Miller
Microscopy & Imaging Specialist
Electron Probe Instrumentation Center

Northwestern University
Mail: 2036 Cook Hall
Office: 1152 Cook Hall
2220 Campus Drive
Evanston, IL 60208-3108

ph: (847) 467-0789

http://www.nuance.northwestern.edu



==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 18 Jun 2015 08:01:28 -0500
Subject: [Microscopy] viaWWW:Post Doc Opening: AEM of Semiconductor Heterostructures &

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Message:

A Postdoctoral Research Associate position has been posted within the Center for Nanophase Materials
Sciences at Oak Ridge National Laboratory. Please visit

http://www.cnms.ornl.gov/careers.shtm

and view the Analyt. Electron Microscopy of Semiconductor Heterostructures & Interfaces/NB5049429
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 18 Jun 2015 08:01:36 -0500
Subject: [Microscopy] viaWWW:Re: Microwave processor

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Message: I would advise that you contact Ted Pella, their number is on their website,
www.tedpella.com, and let their customer service know what happened. I am sure they can direct you
to the correct hoses and fitting for your units.
We just ordered another complete Pella Microwave system and enjoy their products immensely.

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From: eschumacher-at-mccrone.com
Date: Thu, 18 Jun 2015 08:37:51 -0500
Subject: [Microscopy] Job Opportunity: Electron Optics

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Greetings all,

(Posting on behalf of McCrone Associates. Please follow the links below for additional information or to respond. Thank you. Elaine)

Senior Research Scientist - Electron Optics

McCrone Associates, Inc., (https://www.mccrone.com/materials-analysis) seeks a highly-motivated research scientist with a background in electron microscopy to join the consulting staff of our electron optics group. The group is primarily responsible for electron microprobe analysis, scanning and transmission electron microscopy, and x-ray microanalysis. Candidate would work autonomously with clients from a variety of industries helping to solve their materials and contamination problems through modern microscopy and microanalysis.

The ideal candidate will have expertise and experience in scanning electron microscopy (SEM) and energy-dispersive x-ray spectrometry (EDS). The applicant must have experience actually operating SEM-EDS equipment for imaging, qualitative, and quantitative analysis. Knowledge of wavelength dispersive x-ray spectrometry (WDS), and other characterization techniques such as Raman, SIMS, XRD, or XPS, is a plus.

If you are an electron microscopist and looking for an interesting career opportunity in materials analysis, in a modern and innovative laboratory, e-mail your résumé with a letter describing your experience and interests to
careers-at-mccrone.com.

*Candidate must be a US citizen and eligible to obtain a government security clearance.*



Elaine F. Schumacher | Senior Research Scientist
McCrone Associates, Inc. . 850 Pasquinelli Drive . Westmont, IL 60559
P. 630.887.7100 | F. 630.887.7417 | www.mccrone.com
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From: contact-at-integrityscientific.com
Date: Thu, 18 Jun 2015 09:12:07 -0500
Subject: [Microscopy] Re: High Dynamic Range Images for EM?

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Dear Eric,
we did this for TEM some time ago and finally got round to
publishing a little letter on it last year: see Microscopy and
Microanalysis 20 1601-4 (2014), DOI: 10.1017/S1431927614012975.
Also at
https://www.researchgate.net/publication/266246078_High_dynamic_range_electron_imaging_the_new_standard.
You should be able to find the Digital Micrograph script there too,
under supplementary resources.

It doesn't help with low contrast samples, but it does help with very
high contrast data (e.g. diffraction patterns). For low contrast
samples it would be better to use a phase plate ($$$) or a through-focal
series to produce an exit wave reconstruction (or in-line holography,
however you want to label it).

Best regards

Richard


On 17/06/2015 23:15, eric-miller-at-northwestern.edu wrote:
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} Hey I was wondering if anyone has ever come up with a good repeatable technique for making high dynamic range (HDR) images using SEM or TEM micrographs. I think this could be a useful technique to use on low contrast samples and just to make a cool image. But I can't seem to get it to work on my own. Just wondering if anyone else ever has. Thanks.
}
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}
} ERiC Jay Miller
} Microscopy & Imaging Specialist
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} 9, 49 -- Subject: High Dynamic Range Images for EM?
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--
Richard Beanland

Director,
Integrity Scientific Ltd.


==============================Original Headers==============================
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From: drix00-at-gmail.com
Date: Thu, 18 Jun 2015 11:15:07 -0500
Subject: [Microscopy] Discussion meeting on open source software for quantitative

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thank you all for the suggestions. I confused myself and misspoke when I said low contrast images. Usually when you have an image with very bright or very dark areas in it, you'll need TO TAKE a very low contrast image to make all of the data visible.
I just think this is an interesting technique for data as well as artistic reasons that should be able to be applied to EM. Just haven't found an easy way of making it happen yet.

-----Original Message-----
X-from: Richard Beanland [mailto:contact-at-integrityscientific.com]
Sent: Thursday, June 18, 2015 9:12 AM
To: Eric Jay Miller; microscopy-at-microscopy.com

Dear colleagues,

We would like to invite you to a 2nd discussion meeting on open source
software for quantitative microanalysis on Tuesday August 4th, 2015
after the second day of the MM2015 conference in Portland, Oregon.

It goes without saying that the microanalysis community heavily
depends on software. Quantification software, simulation programs, and
physical quantities databases are essential tools for today's
microanalysts. Broadly speaking, these software can be classified into
four categories: commercial (sold by instrumentation's manufacturers
or third-party companies), personal/research group internal or not
openly distributed (XFILM, PENELOPE), free to download and use
(WinCasino, CalcZAF) and open source (DTSA-II, pyPENELOPE). Without a
doubt all types of software play an important role in the community,
but we strongly believe that only open source software can foster
innovation while offering the same level of validation and
transparency as peer-reviewed scientific work. Although closed source
software may be based on published equations, they remain black boxes
as other equations are sometimes used in running codes. Alternate
implementations, further optimization or special cases are not shared
with the users. Most importantly, commercial, private and free
software are a barrier to innovate as they force scientists, who would
like to improve or develop new algorithms, to start from scratch.

We would therefore propose to start a community-driven open source
project to centralize physical quantity databases and algorithms used
for quantification. The goal is to encourage collaborative work and
provide the necessary building blocks for new projects in
microanalysis. For more information, you can visit our website
openmicroanalysis.org and discussion forum
https://groups.google.com/forum/#!forum/openmicroanalysis, where the
slides of the 1st meeting held at EMAS2015 are available.

The meeting will take place on:
Tuesday August 4th, 2015 at 4:00 to 5:00 PM in room B118 in Oregon
Convention Center.

You can gladly forward this invitation to other colleagues that may be
interested in joining the discussion.

Best regards,
Hendrix, Raynald, Philippe and Silvia

--
-----------------------------------------------------------
Hendrix Demers
Research Associate
---------------
Department of Mining and Materials Engineering
Room 1250 Wong Building
3610 University Street
Montreal QC H3A 0C5
Tel: 514-398-4755 ext.0225
Mobile: 514-927-6186
email: hendrix.demers-at-mail.mcgill.ca
-----------------------------------------------------------

==============================Original Headers==============================
8, 27 -- From drix00-at-gmail.com Thu Jun 18 11:15:06 2015
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8, 27 -- Message-ID: {CAO806QS30gSMw3Ap=aHQjeRT0Zb00HOSsEmKDvHtCKdEiAKLEQ-at-mail.gmail.com}
8, 27 -- Subject: Discussion meeting on open source software for quantitative
8, 27 -- microanalysis at MM2015
8, 27 -- From: drix {drix00-at-gmail.com}
8, 27 -- To: Microscopy-at-microscopy.com
8, 27 -- Content-Type: text/plain; charset=UTF-8
==============================End of - Headers==============================




From: drix00-at-gmail.com
Date: Thu, 18 Jun 2015 13:56:30 -0500
Subject: [Microscopy] Re: Discussion meeting on open source software for quantitative

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Nestor,

Thanks for the suggestion. Do you have a link to the description of
the MSA Standards Committee? I check the MSA website and did not find
anything.

Regards,
Hendrix

On Thu, Jun 18, 2015 at 12:40 PM, Nestor Zaluzec - ANL
{zaluzec-at-aaem.amc.anl.gov} wrote:
}
} Raynald etal
}
} An alternate venue for this might be via the MSA Standards Committee.
} which meets during MM2015. That committee has members from MSA, MAS and
} also AMAS.
}
} Nestor
} Chair of the MSA Standards Committee
}
}
}
}
} On Thursday, June 18, 2015, {drix00-at-gmail.com} wrote:
} }
} }
} }
} }
} }
} } ----------------------------------------------------------------------------
} } The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} } To Subscribe/Unsubscribe --
} } http://www.microscopy.com/MicroscopyListserver
} } On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} }
} } ----------------------------------------------------------------------------
} }
} } Dear colleagues,
} }
} } We would like to invite you to a 2nd discussion meeting on open source
} } software for quantitative microanalysis on Tuesday August 4th, 2015
} } after the second day of the MM2015 conference in Portland, Oregon.
} }
} } It goes without saying that the microanalysis community heavily
} } depends on software. Quantification software, simulation programs, and
} } physical quantities databases are essential tools for today's
} } microanalysts. Broadly speaking, these software can be classified into
} } four categories: commercial (sold by instrumentation's manufacturers
} } or third-party companies), personal/research group internal or not
} } openly distributed (XFILM, PENELOPE), free to download and use
} } (WinCasino, CalcZAF) and open source (DTSA-II, pyPENELOPE). Without a
} } doubt all types of software play an important role in the community,
} } but we strongly believe that only open source software can foster
} } innovation while offering the same level of validation and
} } transparency as peer-reviewed scientific work. Although closed source
} } software may be based on published equations, they remain black boxes
} } as other equations are sometimes used in running codes. Alternate
} } implementations, further optimization or special cases are not shared
} } with the users. Most importantly, commercial, private and free
} } software are a barrier to innovate as they force scientists, who would
} } like to improve or develop new algorithms, to start from scratch.
} }
} } We would therefore propose to start a community-driven open source
} } project to centralize physical quantity databases and algorithms used
} } for quantification. The goal is to encourage collaborative work and
} } provide the necessary building blocks for new projects in
} } microanalysis. For more information, you can visit our website
} } openmicroanalysis.org and discussion forum
} } https://groups.google.com/forum/#!forum/openmicroanalysis, where the
} } slides of the 1st meeting held at EMAS2015 are available.
} }
} } The meeting will take place on:
} } Tuesday August 4th, 2015 at 4:00 to 5:00 PM in room B118 in Oregon
} } Convention Center.
} }
} } You can gladly forward this invitation to other colleagues that may be
} } interested in joining the discussion.
} }
} } Best regards,
} } Hendrix, Raynald, Philippe and Silvia
} }
} } --
} } -----------------------------------------------------------
} } Hendrix Demers
} } Research Associate
} } ---------------
} } Department of Mining and Materials Engineering
} } Room 1250 Wong Building
} } 3610 University Street
} } Montreal QC H3A 0C5
} } Tel: 514-398-4755 ext.0225
} } Mobile: 514-927-6186
} } email: hendrix.demers-at-mail.mcgill.ca
} } -----------------------------------------------------------
} }
} } ==============================Original
} } Headers==============================
} } 8, 27 -- From drix00-at-gmail.com Thu Jun 18 11:15:06 2015
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} } -0700 (PDT)
} } 8, 27 -- Date: Thu, 18 Jun 2015 12:15:04 -0400
} } 8, 27 -- Message-ID:
} } {CAO806QS30gSMw3Ap=aHQjeRT0Zb00HOSsEmKDvHtCKdEiAKLEQ-at-mail.gmail.com}
} } 8, 27 -- Subject: Discussion meeting on open source software for
} } quantitative
} } 8, 27 -- microanalysis at MM2015
} } 8, 27 -- From: drix {drix00-at-gmail.com}
} } 8, 27 -- To: Microscopy-at-microscopy.com
} } 8, 27 -- Content-Type: text/plain; charset=UTF-8
} } ==============================End of -
} } Headers==============================
}
}
}
} --
} ---===[|]===---
} ===========================================
}
} Dr. Nestor J. Zaluzec
} Argonne National Laboratory
} Electron Microscopy Center
} NanoScience and Technology Division
} Bldg 212 / A-143
} 9700 S. Cass Ave
} Argonne, Illinois 60439 USA
}
} Tel: 530-NES-TORZ (530-637-8679) has Voice Mail
} Lab: 630-252-7901
}
} Email: Zaluzec-at-aaem.amc.anl.gov
}
} iChat: Zaluzec-at-AIM.com
} Skype: Zaluzec
} Polycom: 146.139.72.119
} TPM: http://tpm.amc.anl.gov
}
}
}
} Senior Scientist - Argonne National Laboratory
} Fellow of the Microscopy Society of America
} Senior Fellow the Computational Institute - University of Chicago
} E.P. Wigner Fellow - Oak Ridge National Laboratory
} Past President Microscopy Society of America
} Adjunct Professor of Physics - Northern Illinois University &
} the University of Illinois at Chicago
} Visiting Professor of Microscopy - Manchester University
}
} ===========================================
} TPMLab: http://tpm.amc.anl.gov
} MMSite: http://www.amc.anl.gov
} ===========================================
}
} The box said ...
} "This program requires Win 95/98/NT or better..."
} So I bought a Mac !
}
} ===========================================
} ---===[|]===---
}

==============================Original Headers==============================
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4, 30 -- Message-ID: {CAO806QTJKko_m9oqVu1=RmFs6PRMLjo=7YdZ1BunhToEk-kTSA-at-mail.gmail.com}
4, 30 -- Subject: Re: [Microscopy] Discussion meeting on open source software for quantitative
4, 30 -- From: drix {drix00-at-gmail.com}
4, 30 -- To: Microscopy-at-microscopy.com
4, 30 -- Content-Type: text/plain; charset=UTF-8
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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 18 Jun 2015 18:10:16 -0500
Subject: [Microscopy] viaWWW:Embedding resins

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Email: microscopy.gmb-at-gmail.com
Name: Gary Brown

Organization: Independent consultant

Title-Subject: [Filtered] Embedding resins

Message: I use one of two resins for embedding the catalyst samples and polymer samples we encounter
in the advanced characterization lab of the major petrochemical corporation (from which I retired
last year after 33 years in polymer microscopy).

Porous samples that are inorganic or high melting organic materials typically are vacuum infiltrated
and embedded in LR White resin (hard grade without accelerator) in flat embedding molds of high
density polyethylene (conventional BEEM capsules can also be used; silicone rubber molds should be
avoided because the silicone can be swelled by the LR White), and cured at 70-80C overnight. This
approach produces very hard, brittle blocks that cut exceptionally well. LR White with accelerator
is not used in our lab to embed polymer samples because LR White can interact with the sample before
polymer is complete. Important note: LR White containing no accelerator can be exposed to oxygen
without curing problems.

Polymer samples (films, fabrics, fibers, etc.) are embedded at room temperature or 50C in EpoFix
epoxy resin with accelerator (25:3 wt/wt resin:accelerator) according to the manufacturer's
directions. (EpoFix is available from Electron Microscopy Sciences although Ted Pella and others
may sell a similar resin.) It is important to note that the resin-accelerator mixture cures in
about 90 minutes but phase separates upon standing during the initial 45 minutes or so of curing.
To prevent this, the mixture must be manually stirred using a stirring rod, wooden splint, or
equivalent for at least two minutes (timed) and continued stirring using a magnetic stir bar/stir
plate until the resin-accelerator mixture is stable after 45 to 60 minutes curing; about 60 to 90
minutes, the viscosity of the curing resin gradually increases beyond a useable point. The
resin-accelerator mixture may be cured at 50C for several hours or at ambient temperature overnight.
Blocks cured at ambient temperature may be a little soft after curing overnight; an additional day
or more of curing improves cutting performance. Heat curing is preferred if the sample can tolerate
50C temperature without annealing or melting. For example, high density polyethylenes and
polypropylenes (melting temperatures ~130C and 155-160C, respectively) were cured at 50C but softer,
lower density polyethylenes and elastomers containing low melting fractions that melt just above
ambient temperatures and up to 60C are cured at ambient temperature.


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From: steven.spurgeon-at-pnnl.gov
Date: Fri, 19 Jun 2015 14:21:41 -0500
Subject: [Microscopy] Simulating STEM-HAADF of thin film interfaces

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello everyone,

I got a lot of great suggestions for tools to simulate STEM-EDS probe broadening and I’ve been exploring different software packages, including µSTEM and Dr. Probe. However, my challenge is that I am trying to simulate images from thin film interfaces—that is an extended planar boundary between two single crystals.

While many of these programs explain in detail how to build simple single-crystal models for input, I am not sure how to construct a model for an interface to run the multislice calculations on. How does one define the supercell to consider an artificial boundary? I’ve searched through the manuals for these programs but they don’t offer much guidance.

I’d appreciate any thoughts or suggestions. Thanks again!
______________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate

Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999 MSIN:K8-87
Richland, WA 99352

Tel: +1-509-371-7123
steven.spurgeon-at-pnnl.gov
www.stevenspurgeon.com {http://www.stevenspurgeon.com/}
www.pnnl.gov {http://www.pnnl.gov/}


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 19 Jun 2015 17:54:02 -0500
Subject: [Microscopy] =?UTF-8?B?dmlhV1dXOkFkdmFuY2VkIEVFTFMgYW5kIEVGVEVNIFRyYWluaW5nIFM=?=

Contents Retrieved from Microscopy Listserver Archives
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X-from: jhyun-at-gatan.com

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Email: jhyun-at-gatan.com
Name: John Hyun

Organization: Gatan, Inc.

Title-Subject: [Filtered] Advanced EELS and EFTEM Training School GmbH

Message: This is an intensive 4-day training school in JĂźlich that incorporates lectures, computer
laboratories and microscope practical classes to provide participants with comprehensive, hands-on
training on advanced electron energy los spectroscopy (EELS) and energy-filtered TEM (EFTEM) topics.
Practical sessions on the microscope will be given at the Ernst Ruska-Center for Microscopy in
Jülich using a Cs probe corrected FEI Titan equipped with a X-FEG and a fully loaded Enfinium™ ER
and the Cs/Cc corrected Pico microscope equipped with monochromator, a X-FEG and GIF Quantum ERS system.

This course focuses on the advanced practice of EELS imaging and analysis in the (S)TEM microscope
on advanced based EELS techniques. A good experience with electron microscopy and EELS is highly
recommended. By the end of the course, participants can expect to get the best out of their EELS
spectrometer and know how to best optimize the experimental conditions in order to capture the
maximum amount of information out of the TEM samples using EELS.

For more details and online register, please go to:
http://www.gatan.com/company/events/advanced-eels-and-eftem-training-school-gmbh


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From: oshel1pe-at-cmich.edu
Date: Mon, 22 Jun 2015 07:20:05 -0500
Subject: [Microscopy] Ask-a-Microscopist: Which blade for sectioining polyolefins?

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X-from: erwrigh-at-emory.edu

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Email: erwrigh-at-emory.edu
Name: Elizabeth Wright

Organization: Emory University

Title-Subject: [Filtered] Cryo-EM staff position at Emory University

Message: Dear Colleagues,


Cryo-EM Staff Position Available In The Robert P. Apkarian Integrated Electron Microscopy Core At
Emory University


The Robert P. Apkarian Integrated Electron Microscopy Core of Emory University seeks an experienced
cryo-electron microscopist to assist faculty, postdoctoral fellows, and students with cryo-electron
microscopy projects.

FACILITY RESOURCES: The facility is equipped with a JEOL JEM-2200FS 200 kV FEG TEM with an in-column
energy filter, phase plate system, Direct Electron DE-20 direct detection device, and Gatan 4k x 4k
CCD camera; a JEOL JEM-1400 120 kV TEM with Gatan 2k x 2k CCD camera; a Hitachi H-7700 120 kV TEM,
two ISI-TopCon DS FEG-SEMs; a Bal-Tec high pressure freezer; a Leica freeze substitution system; a
Leica cryo-ultramicrotome; and other ancillary equipment.

QUALIFICATIONS: The ideal candidate will have a Ph.D. and postdoctoral experience in a relevant area
of structural biology or biophysics and significant experience in the field of cryo-EM.
Qualifications include experience with electron microscopy related laboratory research, experimental
design of TEM experiments, cryo-EM for the direct-imaging of biological/soft matter. Familiarity
with JEOL microscopes, cryo-EM data collection strategies, and single particle and electron
tomography image processing are preferred. In addition, problem solving skills and a proven ability
to learn and teach in a multidisciplinary environment, strong attention to detail and good
organizational skills are advantageous.

Key responsibilities include, but are not limited to:
1) Negative stain EM and cryo-EM of biological and soft materials specimens;
2) Image analysis and three-dimensional reconstructions of EM data;
3) Operation of electron microscopes (TEM) and cryogenic instrumentation;
4) Image analysis and three-dimensional reconstructions of electron microscopy data;
5) Interpretation and presentation of two-dimensional averages and three-dimensional volume data and
fitting of high-resolution data into electron density maps.

COMPENSATION: Emory University offers competitive compensation and benefits packages covering health
insurance, retirement benefits, and savings programs.

Interested candidates should contact Dr. Elizabeth R. Wright (erwrigh-at-emory.edu) and include a CV,
statement of accomplishments and electron microscopy skills, research interests, and contact
information for three references.

The advertisement will remain open until the position is filled.


Regards,

Liz

--
Elizabeth R. Wright, PhD
Assistant Professor
Emory University
erwrigh-at-emory.edu
(404) 727-4665

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From mike.sfsd4f564s6df45dsnixew-at-gmail.com Sun Jun 21 17:14:49 2015
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***************************************************************************************
Forwarded from "Ask a Microscopist"
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realname - Cristovao de Lemos
Email - lemos_nh-at-ig.com.br
EDUCATION - Graduate College
QUESTION - To whom it may help,

I am contacting you in order to request some help to specify the more
appropriate blade to my microscopy necessities. I am using a microtome
HM 450 and I need a blade that allows me to prepare polyolefins samples
(soft samples) to be analyzed at Scanning Eléctron Microscopy. My
researches have identified a combination between a good blade + using a
freezing spray. To be checked!
So, the samples probably will be injection or compression molded and the
surface could not be damaged, which normally happen when it is prepared
in a room temperature. I found three options of blades as described below:

- Shandon™ Premium and Standard High-Profile Disposable Blades

- MB22 Premier Disposable Low-Profile Microtome Blade

- Edge-Rite™ Disposable Microtome Blades

Which one do you think is it more recommended? Otherwise, could you help
me to specify the better one?

I am looking forward to hearing from you.

Thanks in advance and best regards,



==============================Original Headers==============================
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From: lamiller-at-illinois.edu
Date: Mon, 22 Jun 2015 08:16:46 -0500
Subject: [Microscopy] U of Illinois, MRL Fall Biological Conference -- Vendor

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

It is time to start thinking about the Fall Biological Conference at the Materials Research Laboratory here at UIUC!



November 4th, 2015 Attendee registration is $20
1 day of lectures and student competition, next day tours and open lab in my Bio service lab here at MRL, as well as some vendor demonstrations.

The theme this year is Bioengineering, with our keynote speaker, MRL Director - Dr. John Rogers. rogers.matse.illinois.edu/



Other speakers:

Dr. Rashid Bashir illinois.edu/ds/detail?search_type=all&search=&from_result_list=true&skinId=0&userId=rbashir&sub=

Dr Brian Cunningham illinois.edu/ds/detail?userId=bcunning&search_type=all&search=brian%20cunningham&from_result_list=true&skinId=0&sub=

Dr. Ryan Bailey www.chemistry.illinois.edu/faculty/Ryan_Bailey.html

Dr. Rohit Bhargava chemimage.illinois.edu

Dr. Elizabeth Driskell illinois.edu/ds/search?search_type=userid&search=edriskel&skinId=10776




We will also have room for 9 student competitors. Competition rules will be copied at the end of this email. Entree is via registration form for the conference, if competing, you will be refunded the $20.




Dear vendors!
___________________


Your possibilities:

Table: $200 / conference

Once you have a table, at registration you may want to consider the following on the registration form:

Pizza sponser $50 = name on poster, name in announcements to user, and name on intersession slide show. ( we found out that since is part of conference, you can do this)



Student competition Prize sponsor $99.99 - given to the student who wins the presentation & poster competition. Prize named after you, prize mentioned on M&M list server.



You can find the online registration at the link: my.mrl.illinois.edu/eventreg/




Attendees:
_____________________
Your link for registration will soon be up at — mrl.illinois.edu/events/conferences-workshops

A way to upload your abstracts and chose to be a competitor will be in the registration form, we hope to have that up soon in the coming days.




Please join us for a fun day of lectures, science and getting to know each other, Please SAVE THE DATE!

Lou Ann





{ { { { { { { { { { { { { { { { {} } } } } } } } } } } } } } } }
Lou Ann Miller
Biological Electron Microscopy
Frederick Seitz Materials Research Laboratory
Lab Room 125 Office 374 MRL
104 South Goodwin Ave
Urbana, IL 61801
Campus mail code: MC-230

217-244-1567
lamiller-at-illinois.edu
http://mrl.illinois.edu

====================================================================

Student Competition Nov 4th 2015 BioConference
Prizes
• $99 for First Place, 2 categories: student and postdoc
• Name and photo announcement for MRL publications
• Announcement on the International Microscopy List serve
• Bonus: Competitors register for free.

Entry Requirements
• Must present a POSTER and a PRESENTATION

• Post Docs enter the post do category, Undergraduates and Graduate students enter the student category.
• Subject matter should be a biological- or a biological/materials science- project you have worked on, highlighting use of the core facilities of MRL, Beckman or IGB.
• Upload a 1/2 page abstract (2-3 images may be included) online with your registration by October 1st, 2015.
• Be available (a participant of the conference) during the Morning of Nov 4th, 2015
• The presentation should include tutorial-like explanations of the principles of the instruments and techniques used.
• The presentation should use Keynote or PowerPoint or other presentation software compatible with the presentation system.

Limitations
• Entries accepted from meeting registrants only
• Participants are to be Graduate, Undergraduate Students or a post doc from an institution of higher learning
• Entries limited to 9 presentations and posters
• The presentation shall be 15 minutes long, followed by a 5-minute Q&A session
• One speaker per entry

Judging criteria (including but not limited to)
• Methods and instrumentation explained in tutorial fashion
• Knowledge of the instrument(s) and technique(s) shown
• Subject delivered to the audience in an understandable and ordered manor
• Delivery that demonstrates understanding rather than memorization
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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 22 Jun 2015 17:45:12 -0500
Subject: [Microscopy] Fwd: [Filtered] MicroscopyListserverviaWWW:

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Greetings All,

I am trying to do post embedment immuno gold labeling on
brain tissue—so far I’ve had no signal, only uniform background.




The target is glycine. The resin being used is Epon8-12. The
secondary antibody is gold conjugated with 15 nm particles. The tissue is fixed
in 3% Paraformaldehyde and 1% Glutaraldehyde.




I’ve tried etching (this disintegrates the tissue even with recommended
25% Na Ethoxide). I’ve also tried deosmication with 1% Na Metaperiodate.




Does anyone have any recommendations for an antibody and/or
protocol that has proven success?




Unfortunately, because this tissue is used for other
purposes as well, I cannot change the fixation or embedment protocol. ( I
already know LR white is optimal for immuno staining). Any recommendations must
be for tissue that is already thin sectioned and collected on Ni Grids. 


Thanks much,
--
Anna Thiessen
Smith Lab Manager
Department of Auditory Neuroscience
University Wisconsin Madison
1300 University Ave.
Madison WI, 53703
608-262-0291


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From: hyi-at-emory.edu
Date: Tue, 23 Jun 2015 16:58:30 -0500
Subject: [Microscopy] Adjusting pH of uranyl acetate

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Dear. All:

Does anyone out there has experience adjusting pH of uranyl acetate? If yes, what chemical should be used? The desired pH is 5+.

Thank you all for any advice.

Hong


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From: thomas.horn-at-bsse.ethz.ch
Date: Wed, 24 Jun 2015 04:45:48 -0500
Subject: [Microscopy] Swiss Image-Based Screening Conference 2015 in Basel, Switzerland

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Hong,

Uranyl acetate will change into something else (partly Uranyl hydroxide) if one attempts to raise the pH and doing so will likely alter its chemical behaviour.
There is a paper by Tokuyasu from the late 70’s in which he describes the use of oxalic acid and some base to make ‘neutral uranyl acetate’. But this is no longer UAc. It was used to generate a sort of positive membrane contrast in cryosections.

Sorry, I do not have the reference close, but it shouldn’t be hard to find the paper on line.

Jan
Aurion

} On 24/06/2015, at 09:59, hyi-at-emory.edu wrote:
}
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} Dear. All:
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} Does anyone out there has experience adjusting pH of uranyl acetate? If yes, what chemical should be used? The desired pH is 5+.
}
} Thank you all for any advice.
}
} Hong


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From mike.sfsd4f564s6df45dsrbcay-at-gmail.com Wed Jun 24 00:13:30 2015
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Message-ID: {EA42E9BB.195D3EBF-at-gmail.com}

Dear colleagues,

We are happy to announce that the third edition of the Swiss Image-Based Screening Conference 2015 (SIBS 2015), 30.Sep -1.Oct in Basel, Switzerland is open for registration and abstract submission.

For this two-day international event, the scientific and organizing committee put a particular emphasis on the innovative aspects of cell-based assays design and development with screening applicability: new probes and tools, novel instrumental and methodological approaches will be covered by a panel of experienced researchers selected from academia and industry as invited speakers.

Please, visit the SIBS 2015 Conference website for the list of confirmed speakers, registration and for more information about the event: https://www.sibs2015.ethz.ch/

(It is advised to register early as Basel hotel prices can be high close to the event date and please note that the number of conference participants is limited).

We are looking forward to seeing you in Basel!

On behalf of the SIBS2015 scientific and organizing committee,

Thomas Horn and Gerardo Turcatti
Co-Chairs of SIBS 2015

Dr. Thomas Horn,
Head of the Single Cell Facility and the
Laboratory Automation Facility
Department of Biosystems Science and Engineering (D-BSSE)
Swiss Federal Institute of Technology Zurich (ETH)
Mattenstrasse 26, U1.46
CH 4058 Basel
Switzerland



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From: donc-at-asmicro.com
Date: Wed, 24 Jun 2015 09:02:42 -0500
Subject: [Microscopy] Electrical cable testing

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

In a cable carrying both low voltage and high voltage signals via multiple
insulated wires, it is possible to check for degradation of insulation by
measuring the insulation resistance. Since the resistance is very high, a
high DC voltage is used, such as 1KV to 5KV. My question is: for a cable
that is labeled "300V", is it safe to apply a test voltage higher than that?
regards,
Don
=============================================
Don Chernoff, Ph.D., President
Advanced Surface Microscopy, Inc.; 3250 N. Post Rd., Suite 120;
Indianapolis IN 46226 USA
E-Mail: donc-at-asmicro.com www.asmicro.com
Voice: 317-895-5630 Toll free: 800-374-8557 (in USA & Canada)
Fax: 317-895-5652
[business activities since 1990: analytical services in AFM, AFM probes,
consulting, training, calibration and test specimens,
calibration and measurement software, used NanoScope equipment.]
=============================================


==============================Original Headers==============================
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From: larry.ackerman-at-ucsf.edu
Date: Thu, 25 Jun 2015 11:45:13 -0500
Subject: [Microscopy] Goodbye and Thanks

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Email: dan.buntman-at-beamservices.com
Name: Dan Buntman

Organization: Beam Services, Inc.

Title-Subject: [Filtered] SMI3200 FIB system looking for a good home

Message: We have a Seiko SMI3200 FIB single beam system available for donation to any university or
other non-profit organization. The system has only been used ~3,500hrs., is fully functional and
currently operating in our facility with demonstrated resolution of {5nm. The recipient will be
responsible for crating, shipping and installation costs. If you are interested please contact me
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From news3409384wur-at-gmail.com Thu Jun 25 04:51:35 2015
Return-Path: {news3409384wur-at-gmail.com}
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Message-ID: {B5102E85.0F4466AA-at-gmail.com}

Hi!
I will be retiring on June 29th and would like to thank all of you in
the electron and light microscopy world for 44 years of friendship and
support. Since I started with a Siemens 101 at the VAMC in Iowa City in
1971 to the digital wonders of current electron and light microscopes at
UCSF in San Francisco I have received training, guidance and
encouragement from others in our community. Thank you.

If you wish to contact me after October please email me at
Larry-at-SaintRubidium.com

Best wishes,
Larry

--
Larry Ackerman, Specialist
Electron Microscopy Lab
Manager, Diabetes & Endocrinology Research Center Microscopy Core
UCSF, Dept. of Anatomy, Rm S657
513 Parnassus Ave., Box 0452
San Francisco, CA 94143

larry.ackerman-at-ucsf.edu

415-999-4758


==============================Original Headers==============================
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From: benada-at-biomed.cas.cz
Date: Fri, 26 Jun 2015 08:34:28 -0500
Subject: [Microscopy] Re: Philips CM100 trouble

Contents Retrieved from Microscopy Listserver Archives
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Hello All,
Our CM100 works again. The problem was in two capacitors C19 and C21. A
man from local electronic workshop localized them and replaced them with
new ones. Now, CRT on our CM100 works fine as before.

Thank you all again for your hints and valuable advices.

Oldrich

Here is the link to a summary:
http://www2.biomed.cas.cz/~benada/CM100_trouble_crt.html

--
Oldrich Benada
Institute of Microbiology AS CR, v.v.i.
Videnska 1083
142 20 Prague 4
Czech Republic

On Mon, 25 May 2015 03:41:44 -0500, benada-at-biomed.cas.cz wrote :
}
}
}
} ----------------------------------------------------------------------------
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} ----------------------------------------------------------------------------
}
} Hello All,
} We have a trouble with our old Philips CM100. The info CRT has gone.
} About two weeks the image on it was very faint, but still resolvable.
} Now the screen is completely dark. The problem is not in dimming
} circuits because the dimming of panel's LEDs is working fine and can
} be adjusted. I think that the problem is in CRT tube. Please does
} anybody had to solve such problem? I find out that CRT tube
} (M24-306WR/ED) is still available on the market.
}
} Thanking for any response in advance.
}
} Oldrich
}
} P.S. No response from service, up to now.
}
}




Upozorneni:
Neni-li v teto zprave vyslovne uvedeno jinak, ma tato E-mailova zprava nebo jeji prilohy pouze informativni charakter. Tato zprava ani jeji prilohy v zadnem ohledu ustavy AV CR, v.v.i. k nicemu nezavazuji. Text teto zpravy nebo jejich priloh neni navrhem na uzavreni smlouvy, ani prijetim pripadneho navrhu na uzavreni smlouvy, ani jinym pravnim jednanim smerujicim k uzavreni jakekoliv smlouvy a nezaklada predsmluvni odpovednost ustavu AV CR, v.v.i.

Disclaimer:
If not expressly stated otherwise, this e-mail message (including any attached files) is intended purely for informational purposes and does not represent a binding agreement on the part of Institutes of AS CR. The text of this message and its attachments cannot be considered as a proposal to conclude a contract, neither the acceptance of a proposal to conclude a contract, nor any other legal act leading to concluding any contract; nor it does not create any pre-contractual liability on the part of Institutes of AS CR.


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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 26 Jun 2015 16:59:22 -0500
Subject: [Microscopy] viaWWW:Manual for ETPSEMRA Robinson BSE controller

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Email: paul.cannard-at-huawei.com
Name: Paul Cannard

Organization: CIP Technologies/ Huawei

Title-Subject: [Filtered] Manual for ETPSEMRA Robinson BSE controller

Message: Does anybody have a PDF of the instruction manual of the ETPSEMRA controller for a Robinson
BSE detector manufactured c.2000. We don't appear to have one (SEM was ex-demo and the manual
probably just got overlooked) and I thought somebody out in the community might just have one. It is
easy enough to operate but I'm not sure how to engage the quadrants separately.

Thanks, Paul

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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 30 Jun 2015 07:51:38 -0500
Subject: [Microscopy] viaWWW:TEM pre-embeddment labeling procedure

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Email: zhiqiang-at-pdx.edu
Name: Zhiqiang Chen

Organization: Portland State University

Title-Subject: [Filtered] Portland State University Workshop SURFACE ANALYSIS by XPS and AES

Message: Portland State University Workshop
SURFACE ANALYSIS by XPS and AES

August 2nd 2015

Bldg. NASCC, Room 110, 710 SW Jackson, Portland OR 97201
ÂŹÂŹÂŹÂŹÂŹÂŹÂŹÂŹÂŹÂŹÂŹÂŹ
The Center for Electron Microscopy and Nanofabrication at Portland State University and Physical
Electronics cordially invite you to attend surface analysis Workshop including technical lectures
and CEMN facility tour.

Technical topics will include:
• XPS/AES fundamentals.
• Basic Concept of the Scanning X-ray microprobe VersaProbe II system.
• XPS applications, AES and UPS applications.
• Spectrum data processing fundamentals including Peak ID, Quantification, Curve Fit, Depth Profiles
(with LLS and Curve Fits), Chemical state mapping.
Technical tutorial lectures will be given by Senior Staff Scientist, Dr. Sankar Raman at of Physical
Electronics, followed by VersaProbe II system overview and demonstration sessions.

Please RSVP by July 27th to cemn.physics-at-gmail.com.

REGISTRATION: We have limited space for lectures and parking, please email us the registration form
as soon as possible so that we can make reservation of parking space for you. Participants will be
responsible for their own travel and lodging.

DEADLINES: Registration July 27, 2015 - late registrations will be NOT accepted. Registration info
is available at http://www.pdx.edu/cemn/event/phi-psu-xps-workshop-surface-analysis-xps-and-aes?delta=0


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From hanja07656515151tumaw-at-gmail.com Sun Jun 28 23:08:30 2015
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Email: dlowry-at-asu.edu
Name: David Lowry

Organization: Arizona State University

Title-Subject: [Filtered] TEM pre-embeddment labeling procedure

Message: We are looking for suggestions to resolve a problem with pre-embeddment labeling using the
1.4nm colloidal-gold conjugate and silver enhancement. The specimen is mouse brain and we are using
vibratome sections of approx. 90-100 um thickness. We have attempted to follow a few published
procedures with similar specimens but in preliminary trials we have encountered a large amount of
background debris in the form of irregular-shaped, soft-edged dark spots of varying density approx
30-60 nm diameter. We suspect the main source of this is myelin sheath material due to its
appearance and proximity. Here are particulars of the prep:

-perfusion fix with 3% PFA/0.2% GA in PBS
-vibratome
-re-immerse in perfusion mixture overnight 4C
-wash with PBS
-block sections with 10% goat-serum (NGS) in PBS with 0.3% Triton-X-100, 1 hr
-wash with 1% NGS in PBS
-1’ Ab in PBS with 1% NGS, 48 hrs 4C
-wash with PBS/1% NGS
-2’ Ab (Fab fragment) with 1.4nm gold in PBS/1% NGS, overnight 4C
-wash with PBS only
-1% GA fix in PBS
-wash with deionized water (also tried using 0.02M citrate pH 7.0 here)
-silver enhancement (various times, 30 sec to 4 min)
-wash with deionized water
-1% osmium and then continue with standard TEM prep, ultimately cutting 60 nm sections for observations

We have tried some variations such as bovine serum albumen instead of NGS during blocking and
labeling, and tris-buffer instead of phosphate but the problem persists. We're planning to try
thinner vibratome sections if possible. It seems a detergent is necessary to permeabilize the tissue
but might it is also be solubilizing the myelin? Any suggestions are appreciated.


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From: smithj-at-winthrop.edu
Date: Tue, 30 Jun 2015 08:11:57 -0500
Subject: [Microscopy] Bone polishing protocol with Minimet

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, all
I have a user who wishes to polish fresh (non-dried) bone samples to
around 20Âľm thickness and examine them in transmitted light and look at
the surface of the sample with our VP-SEM.
We have a Minimet. Does anyone out there have a polishing protocol to share?
TIA for a full protocol or any helpful hints,
Julian

--
Julian P.S. Smith III
Director, Winthrop Microscopy Facility
Dept. of Biology
Winthrop University
349 Columbia Ave
Rock Hill, SC 29733

803-323-2111 x6427 (vox)
803-323-3448 (fax)
803-524-2347 (cell)
Research Website www.birdnest.org/smithj
Personal Website www.rociada-east.net


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From: microscopylistserver-noreply-at-microscopy.com
Date: Tue, 30 Jun 2015 17:07:28 -0500
Subject: [Microscopy] viaWWW:fixation of white adipose

Contents Retrieved from Microscopy Listserver Archives
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Is there artifact there if you skip silver enhancement? Or silver enhancement without a gold labeling step? You need to figure out if you are enhancing endogenous salts or if that is background binding of clumped gold antibodies. Have you tried gold enhancement (e.g., Nanoprobes)? I find gold enhancement works much better than silver enhancement. I would have thought the Triton X-100 would have permeabilized the sections.



Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

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Email: dlowry-at-asu.edu
Name: David Lowry

Organization: Arizona State University

Title-Subject: [Filtered] TEM pre-embeddment labeling procedure

Message: We are looking for suggestions to resolve a problem with pre-embeddment labeling using the 1.4nm colloidal-gold conjugate and silver enhancement. The specimen is mouse brain and we are using vibratome sections of approx. 90-100 um thickness. We have attempted to follow a few published procedures with similar specimens but in preliminary trials we have encountered a large amount of background debris in the form of irregular-shaped, soft-edged dark spots of varying density approx
30-60 nm diameter. We suspect the main source of this is myelin sheath material due to its appearance and proximity. Here are particulars of the prep:

-perfusion fix with 3% PFA/0.2% GA in PBS -vibratome -re-immerse in perfusion mixture overnight 4C -wash with PBS -block sections with 10% goat-serum (NGS) in PBS with 0.3% Triton-X-100, 1 hr -wash with 1% NGS in PBS -1Â' Ab in PBS with 1% NGS, 48 hrs 4C -wash with PBS/1% NGS -2Â' Ab (Fab fragment) with 1.4nm gold in PBS/1% NGS, overnight 4C -wash with PBS only -1% GA fix in PBS -wash with deionized water (also tried using 0.02M citrate pH 7.0 here) -silver enhancement (various times, 30 sec to 4 min) -wash with deionized water -1% osmium and then continue with standard TEM prep, ultimately cutting 60 nm sections for observations

We have tried some variations such as bovine serum albumen instead of NGS during blocking and labeling, and tris-buffer instead of phosphate but the problem persists. We're planning to try thinner vibratome sections if possible. It seems a detergent is necessary to permeabilize the tissue but might it is also be solubilizing the myelin? Any suggestions are appreciated.


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29, 28 -- From PhillipsT-at-missouri.edu Tue Jun 30 08:41:14 2015
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From yuantainr-at-yahoo.com.tw Tue Jun 30 16:52:04 2015
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Email: Georgianne.Ciraolo-at-cchmc.org
Name: Georgianne Ciraolo

Organization: Cincinnati Children's Hospital Medical Center

Title-Subject: [Filtered] fixation of white adipose

Message: I have a researcher who is interested in doing EM on white adipose specifically the
mitochondria found within. Does anyone have a specific protocol for adipose fixation?

Thank you in advance

Georgianne Ciraolo
Sr. EM Tech
Department of Pathology

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From: microscopy.gmb-at-gmail.com
Date: Mon, Jun 22, 2015 at 7:46 AM
Subject: [Microscopy] Ask-a-Microscopist: Which blade for sectioining

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Hello Cristovao,

Unfortunately, I have little experience with these disposable blades.
I do, however, have years of experience sectioning polyolefins using
glass and diamond knives initially using a manual sledge microtome and
a cryogenic ultramicrotome for the last 30 years.

You got my attention when you mentioned using a freezing spray to cool
the polyolefin sample during microtomy. To cut polyolefins without
severe deformation, one needs to cool the sample to or near its glass
transition temperature (Tg). The Tg for polyproplene and polyethylene
are 0 C to -10 C and approximately -100 C to -130 C, respectively. It
is essential that the samples be cooled prior to and during cutting.
This can be achieved by simultaneously cooling the sample in the
sample chuck and the blade prior to and during cutting. I achieved
this by carefully pouring a stream of liquid nitrogen (LN2) over the
blade and the sample (while it is mounted in the chuck) for several
minutes before cutting is started and continued without interruption
during cutting. The Tg of polypropylene is sufficiently high that you
might use a freezing spray. However, the amount of spray needed to
adequately cool the sample prior to and during cutting may be very
expensive. For this reason, I suggest LN2 for all cryomicrotomy
applications.

Please feel free to contact me off-line as needed.

I wish you all the best,

Gary M Brown
Polymer Microscopy Consultant
microscopy.gmb-at-gmail.com




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realname - Cristovao de Lemos
Email - lemos_nh-at-ig.com.br
EDUCATION - Graduate College
QUESTION - To whom it may help,

I am contacting you in order to request some help to specify the more
appropriate blade to my microscopy necessities. I am using a microtome
HM 450 and I need a blade that allows me to prepare polyolefins samples
(soft samples) to be analyzed at Scanning ElĂŠctron Microscopy. My
researches have identified a combination between a good blade + using a
freezing spray. To be checked!
So, the samples probably will be injection or compression molded and the
surface could not be damaged, which normally happen when it is prepared
in a room temperature. I found three options of blades as described below:

- Shandon™ Premium and Standard High-Profile Disposable Blades

- MB22 Premier Disposable Low-Profile Microtome Blade

- Edge-Rite™ Disposable Microtome Blades

Which one do you think is it more recommended? Otherwise, could you help
me to specify the better one?

I am looking forward to hearing from you.

Thanks in advance and best regards,



==============================Original Headers==============================
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From: microscopy.listserver-at-gmail.com
Date: Mon, 6 Jul 2015 18:29:19 -0500
Subject: [Microscopy] Fwd: [Filtered] MicroscopyListserverviaWWW:

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Email: plarson-at-ou.edu
Name: Preston Larson

Organization: University of Oklahoma

Title-Subject: [Filtered] Looking for Zeiss Vacuum Flange

Message: Hi all,

We're looking for a couple of Zeiss SEM vacuum flanges, 7.5 cm diameter, 4 x 3 mm bolts. We are
looking to modify these flanges for an application on an existing microscope.

Would anyone have access to any spare flanges perhaps off an unused or decommissioned microscope
that they would be willing to part with?

If so, please contact me off list.

Thanks,
Preston Larson
plarson-at-ou.edu


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From mike.sfsd4f564s6df45dscuhay-at-gmail.com Thu Jul 2 10:46:35 2015
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Message-ID: {9653FC97.C2D1358C-at-gmail.com}

Hi everyone, we acquired a gift of an electron energy-loss spectrometer
and digital instrumentation for a Gatan DigiPEELS model 766 (ultimately
to go on a TEM), but without any software; fortunately we had cables and
are hoping to resurrect the system.

We are looking for a copy of some "driver" software, circa 1995 that is
used to talk to a Gatan DMA card (our card is in a NuBus slot). We have
version 1.7.5 of FilterControl and already know that version 1.7.1 was
written for the PCI cards that followed the NuBus cards at about that
time. In other words we have the wrong software and are seeking someone
who can help us please.

In particular there is an application (called PEELS Control) and a
Macintosh Extension; as described in the EL/P 3.0 Users Guide (page
2-5). If you have such a system, or used to have and still have the
disk, or even can e-mail a disk image (zipped perhaps), the size is less
than 800kB (an old double-density floppy disk) and we would very interested.

There are alternative paths to our salvation, one would be to get a
suitable DMA card that fits a PCI bus - since we have a working version
of FilterControl written for PCI. Suggestions, ideas and opinions could
be shared here, or message offers of support to help resolve our impasse
would be most welcome.

Thanks
Rob Keyse

--
Robert Keyse, DPhil

Research Scientist
Lehigh University

5, East Packer Avenue,
Whitaker Laboratory
Bethlehem,
PA 18015-3194

Office (610)758-3465
Fax (610)758-4244


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Email: anaitbouda-at-cdta.dz
Name: NAITBOUDA ABDELYAMINE

Organization: cdta

Title-Subject: [Filtered] EDS-DEWAR-Problem

Message: we have a leak of nitrogen in the dewar walls of EDS system
edax (CDU edax with SiLi detector SUTW window.).

are there any solutions for these problem ,don't know the model of
vacuum valve

https://drive.google.com/folderview?id=0Bykkba-IjjzHfjY5ZDV3Q2M4UFBrRzk2aGdRdHZvd3hLU2dnN2k2TzNDQXhVeG56ZURHQjA&usp=sharing


Best regards

Naitbouda Abdelyamine

SEM Lab service Engineer at advanced technologies Development Center
-CDTA Algers ALGERIA









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From: maryard-at-uga.edu
Date: Thu, 9 Jul 2015 07:47:28 -0500
Subject: [Microscopy] LM Position Announcement: Chief Histology Technician

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Title-Subject: [Filtered] Elemental Hg analysis using SEM/EDS

Message: Anyone have experience looking for trace amount of elemental
mercury in samples?


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From massnewsletter4654654bytua-at-gmail.com Wed Jul 8 11:52:18 2015
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Message-ID: {3B99BBE4.F9EB37EE-at-gmail.com}

Dear listers,

We are currently looking for a post-doc here at ORNL, for someone who has experience in defect analysis in materials via (S)TEM, and related skills. The posting can be found at http://1.usa.gov/1JU927S , or at jobs.ornl.gov . I have pasted the description below, as well. Please pass this along to anyone who may be interested.

Thanks,
Chad

---------------------
Chad M. Parish, Ph.D.
Research and Development Staff Member
Radiation Effects and Microstructural Analysis Group
Materials Science and Technology Division
Oak Ridge National Laboratory
Phone: 1 865 574 0092
Email: parishcm-at-ornl.gov
http://web.ornl.gov/sci/psd/mst/remag/parish.shtml

Postdoctoral Research Associate - Plasma Material Interactions / NB50493913

End Posting Date
08/15/2015

Purpose
Under general supervision, the incumbent will focus/research on electron microscopy and microstructural analysis of radiation effects and plasma-materials interactions in refractory metals. This position resides in the Radiation Effects and Microstructural Analysis Group in the Materials Science and Technology Division (MSTD), Physical Sciences Directorate (PSD) at Oak Ridge National Laboratory (ORNL).

The Radiation Effects and Microstructural Analysis Group (REMAG) at ORNL uses computer modeling and experimental characterization methods (microscopy, thermophysical and mechanical properties) to advance the science of radiation effects on materials. Most of the work is performed in the Low Activation Materials Development and Analysis (LAMDA) laboratory, which houses three FEI DualBeam focused ion beams, one JEOL J2100F field-emission 200 kV general-purpose TEM-STEM, and an FEI Talos F200X field-emission 200 kV analytical TEM-STEM. Other ORNL laboratories include ion beam lines, additional FIBs and TEMs, multiple aberration-corrected STEMs, and atom-probe tomography. This project will explore the fundamental behavior of plasma-materials interactions for fusion energy by exposing tungsten and related high-temperature materials to low-energy, high-flux plasmas and measuring the response of the material to the disposition of the injected plasma ions, with an eventual long-term goal of designing more robust plasma-facing materials for tokamak systems.

Major Duties/Responsibilities
* Design and lead experiments in electron microscopy, particularly transmission electron microscopy (TEM), of defect structures formed in refractory metals under plasma and ion-irradiation exposure
* Collaborate with plasma and ion-irradiation laboratories to produce plasma-exposed and ion-irradiated specimens for electron microscopy examination * Prepare TEM specimens through electropolishing and focused ion beam (FIB) techniques. Examine specimens using scanning electron microscopy (SEM) and electron backscatter diffraction (EBSD)
* Travel domestically to collaborator facilities for plasma and / or ion beam exposures of specimens
* Collaborate within the ORNL LAMDA lab to utilize other research teams' expertise (nanoindentation, positron annihilation spectroscopy, etc.)
* Responsible for presenting and reporting research results and publishing scientific results in peer-reviewed journals in a timely manner
* Ensure compliance with environment, safety, health and quality program requirements
* Maintain strong commitment to the implementation and perpetuation of values and ethics Qualifications Required
* A PhD in Materials Science and Engineering, or a closely related field, completed within the last 5 years
* An excellent record of productive and creative research demonstrated by publications in peer-reviewed journals
* Expertise, as measured through first-author publications and/or major conference presentations, in transmission electron microscopy (TEM) and related methods (e.g., STEM, analytical STEM) in defect analysis in structural materials
* Expertise in TEM sample preparation methods, such as focused ion beam (FIB) or electropolishing
* Excellent written and oral communication skills and the ability to communicate in English to an international scientific audience

QUALIFICATIONS DESIRED: Expertise in materials properties and the influence of defects and processing on materials, particularly metals, is strongly desired. Knowledge or expertise in radiation effects in materials or plasma-materials interactions is highly desirable. Experience or expertise in scanning electron microscopy (SEM), electron backscatter diffraction (EBSD), in situ TEM experiments, and related topics is highly desirable. Knowledge of MATLAB software and programming is helpful.

Appointments will initially be for 24 months with a possibility of an extension of up to 12 months. Initial appointments and extensions are subject to performance and availability of funding. Appointment will start beginning of October 2015.

Please provide a list of publications when applying for this position. Three letters of reference are required and can be uploaded to your profile or emailed directly to PSDrecruit-at-ornl.gov. Please include the title of the position in the subject line.

This position will remain open for a minimum of 5 days after which it will close when a qualified candidate is identified and/or hired.

We accept Word(.doc, .docx), Excel(.xls, .xlsx), PowerPoint(.ppt, .pptx), Adobe(.pdf), Rich Text Format(.rtf), HTML(.htm, .html) and text files(.txt) up to 2MB in size. Resumes from third party vendors will not be accepted; these resumes will be deleted and the candidates submitted will not be considered for employment. If you have trouble applying for a position, please email ORNLRecruiting-at-ornl.gov.

Notice: If the position requires a Security Clearance, reviews and tests for the absence of any illegal drug as defined in 10 CFR 707.4 will be conducted by the employer and a background investigation by the Federal government may be required to obtain an access authorization prior to employment and subsequent reinvestigations may be required. If the position is covered by the Counterintelligence Evaluation Program regulations at 10 CFR 709, a counterintelligence evaluation may include a counterintelligence-scope polygraph examination. ORNL is an equal opportunity employer. All qualified applicants, including individuals with disabilities and protected veterans, are encouraged to apply. UT-Battelle is an E-Verify Employer.



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From ferguson651651615asis-at-gmail.com Thu Jul 9 03:08:22 2015
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To the Microscopy Community,

We are currently looking for an experienced person for the Chief Histology Technician position in the Department of Pathology at the College of Veterinary Medicine, University of Georgia. The posting can be found at www.ugajobsearch.com, Posting #20151272. A full description of the position may be found below. Please pass this along to anyone you feel may be interested.

Kind regards,
Mary

*****************
Mary Ard, BS, HT(ASCP), AAS
EM Lab Coordinator
Dept of Pathology
College of Veterinary Medicine
501 D.W. Brooks Drive
University of Georgia
Athens, GA 30602
706-542-5537
maryard-at-uga.edu


CHIEF HISTOLOGY TECHNICIAN

The University of Georgia, College of Veterinary Medicine is dedicated to training future veterinarians,
providing services to animal owners and veterinarians, and conducting investigations to improve the health of animals as well as people. The college benefits pets and their owners, food producing animals, and wildlife by offering the highest quality hospital and diagnostic laboratory services. We have the most technologically advanced facilities located on a university campus, and we are dedicated to safeguarding public health by studying emerging infectious diseases that affect both animal and human health.

Position Announcement: Chief Histology Technician
Job Summary: This is a supervisory and technical position in the department management and preparation of tissue specimens for pathological examinations. The incumbent of this position is responsible for planning and supervising the work activities of other Histology Technicians. Work involves the hiring, mentoring, performance management, assigning work areas and duties, training new technicians, and instructing other technicians in histologic techniques when there are difficult work assignments. The Chief Histology Technician is responsible for getting work out on time and without error. Work is reviewed by a pathologist and instructions are received from same.

Qualifications:
1. High School Diploma and a minimum of 2 years college in an appropriate field, and at least 5 years of experience in a histology lab, or any equivalent combination of training and experience. Minimum of three (3) years supervisory experience.
2. Must have HT or HLT certification at time of appointment, with experience with immunohistochemistry.
3. Thorough knowledge of budgetary procedures to support the effective use of funds and support profitability.
4. Competent in ordering supplies and equipment ensuring cost effectiveness and waste minimization.
5. Ability to plan and organize work schedules for subordinates to ensure adequate and efficient staffing levels. Ability to supervise technical personnel including hiring, training, motivating, coaching or discipline, and performance assessments.

Compensation: Minimum annual salary is $43,694 or higher depending upon experience. In addition UGA employees have access to a choice of health plan options and vision, dental, short term and long term disability plans, generous leave accruals. Retirement plans include either Teachers Retirement System of Georgia or a choice of several 401(k) plans. Details may be found here: http://www.hr.uga.edu/benefits

To apply for this position please visit www.ugajobsearch.com then type in Posting Number 20151272. This will take you directly to Chief Histology Technician job opening. You must create an online application form, and please feel free to attach any supplemental documents you prefer to support your application.



==============================Original Headers==============================
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From: wtivol-at-sbcglobal.net
Date: Sat, 11 Jul 2015 14:57:10 -0500
Subject: [Microscopy] Re: viaWWW:Elemental Hg analysis using SEM/EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

***************************************************************************************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
not a member the listserver, and
**any reply should go directly to the poster**
as well as to the list.
Using the "reply" function in your email does *not* send your answer
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****************************************************************************************

Name: Nathan Velez
School: UC Berkeley
Grade/Education Level: Graduate
Location: Berkeley, CA
Email: nrvelez-at-lbl.gov

Nathan,

What is the glass transition temperature (Tg) of the non-sulfonated
PS-co-DVB copolymer? I expect it would be appreciably higher than
room temperature. Regardless, the crumbling of the sections on the
dry knife indicates too low a cutting temperature.

The first pieces of information a microtomist needs to know about the
polymer are (1) its composition (polarity, solvent susceptibility,
etc.) and (2) the Tg of the polymer. Best microtomy results for
virtually any polymer will be obtained by cryosectioning at or
slightly below the Tg or at room temperature for high Tg polymers.
Finally, my decades of experience in cryoultramicrotomy of polyolefin
plastics/elastomers and block copolymers led me to believe that DRY
sectioning is the best way to section these materials. I know that
others have success in this area but I found that liquid
cryoultramicrotomy just wasn't worth the trouble caused by wetting of
the back of the knife and the sample, swelling of the sample, residue
of DMSO on the sections, etc. Feel free to contact me off-line as
needed.

I wish you all the best.

Gary Brown
Consultant in Polymer Microscopy


"An expert is a person who has made all the mistakes which can be made
in a very narrow field.” and "Prediction is very difficult, especially
if it's about the future." Niels Bohr

---------- Forwarded message ----------
X-from: {oshel1pe-at-cmich.edu}

***************************************************************************************
Forwarded from "Ask a Microscopist"
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not a member the listserver, and
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to the person asking the question.
Please copy their email address from their question.
****************************************************************************************

Name: Nathan Velez
School: UC Berkeley
Grade/Education Level: Graduate
Location: Berkeley, CA
Email: nrvelez-at-lbl.gov

Hello everyone,

We are renovating our histology lab and are shopping around for some
new or used equipment. Our main user is interested in a Leica 2155
microtome (he has used this instrument in the past) and I have been
told that this is a good model in that it works well and is still
serviceable. Does anyone else have anything to add about this
instrument?

We are also in need for an embedding center. Our main user has used a
Leica EG1150 and a Thermo Shandon Histocentre 2, but he is open to
other models so long as they are still serviceable and reasonably
priced.

Suggestions on a flotation work station/water bath are also welcome.
Our main user has used a Triangle Biomed Sci FWS-120, but is open to
other serviceable models.

Ideally, we'd purchase all 3 (used) items for ~$12,000. We do have a
bigger budget if we have to spend more though.

I've looked around on ebay and various used instrument sites, but I
thought I'd ask the experts for suggestions before I proceeded with
any purchases.

Thank you in advance,

Blanca

-----------------------------------------
Blanca Carbajal Gonzalez, M.S.
Director of Microscopy
Science Center
50 College St
Mount Holyoke College
Clapp Laboratory 123
Office: 413-538-3118
Cell: 559-905-7138
bicarbaj-at-mtholyoke.edu

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From yuantainr-at-yahoo.com.tw Fri Jul 10 12:27:51 2015
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On Jul 7, 2015, at 12:16 AM, microscopy.listserver-at-gmail.com wrote:

} Name: Fern Stones
}
} Title-Subject: [Filtered] Elemental Hg analysis using SEM/EDS
}
} Message: Anyone have experience looking for trace amount of elemental
} mercury in samples?
}
Dear Fern,
Since no one else has posted on this, I examined some river sediment
with EDS, and while I wasn't specifically looking for Hg, I did find
many elements. I also had enough overvoltage to see even the k-
lines. There are two problems that you face: The first is that EDS
is not sensitive to amounts much smaller than 1%, and the second is
that Hg is volatile, so the amount under the beam will be continually
decreasing. If you have access to WDS, it will be easier to find
small amounts of Hg before it goes away. Good luck.
Yours,
Bill




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6, 33 -- From: Bill & Sue Tivol {wtivol-at-sbcglobal.net}
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6, 33 -- Subject: Re: [Microscopy] viaWWW:Elemental Hg analysis using SEM/EDS
6, 33 -- Date: Fri, 10 Jul 2015 19:08:40 -0700
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6, 33 -- X-Mailer: Apple Mail (2.936)
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From: rmott-at-pulsetor.com
Date: Sun, 12 Jul 2015 10:26:40 -0500
Subject: [Microscopy] viaWWW:Elemental Hg analysis using SEM/EDS

Contents Retrieved from Microscopy Listserver Archives
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Hi Bill

I also held back, as my acquaintance with mercury in the SEM is with a tooth
filling, a mercury amalgam! Acquired when a student broke a tooth the
"specimen" proved to be very interesting as an EDX investigation. Made up
of mercury, silver, tin and copper, we pick up mercury if we jump to a new
area but, dwelling too long on an area the mercury may not show .

For those who would like a nice EDX test specimen, ask a dentist, they often
have a pot full of potential specimens.

Without any doubt specimens like this make great teaching material.

Regards

Steve

Steve Chapman FRMS
Electron Microscopy Consultancy and Training
www.emcourses.com
Cell +44 (0)7711606967

-----Original Message---- -
X-from: wtivol-at-sbcglobal.net [mailto:wtivol-at-sbcglobal.net]
Sent: 11 July 2015 20:59
To: protrain-at-emcourses.com

wtivol-at-sbcglobal.net wrote:
}
} The first is that EDS
} is not sensitive to amounts much smaller than 1%, and the second is
} that Hg is volatile

SEM/EDS sensitivity can be much better. I've gotten
better than 500 PPM detection limits, using an SDD
at high currents (5 nA or so, but still less than a probe) for
about 1 minute acquisition times (~15-20 million counts in the
spectrum) with very careful sum-peak stripping.

Can't speak to volatility, but I suppose a cold stage plus
area scanning might work if a yes/no answer is all that's
needed and that meets your definition of "trace". The Hg La line
is in a nice place WRT potential overlaps, with the exception of
Ge K which is still more than 100 eV away.

Depending on the sample and the spatial resolution requirement,
XRF might be a better tool for this if the sample is something
like Bill's river sediment and you need one or two more orders
of magnitude in sensitivity. No beam heating issues.

Rick Mott, PulseTor LLC


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From: rmott-at-pulsetor.com
Date: Sun, 12 Jul 2015 11:20:21 -0500
Subject: [Microscopy] viaWWW:Elemental Hg analysis using SEM/EDS

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

wtivol-at-sbcglobal.net wrote:
}
} The first is that EDS
} is not sensitive to amounts much smaller than 1%, and the second is
} that Hg is volatile

SEM/EDS sensitivity can be much better. I've gotten
better than 500 PPM detection limits, using an SDD
at high currents (5 nA or so, but still less than a probe) for
about 1 minute acquisition times (~15-20 million counts in the
spectrum) with very careful sum-peak stripping.

Can't speak to volatility, but I suppose a cold stage plus
area scanning might work if a yes/no answer is all that's
needed and that meets your definition of "trace". The Hg La line
is in a nice place WRT potential overlaps, with the exception of
Ge K which is still more than 100 eV away.

Depending on the sample and the spatial resolution requirement,
XRF might be a better tool for this if the sample is something
like Bill's river sediment and you need one or two more orders
of magnitude in sensitivity. No beam heating issues.

Rick Mott, PulseTor LLC


==============================Original Headers==============================
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From: ajhall-at-prairienanotech.com
Date: Sun, 12 Jul 2015 14:36:42 -0500
Subject: [Microscopy] re: Elemental Hg analysis using SEM/EDS - suggest ICP-MS, ICP-OES

Contents Retrieved from Microscopy Listserver Archives
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I would suggest inductively coupled plasma- optical emission
spectroscopy (ICP-OES) or inductively coupled plamsa- mass-spectrometry
(ICP-MS) if you have access to them. ICP-MS is capable of ppq in the
right conditions, and frequently in the ppt. Samples do not need to be
liquid, they are digested or ashed, then digested, for introduction into
the instruments. While SEM-EDS or XRF might be capable of detecting the
element, the conversion from excitation volume, ZAF correction, and peak
area to a ppm or similar number is non-trivial.

I hope this helps, and good luck with your research!
-Allen J. Hall
http://www.prairienanotech.com/

rmott-at-pulsetor.com wrote:
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} wtivol-at-sbcglobal.net wrote:
} }
} }
} } The first is that EDS
} } is not sensitive to amounts much smaller than 1%, and the second is
} } that Hg is volatile


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From: apamatos-at-gmail.com
Date: Sun, 12 Jul 2015 18:09:52 -0500
Subject: [Microscopy] SEM need an Oxford X-Ray detector

Contents Retrieved from Microscopy Listserver Archives
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Hello

I have a Pentafet Link Oxford X-Ray Detector Module 5431 10 MMSQ, but
the berilium window is broken.
I need a similar/compatible detector to ressurrect the system. These
days LN2 detectors are being abandoned and I have hopes that someone has
one that may be offered or purchased at low enough price.
We will of course take care of the additional cost of the transport.
Can anybody help?

Best wishes and thanks in advance. Please contact-me to the e-mail below

Prof. A.P. Alves de Matos
Head of Egas Moniz Electron Microscopy and Histopathology Centre,
caparica, Portugal
apamatos-at-gmail.com


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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 13 Jul 2015 07:21:26 -0500
Subject: [Microscopy] viaWWW:Can molybdenum and sulfur be separated on EDS elemental maping?

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Email: oscar.rivera-at-uda.cl
Name: Oscar Rivera

Organization: Universidad de Atacama

Title-Subject: [Filtered] Can molybdenum and sulfur be separated on EDS elemental maping?

Message: Difference between MoL and SK lines (2.307 and 2.293 keV) is smaller than energy resolution
of many EDS detectors, so both peaks are generally overlapped.

This problem turns bigger in EDS elemental mapping, so I want to ask if there is a procedure or
"philosopy" to confront this problem and obtain a representative and correct mapping from a sample.


Best Regards,
ORRL

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From: microscopylistserver-noreply-at-microscopy.com
Date: Mon, 13 Jul 2015 17:44:28 -0500
Subject: [Microscopy] viaWWW:Preparing Microbeam Standards

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Email: es.smrln-at-gmail.com
Name: Erin Summerlin

Organization: Materials Analysis Startup Lab

Title-Subject: [Filtered] Preparing Standards

Message: Does anyone have any tips or a good method for mounting standards in a standard block for
SEM/Probe analysis? We got the Smithsonian microbeam standards recently and are trying to figure
out the most effective way to create our own in-house standards block. Any help or advice would be
much appreciated.

Erin

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From: donovan-at-uoregon.edu
Date: Mon, 13 Jul 2015 18:01:41 -0500
Subject: [Microscopy] Re: viaWWW:Preparing Microbeam Standards

Contents Retrieved from Microscopy Listserver Archives
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We mount all of our standards in acrylics pucks with 35 pre-drilled
holes. The advantage is that when the epoxy shrinks as it cures, the
whole mount shrinks without introducing any cracks which catch
abrasives, oil, etc.

Details are here:

http://probesoftware.com/smf/index.php?topic=172.msg1436#msg1436

john

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}
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}
} Title-Subject: [Filtered] Preparing Standards
}
} Message: Does anyone have any tips or a good method for mounting standards in a standard block for
} SEM/Probe analysis? We got the Smithsonian microbeam standards recently and are trying to figure
} out the most effective way to create our own in-house standards block. Any help or advice would be
} much appreciated.
}
} Erin
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--
John J. Donovan donovan-at-uoregon.edu
University of Oregon (541) 346-4632 (office)
1443 E. 13th Ave (541) 346-4655 (probe)
Eugene, OR (541) 346-6854 (FAX)
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Cameca SX100 Schedule: http://sweetwater.uoregon.edu/sx100
Cameca SX50 Schedule: http://sweetwater.uoregon.edu/epma
FEI Quanta Schedule: http://sweetwater.uoregon.edu/sem


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From: lamiller-at-illinois.edu
Date: Tue, 14 Jul 2015 08:04:59 -0500
Subject: [Microscopy] Invitation to The Fall MRL Biological/Materials conference,

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello All,

Anyone have a protocol or information how to process LCM excised tissue
collected on polymer cap for scanning and transmission EM?

We have FluoroNanogold tagged fungal hyphae. The target cells will be
captured using a Leica LMD7000 and processed for EM.

My questions are;

1) Has this been done before?
2) Can EM processing be done inside the cap containing tissue?
3) If not, how does one remove the tissue from UV cured polymer cap?

Any help or advice would be much appreciated.
Karen



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From advertise.bz222uve-at-gmail.com Tue Jul 14 02:05:19 2015
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Dear Microscopy List Serve, you are welcome to come to our November 4th & 5th MRL biological conference.

A day of lectures and student competition, the next day will be tours, open lab in my bio-service lab, and vendor instrument demonstrations.


The user, the registration for the fall conference is only ----- $20 -------
Rules, registration, the schedule and conference poster are found at:


http://mrl.illinois.edu/mrl-biological-conference-2015



This year the emphasis is on Bioengineering, and includes speakers:



Dr. John Rogers, UIUC Materials Research Laboratory
Electronics for the Human Body

Dr. Elizabeth Driskell, UIUC Veterinary Medicine
Cellular and Organ Ultrastructure

Dr. Rashid Bashir, UIUC Bioengineering
Building Biological Machines with Living Cells

Dr. Brian Cunningham, UIUC Bioengineering
Quantitative Imaging of Live Cell Adhesion by Photonic Crystal Enhanced Microscopy

Dr. Ryan Bailey, UIUC Chemistry
New Bioanalytical Tools

Dr. Rohit Bhargava, UIUC Bioengineering
Chemical Imaging for Molecular and Material Anaysls in Cancer

** 9 student competitors




We are excited to have such a good line up, and a program that will be of
interest to material sciences as well as biology.


We will once again have a student competition, students from other institutions are welcome.
There is also a category for post docs to show a poster, give a 15 min. presentation, and the winner of
each category will win $99. The topic should involve biological components,
involve instrumentation that would be used in one of our core facilities
(LM, confocal,TEM, SEM SIMMS etc See IGB, Beckman and MRL institutes under illinois.edu) and be in tutorial format.

Your names will be posted on the MRL
website, and to the national microscopy list serve.

Students register, select yes on the competition, submit a 1/2 page
abstract by October 15th. If your entry is selected, the registration
fee will be refunded to you. ** Note a poster is expected.

Come join us for food, tours, lectures, vendors and a great educational
experience!

email me with any questions

Lou Ann Miller
Biological and Soft Materials at MRL





{ { { { { { { { { { { { { { { { {} } } } } } } } } } } } } } } }
Lou Ann Miller
Biological Electron Microscopy
Frederick Seitz Materials Research Laboratory
Lab Room 125 Office 374 MRL
104 South Goodwin Ave
Urbana, IL 61801
Campus mail code: MC-230

217-244-1567
lamiller-at-illinois.edu
http://mrl.illinois.edu



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38, 38 -- Subject: Invitation to The Fall MRL Biological/Materials conference,
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From: romina.cialdella-at-nih.gov
Date: November 17, 2015
Subject: [Microscopy] Register for NCI's Frontiers in Light Microscopy Symposium

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Register for NCI's Frontiers in Light Microscopy Symposium


The Center for Cancer Research at the National Cancer Institute (NCI) invites you to a free, one-day national symposium titled "Frontiers in Light Microscopy". The event should be an exciting forum for discussion and debate on the current state of the field.




Sessions:

- Tissue Imaging
- Probes
- Super Resolution


Speakers:

- Joerg Bewersdorf, Yale School of Medicine, New Haven, CT
- Peter Friedl, University of Texas MD Anderson Cancer Center, Houston, TX
- Klaus Hahn, University of North Carolina School of Medicine, Chapel Hill, NC
- Samie Jaffrey, Weill Cornell Medical College, New York, NY
- Na Ji, HHMI/Janelia Research Campus, Ashburn, VA
- Daniel Larson, NCI, Bethesda, MD
- Wesley Legant, HHMI/Janelia Research Campus, Ashburn, VA
- Jennifer Lippincott-Schwartz, National Institute of Child Health and Human Development, Bethesda, MD
- Hari Shroff, National Institute of Biomedical Imaging and Bioengineering, Bethesda, MD
- Roberto Weigert, NCI and National Institute of Dental and Craniofacial Research, Bethesda, MD


Registration is free, but seating is limited. Register today at: http://1.usa.gov/1JQt4Tf.

Please mark November 17, 2015 on your calendar for this exciting event, and forward this e-mail invitation and the conference flyer to colleagues.

For conference-related questions, please contact conferenceplanning-at-mail.nih.gov.



--
Romina Cialdella
Office of Communications and Public Liaison
National Cancer Institute
National Institutes of Health
9609 Medical Center Drive, 2E424
Rockville, MD 20850
Direct: 240-276-6659
romina.cialdella-at-nih.gov



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From: David.Wilbur-at-tufts.edu
Date: Thu, 16 Jul 2015 15:14:07 -0500
Subject: [Microscopy] JEOL 840A SEM available (non-working)

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I have a JEOL JSM- 840A SEM, with Oxford ISIS EDS that has not worked for about 2 years. Before I send it to a scrapyard, I want to be sure it has no value to anyone else. About 2 years ago it developed a vacuum problem that resulted in serious oxidation of the diffusion pump oil. Even after cleaning the pumps and replacing the oil, I have been unable to achieve workable vacuum. Even before the vacuum problems the stigmators stopped working. The EDS was working until the SEM went down. I am certain that it is not economically feasible to resurrect the microscope, and I am offering it free to anyone that wants it, in whole or in part. Preference will be given to those wanting, and willing to cart away the largest portion. I am willing to ship small parts that can be safely packed and shipped by wrapping in a few layers of bubble wrap and putting in a medium sized box(at recipients expense, of course). Larger pieces must be picked up in Medford, MA , 5 miles north of Boston. I can provide assistance in loading. If you have any interest, please contact me off list.

____________________________
David J. Wilbur, Ph.D.
Instrumentation Specialist
Department of Chemistry
Tufts University
62 Talbot Ave.
Medford, MA 02155
voice:    617-627-2163
Fax:    617-627-3443
email:    david.wilbur-at-tufts.edu




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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 16 Jul 2015 18:43:22 -0500
Subject: [Microscopy] viaWWW:How to process cells grown on Cover slip for TEM

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Email: ravi.thakkar369-at-gmail.com
Name: Ravi Thakkar

Organization: Kansas State University

Title-Subject: [Filtered] How to process cells grown on Cover slip for TEM.

Message: Hi Listeners,
I have one user, she wants to do TEM study of cultured Neurons on cover slip. She wants to preserve
elongated nerve processes. We can not go with suspension culture and make its pellets.
If any body could help me here.
TIA.

Ravi.

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From: microscopylistserver-noreply-at-microscopy.com
Date: Thu, 16 Jul 2015 18:44:13 -0500
Subject: [Microscopy] viaWWW:Wear pattern of used sputter target

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Title-Subject: [Filtered] Wear pattern of used sputter target.

Message: We have Denton Desk II Sputter coater. An Attached is the image of glowing sputter target.
Is it need to replaced or it has more lifespan to go on.



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From: J.W.Taylor-at-massey.ac.nz
Date: Thu, 16 Jul 2015 21:30:13 -0500
Subject: [Microscopy] viaWWW:How to process cells grown on Cover slip for TEM

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Hi Ravi

I have had success looking at drosophila testes that have been adhered to a coverslip and then procressed into resin for TEM.

I followed a method by J P Chang where you process the samples normally (I used a glass petri dish to contain the solutions with something on the bottom to hold up the coverslip and make it easier to pick up), infiltrate on a shaker plate and then embed on a mold that I made from silicon. To separate the coverslip from the resin I dipped the sample in liquid nitrogen briefly and didn't notice any changes in the tissue.

The paper is: Chang J.P. (1971) A new technique for separation of coverglass substrate from epoxy-embedded specimens for electron microscopy, 37, 370-377.

You can also process as normal, infiltrate in the glass petri dish on a shaker plate and then use Beem capsules to embed. You put some resin (don't fill it right up) in the Beem capsule and then carefully invert it onto the area of interest and carefully place in the oven. The capsules can be quite easy to tip over. They can be separated using liquid nitrogen also.

Good luck!

Jordan Taylor
Microscopy Technician
Manawatu Microscopy and Imaging Centre
Massey University
Private Bag 11-222
Palmerston North, 4442
Ph +64 6 356 9099 extn 84719



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Email: ravi.thakkar369-at-gmail.com
Name: Ravi Thakkar

Organization: Kansas State University

Title-Subject: [Filtered] How to process cells grown on Cover slip for TEM.

Message: Hi Listeners,
I have one user, she wants to do TEM study of cultured Neurons on cover slip. She wants to preserve
elongated nerve processes. We can not go with suspension culture and make its pellets.
If any body could help me here.
TIA.

Ravi.

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From: oshel1pe-at-cmich.edu
Date: Fri, 17 Jul 2015 07:00:12 -0500
Subject: [Microscopy] Re: viaWWW:Wear pattern of used sputter target

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Ravi,

This is the normal glow pattern of a Denton Desk II in use. We'd need to
see a photo of the target itself when not it use. Top open, looking
directly at the target to get a good image.
If there are any holes in the target, especially in the area of the
plasma annulus, the target is toasted and needs to be replaced.

Phil

} Email: ravi.thakkar369-at-gmail.com
} Name: Ravi
}
} Title-Subject: [Filtered] Wear pattern of used sputter target.
}
} Message: We have Denton Desk II Sputter coater. An Attached is the image of glowing sputter target.
} Is it need to replaced or it has more lifespan to go on.
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

==============================Original Headers==============================
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From: oshel1pe-at-cmich.edu
Date: Fri, 17 Jul 2015 07:13:31 -0500
Subject: [Microscopy] Re: viaWWW:How to process cells grown on Cover slip

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Ravi,

No problem, you can flat-embed the cultured cells on the coverslip.
Process the coverslips + cells as you would if you had pellets. Probably
can use just glutaraldehyde, no formalin, since these are spread cells.
I'd also add 1% monomeric tannic acid to the glut and/or OsO4 to help
preserve the membranes.

Do the resin infiltration with a nutator or the like, but try to limit
the degrees of tilt (and slow speed), so you don't get the fluid
everywhere.
Go through to 100% resin as usual, then cut the bottom & cap off of a
BEEM capsule, invert over the cells, Carefully! fill with 100% resin -
don't get air bubbles! - and polymerize.
After polymerization, drop the coverslip + BEEM capsule in LN2, and the
capsule with pop off.
Trim and section.

Phil

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}
} Email: ravi.thakkar369-at-gmail.com
} Name: Ravi Thakkar
}
} Organization: Kansas State University
}
} Title-Subject: [Filtered] How to process cells grown on Cover slip for TEM.
}
} Message: Hi Listeners,
} I have one user, she wants to do TEM study of cultured Neurons on cover slip. She wants to preserve
} elongated nerve processes. We can not go with suspension culture and make its pellets.
} If any body could help me here.
} TIA.
}
} Ravi.
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: oshel1pe-at-cmich.edu
Date: Fri, 17 Jul 2015 07:37:08 -0500
Subject: [Microscopy] Re: viaWWW:Wear pattern of used sputter target

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ravi,

This is the normal glow pattern of a Denton Desk II in use. We'd need to
see a photo of the target itself when not it use. Top open, looking
directly at the target to get a good image.
If there are any holes in the target, especially in the area of the
plasma annulus, the target is toasted and needs to be replaced.

Phil

} Email: ravi.thakkar369-at-gmail.com
} Name: Ravi
}
} Title-Subject: [Filtered] Wear pattern of used sputter target.
}
} Message: We have Denton Desk II Sputter coater. An Attached is the image of glowing sputter target.
} Is it need to replaced or it has more lifespan to go on.
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

==============================Original Headers==============================
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From: microscopylistserver-noreply-at-microscopy.com
Date: Fri, 17 Jul 2015 07:43:48 -0500
Subject: [Microscopy] viaWWW:SEM of Trichomonas tenax

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Email: nsa2-at-leicester.ac.uk
Name: Natalie Allcock

Organization: University of Leicester

Title-Subject: [Filtered] SEM of Trichomonas tenax

Message: Hello Everybody,

What is the current thinking regarding conventional SEM of protozoa? I have some Trichomonas tenax
fixed in 2.5% glut that need processing for SEM (and TEM) and I was hoping to use my standard
procedure through ethanol/HMDS. Will this be adequate, or will critical point drying yield superior
results?

Also, what is the best method of transition? Does the sample need filtering, and I process the
filter? Would they adhere to a subbed coverslip, or will they all just wash off? If using HMDS, can
I process them in a centrifuge tube, and just sprinkle the dried sample onto a sticky tab? We have
some microporous specimen capsules that I use for critical point drying, but fear the protozoa are
too small, and there is not enough sample, to effectively retrieve them after processing.

If anyone does regular processing for TEM and has a reliable protocol for resin embedding protozoa,
that would also be very useful!

Any suggestions would be welcome, I look forward to hearing how many of you are out the office
enjoying the summer holidays.

Nat



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From: FMonson-at-wcupa.edu
Date: Fri, 17 Jul 2015 08:07:13 -0500
Subject: [Microscopy] Re: viaWWW:Wear pattern of used sputter target

Contents Retrieved from Microscopy Listserver Archives
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Ravi,

With a dubious target of 57mm, I, with fresh gloves, reemove it and lay it on a vertically oriented dissecting scope lamp. In a darkened room, one can easily detect pinhole defects in the anulus.

Hopefully helpful,

Fred

Frederick C Monson, PhD
Center for Microanalysis and Imaging, Research and Training (CMIRT)
West Chester University of Pannsylvania
West Chester, PA, 1938
610-738-0437
fmonson-at-wcupa.edu
________________________________________
X-from: oshel1pe-at-cmich.edu {oshel1pe-at-cmich.edu}
Sent: Friday, July 17, 2015 8:19 AM
To: Monson, Frederick

Ravi,

This is the normal glow pattern of a Denton Desk II in use. We'd need to
see a photo of the target itself when not it use. Top open, looking
directly at the target to get a good image.
If there are any holes in the target, especially in the area of the
plasma annulus, the target is toasted and needs to be replaced.

Phil

} Email: ravi.thakkar369-at-gmail.com
} Name: Ravi
}
} Title-Subject: [Filtered] Wear pattern of used sputter target.
}
} Message: We have Denton Desk II Sputter coater. An Attached is the image of glowing sputter target.
} Is it need to replaced or it has more lifespan to go on.
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: oshel1pe-at-cmich.edu
Date: Fri, 17 Jul 2015 08:13:35 -0500
Subject: [Microscopy] Re: viaWWW:How to process cells grown on Cover slip

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ravi,

No problem, you can flat-embed the cultured cells on the coverslip.
Process the coverslips + cells as you would if you had pellets. Probably
can use just glutaraldehyde, no formalin, since these are spread cells.
I'd also add 1% monomeric tannic acid to the glut and/or OsO4 to help
preserve the membranes.

Do the resin infiltration with a nutator or the like, but try to limit
the degrees of tilt (and slow speed), so you don't get the fluid
everywhere.
Go through to 100% resin as usual, then cut the bottom & cap off of a
BEEM capsule, invert over the cells, Carefully! fill with 100% resin -
don't get air bubbles! - and polymerize.
After polymerization, drop the coverslip + BEEM capsule in LN2, and the
capsule with pop off.
Trim and section.

Phil

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}
} Email: ravi.thakkar369-at-gmail.com
} Name: Ravi Thakkar
}
} Organization: Kansas State University
}
} Title-Subject: [Filtered] How to process cells grown on Cover slip for TEM.
}
} Message: Hi Listeners,
} I have one user, she wants to do TEM study of cultured Neurons on cover slip. She wants to preserve
} elongated nerve processes. We can not go with suspension culture and make its pellets.
} If any body could help me here.
} TIA.
}
} Ravi.
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: oshel1pe-at-cmich.edu
Date: Fri, 17 Jul 2015 08:43:47 -0500
Subject: [Microscopy] Re: viaWWW:SEM of Trichomonas tenax

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Nat,

I filter protozoas onto a membrane filter (pore size determined by the
critters, but anywhere from 0.45 ľm to 8 ľm).
First, sputter coat the filters on both sides, so you filter the beasts
onto a conductive surface.
Then add fix (1 - 1.25% glut); obviously in your case, just filter the
fixed critters.
Go through the dehydration series in whatever filter apparatus you have.
Then:
If HMDS, go through a EtOH:HMDS seriese 2:1, 1:1, 1:2 then 3 X 100% HMDS.
I find most protistans dry best at 60 deg C.

You can CPD the filters with critters, but some (sometimes most) of them
may come off in the CPD and be lost. Othertimes, this works fine.
Just be sure you know which side of the filter your critters are on -
the simplest way is to look at the pattern on the filter support, as it
will be embossed on the filter.

You might also try drying from tert-butyl alcohol. There's an article
about this in the May 2014 issue of Microscopy Today.

I never use microporous capsules, I find they shed particles and clog
CPD valves.

TEM: try processing with whatever your usual protocol is.

Protistans are so variable, you really have to experiment, or get a
known good protocol from someone who does your particular organism -
Trichomonas tenax, here.

From processing euglenoids, we find even congeneric taxa can vary
greatly in their processing requirements, for both SEM & TEM.

Phil

} Email: nsa2-at-leicester.ac.uk
} Name: Natalie Allcock
}
} Organization: University of Leicester
}
} Title-Subject: [Filtered] SEM of Trichomonas tenax
}
} Message: Hello Everybody,
}
} What is the current thinking regarding conventional SEM of protozoa? I have some Trichomonas tenax
} fixed in 2.5% glut that need processing for SEM (and TEM) and I was hoping to use my standard
} procedure through ethanol/HMDS. Will this be adequate, or will critical point drying yield superior
} results?
}
} Also, what is the best method of transition? Does the sample need filtering, and I process the
} filter? Would they adhere to a subbed coverslip, or will they all just wash off? If using HMDS, can
} I process them in a centrifuge tube, and just sprinkle the dried sample onto a sticky tab? We have
} some microporous specimen capsules that I use for critical point drying, but fear the protozoa are
} too small, and there is not enough sample, to effectively retrieve them after processing.
}
} If anyone does regular processing for TEM and has a reliable protocol for resin embedding protozoa,
} that would also be very useful!
}
} Any suggestions would be welcome, I look forward to hearing how many of you are out the office
} enjoying the summer holidays.
}
} Nat
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: ajhall-at-prairienanotech.com
Date: Fri, 17 Jul 2015 08:46:21 -0500
Subject: [Microscopy] Re: viaWWW:Wear pattern of used sputter target

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Dear Ravi,

The other replies have been very good- light will help show a pin-hole
in the target when viewed from the other side in a dark room. I wanted
to add a few points that might be helpful for other deposition systems
also. For thicker targets, a feeler gauge often used by woodworkers to
duplicate a profile can be used to help determine the depth of the
wear-groove. This gauge has a row of pins that slide when pushed and
match the profile of the item being pushed against. This is helpful in
harder to reach targets if the gauge can fit.

Often the mounting plate for the target is made of another material
(stainless steel or copper) and this will show up in EDS or other
analyses when the deposited film is analyzed if the wear track has
broken through the target sufficiently.

Finally, a good metals reclaimer (and sometimes the target supplier)
will be willing to pay for the remaining high purity metal target
"scrap." This may help in purchasing the replacement target.

Wishing you success in your work and research,
-Allen J. Hall
http://www.prairienanotech.com/

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From: ajhall-at-prairienanotech.com
Date: Fri, 17 Jul 2015 11:40:09 -0500
Subject: [Microscopy] viaWWW:Wear pattern of used sputter target

Contents Retrieved from Microscopy Listserver Archives
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Jim's right of course! A profile gauge, not a feeling gauge. (I use a
feeler gauge for other things on the chamber.)

--
-Allen J. Hall
http://www.prairienanotech.com/

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From: John.Mardinly-at-asu.edu
Date: Fri, 17 Jul 2015 15:02:45 -0500
Subject: [Microscopy] Scherzer

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OK, now that the baseball all-star game is over, and we did NOT get to see Max Scherzer pitch (hottest pitcher in major leagues-$210M contract), I am still burning with curiosity as to whether he may be related to Otto Scherzer. Wiki photographs reveal a startling physical resemblance. Any theories or actual knowledge out there?

John Mardinly, ASU




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From: microscopylistserver-noreply-at-microscopy.com
Date: Sat, 18 Jul 2015 07:44:07 -0500
Subject: [Microscopy] viaWWW:In situ S/TEM: Postdoctoral Research Position (ORNL)

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Ravi -

One addition to J.W. Taylor's suggestion: I use Wheaton's coverlip jars for the solvent and resin steps (and sometimes the entire process). To keep track of which surface the cells are on, I have all of the coverslips "facing" the same way, & I've used a diamond scribe to mark one side of each jar. It is easier for me to do the resin steps with the coverslips vertical - I get less damage to the cs this way.

http://wheaton.com/staining-jar-col-for-cover-slips-6-cs.html

Good luck!

Tamara

...................................................
Tamara Howard
Dept. of Cell Biology & Physiology
University of New Mexico
Albuquerque, NM


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Email: ravi.thakkar369-at-gmail.com
Name: Ravi Thakkar

Organization: Kansas State University

Title-Subject: [Filtered] How to process cells grown on Cover slip for TEM.

Message: Hi Listeners,
I have one user, she wants to do TEM study of cultured Neurons on cover slip. She wants to preserve
elongated nerve processes. We can not go with suspension culture and make its pellets.
If any body could help me here.
TIA.

Ravi.

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From advertisebz09faak-at-gmail.com Sat Jul 18 01:59:14 2015
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Email: unocicrr-at-ornl.gov
Name: Raymond Unocic

Organization: Center for Nanophase Materials Science Oak Ridge National Laboratory

Title-Subject: [Filtered] In situ S/TEM: Postdoctoral Research Position (ORNL)

Message: Dear Nestor

Is it possible to post a new postdoc position on the microscopy list server?

Direct Link:
https://recruiting.ornl.gov/sap/bc/webdynpro/sap/hrrcf_a_posting_apply?PARAM=cG9zdF9pbnN0X2d1aWQ9MDA1MDU2QjQzOTc3MUVENThBRTBENTlCRTc1NkQ0MjUmY2FuZF90eXBlPUVYVA%3d%3d&sap-client=010&sap-language=EN#

The Microscopy Group in the Center for Nanophase Materials Sciences (CNMS) at Oak Ridge National
Laboratory (ORNL) is seeking a highly motivated candidate to conduct microscopy research on energy
materials using novel in situ S/TEM techniques. The selected candidate will work with scientists and
users at the CNMS to develop in situ S/TEM methods and capabilities for operando studies of
nanomaterials, which includes the development and use of in situ liquid, electrochemical, and
gas-cell systems and developing data acquisition and analysis methodologies. This position will also
be closely associated with a collaborative and multidisciplinary team of scientists at ORNL’s Fluid
Interface Reactions, Structures and Transport Energy Frontier Research Center (FIRST-EFRC).
Major Duties/Responsibilities

• Conduct nanomaterials research using in situ TEM methods, which will include developing/optimizing
methodologies for operando studies in liquid and gas environments

• Develop advanced data acquisition and data analysis methods towards streamlining in situ studies

• Collaborate with approved users at the CNMS on in situ microscopy experiments

• Responsible for presenting and reporting research results and publishing scientific results in
peer-reviewed journals in a timely manner

• Ensure compliance with environment, safety, health and quality program requirements

• Maintain strong commitment to the implementation and perpetuation of values and ethics

Qualifications Required
• A PhD in Materials Science & Engineering, Chemistry, Physics, or closely related field completed
within the last 5 years • Strong background in aberration corrected STEM and EELS

• Hands-on practical expertise with in situ microscopy methods

• Background in big data analytics and simulations using MatLab and COMSOL modeling - National
Instruments data acquisition hardware, LabVIEW programming, and FPGA programming experience
considered a plus

• Excellent record of productive and creative research demonstrated by publications in peer-reviewed
journals

• Excellent written and oral communication skills and the ability to communicate in English to an
international scientific audience

• Ability to set priorities, multi-task, and adapt to ever changing needs with the proven ability to
function well in a fast-paced environment

• Ability to work both independently and in a collaborative team environment
Work Directions and Interfaces

Appointments will initially be for 24 months with a possibility of an extension of up to 12 months.
Initial appointments and extensions are subject to performance and availability of funding.

Please provide a list of publications when applying for this position. Three letters of reference
are required and can be uploaded to your profile or emailed directly to PSDrecruit-at-ornl.gov. Please
include the title of the position in the subject line.
This position will remain open for a minimum of 5 days after which it will close when a qualified
candidate is identified and/or hired.

We accept Word(.doc, .docx), Excel(.xls, .xlsx), PowerPoint(.ppt, .pptx), Adobe(.pdf), Rich Text
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vendors will not be accepted; these resumes will be deleted and the candidates submitted will not be
considered for employment.

If you have trouble applying for a position, please email ORNLRecruiting-at-ornl.gov.

Notice: If the position requires a Security Clearance, reviews and tests for the absence of any
illegal drug as defined in 10 CFR 707.4 will be conducted by the employer and a background
investigation by the Federal government may be required to obtain an access authorization prior to
employment and subsequent reinvestigations may be required.

If the position is covered by the Counterintelligence Evaluation Program regulations at 10 CFR 709,
a counterintelligence evaluation may include a counterintelligence-scope polygraph examination.

ORNL is an equal opportunity employer. All qualified applicants, including individuals with
disabilities and protected veterans, are encouraged to apply. UT-Battelle is an E-Verify Employer.

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From: David.Wilbur-at-tufts.edu
Date: Mon, 20 Jul 2015 09:24:39 -0500
Subject: [Microscopy] JEOL 840A SEM available (non-working)- No longer

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Hello Nat and everyone else!

Protists are notoriously variable things; different but closely-related strains can respond very differently to the same fixation protocol. So you might get good results the first time you try, or you might have to experiment. To answer your questions in order:

I usually use a CPD for SEM prep, and I've gotten good results with that. However, there are a few different types of CPD, some of which require careful operation. Thus, the results may depend both on the type of CPD and the operator. I've also used tert-butanol in a freeze-dryer with adequate results, although I've gotten better results in some cases with the CPD. I've never used HMDS but I've heard very good things about it.

For mounting, I've used both poly-L-lysine-coated coverslips (the round 12-mm types, which unfortunately tend to be expensive) and Isopore filters. Give the cells about an hour on the coverslip and they're stuck. Isopore filters don't require any treatment at all: I fix my cells in a Petri dish and just plunge them through the filter and that's enough. Of course you want to be careful not to apply back-pressure when removing the cartridge, handle anything with cells adhering to it gently, and keep it wet! A few seconds at most out of EtOH is fine, though.

As for TEM, I 'trap' my cells in 2% agarose after fixation. I do this by pipetting a shallow puddle of molten agarose onto a fresh slide (use a transfer pipette or a cut-off Gilson: narrow pipettes will clog!) and then pipetting 1-10 ľl of concentrated fixed cuture directly into the puddle, trying to suspend the cells directly in the middle of the water (agarose?) column. After the agarose sets, I cut out a ~1-mm cube around the cells, and do my dehydration and embedding with the cube. I'll typically get 4-6 cubes from a single fixation. One nice aspect of this protocol is that, for the resin-containing stages, the sample will float if it's not ready for the next change! I also have colleagues who instead spin down their cells and dehydrate and embed them 'free' in an Eppendorf tube, but my cultures are usually too sparse to deal with the amount of material one loses in that procedure.

Hope that helps -- please feel free to e-mail me if you need any clarification or further advice.

Cheers!
Aaron


Aaron A. Heiss, Ph.D.
Gerstner Scholar and Lerner-Gray Fellow
Eunsoo Kim Laboratory
Department of Invertebrate Zoology
American Museum of Natural History
Central Park West at 79th Street
New York, NY 10024 USA

212-769-5838
aheiss-at-amnh.org
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Email: nsa2-at-leicester.ac.uk
Name: Natalie Allcock

Organization: University of Leicester

Title-Subject: [Filtered] SEM of Trichomonas tenax

Message: Hello Everybody,

What is the current thinking regarding conventional SEM of protozoa? I have some Trichomonas tenax
fixed in 2.5% glut that need processing for SEM (and TEM) and I was hoping to use my standard
procedure through ethanol/HMDS. Will this be adequate, or will critical point drying yield superior
results?

Also, what is the best method of transition? Does the sample need filtering, and I process the
filter? Would they adhere to a subbed coverslip, or will they all just wash off? If using HMDS, can
I process them in a centrifuge tube, and just sprinkle the dried sample onto a sticky tab? We have
some microporous specimen capsules that I use for critical point drying, but fear the protozoa are
too small, and there is not enough sample, to effectively retrieve them after processing.

If anyone does regular processing for TEM and has a reliable protocol for resin embedding protozoa,
that would also be very useful!

Any suggestions would be welcome, I look forward to hearing how many of you are out the office
enjoying the summer holidays.

Nat



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From mike.sfsd4f564s6df45dsru-at-gmail.com Mon Jul 20 03:49:22 2015
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The JEOL 840 I offered last week is spoken for. I underestimated the interest, and I regret I cannot meet all requests. Please, no more inquiries.

Dave Wilbur

____________________________
David J. Wilbur, Ph.D.
Instrumentation Specialist
Department of Chemistry
Tufts University
62 Talbot Ave.
Medford, MA 02155
voice:    617-627-2163
Fax:    617-627-3443
email:    david.wilbur-at-tufts.edu


I have a JEOL JSM- 840A SEM, with Oxford ISIS EDS that has not worked for about 2 years. Before I send it to a scrapyard, I want to be sure it has no value to anyone else. About 2 years ago it developed a vacuum problem that resulted in serious oxidation of the diffusion pump oil. Even after cleaning the pumps and replacing the oil, I have been unable to achieve workable vacuum. Even before the vacuum problems the stigmators stopped working. The EDS was working until the SEM went down. I am certain that it is not economically feasible to resurrect the microscope, and I am offering it free to anyone that wants it, in whole or in part. Preference will be given to those wanting, and willing to cart away the largest portion. I am willing to ship small parts that can be safely packed and shipped by wrapping in a few layers of bubble wrap and putting in a medium sized box(at recipients expense, of course). Larger pieces must be picked up in Medford, MA , 5 miles north of Boston. I can provide assistance in loading. If you have any interest, please contact me off list.

____________________________
David J. Wilbur, Ph.D.
Instrumentation Specialist
Department of Chemistry
Tufts University
62 Talbot Ave.
Medford, MA 02155
voice:    617-627-2163
Fax:    617-627-3443
email:    david.wilbur-at-tufts.edu




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From: mdelann1-at-jhmi.edu
Date: Mon, 20 Jul 2015 10:30:54 -0500
Subject: [Microscopy] Job posting

Contents Retrieved from Microscopy Listserver Archives
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Hello Fellow Microscopists,
We have a position to fill here at the Johns Hopkins SOM Microscope
Facility. Microscopy Facility Specialist Req. number 67234. All interested
parties should apply with Human Resources:

https://hrnt.jhu.edu/jhujobs/jobsearch.cfm?searchCriteria=67234+



General Description

We seek a microscopy specialist talented in fluorescence/confocal microscopy
with emphasis on computer-based analysis. Prior experience with an image
quantitation package (e.g. Volocity, ImageJ, Imaris, Metamorph, MatLab) is
highly desirable. Strong analytical and organizational skills coupled with
strong interpersonal and communication skills (both oral and written) are
essential.

The primary duties and responsibilities of the job:
The primary duties of the candidate will be to train users on microscope
operation, and to train and provide image analysis and quantitation
services. Basic knowledge of cell biology is critical for communicating with
users. Helping users with troubleshooting and advising on specimen
preparation and interpretation may be needed as part of user services on
projects. Regular duties include maintaining microscope work areas and
include collecting and maintaining a library of protocols, manuals and
tutorials for users. With all duties, timely record-keeping (electronic &
written) are required.

With 4 other staff members, the candidate will provide user support at the
Johns Hopkins School of Medicine Microscope Facility. This facility provides
light, fluorescence and electron microscopy services to 350+ users annually
throughout Johns Hopkins using 17+ advanced microscopes and sophisticated
preparatory equipment. Because of the diversity of equipment within the
facility, the candidate must display resourceful independence and a
willingness to learn. Ultimately, the candidate is expected to become an
expert resource for image quantitation, as well as a resource for using,
analyzing, and troubleshooting experiments with fluorescence/confocal
microscopy spanning generic and highly specialized applications.

Qualifications

BS/BA in biological sciences, chemistry, or related field required. At least
three years of relevant work experience is required. Master's degree, with
related graduate research, may substitute for experience to the extent
permitted by the JHU equivalency formula.

JHU Equivalency Formula: 30 undergraduate degree credits (semester hours)
or 18 graduate degree credits may substitute for one year of experience.
Additional related experience may substitute for required education on the
same basis. For jobs where equivalency is permitted, up to two years of
non-related college course work may be applied towards the total minimum
education/experience required for the respective job.

NOTE: The successful candidate(s) for this position will be subject to a
pre-employment background check.

If you are interested in applying for employment with The Johns Hopkins
University and require special assistance or accommodation during any part
of the pre-employment process, please contact the School of Medicine HR
Divisional Office at 410-955-2990. For TTY users, call via Maryland Relay or
dial 711.

During the Influenza ("the flu") season, as a condition of employment, The
Johns Hopkins Institutions require all employees who provide ongoing
services to patients or work in patient care or clinical care areas to have
an annual influenza vaccination or possess an approved medical or religious
exception. Failure to meet this requirement may result in termination of
employment.

The pre-employment physical for positions in clinical areas, laboratories,
working with research subjects, or involving community contact requires
documentation of immune status against Rubella (German measles), Rubeola
(Measles), Mumps, Varicella (chickenpox), Hepatitis B and documentation of
having received the Tdap (Tetanus, diphtheria, pertussis) vaccination. This
may include documentation of having two (2) MMR vaccines; two (2) Varicella
vaccines; or antibody status to these diseases from laboratory testing.
Blood tests for immunities to these diseases are ordinarily included in the
pre-employment physical exam except for those employees who provide results
of blood tests or immunization documentation from their own health care
providers. Any vaccinations required for these diseases will be given at no
cost in our Occupational Health office.

Note: Job postings are updated daily and remain online until filled. See
more in our FAQ.

EEO Is The Law
Applicants to and employees of Johns Hopkins are protected under Federal
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From: mail :      mail-at-ns.microscopy.com
Date: Mon, 20 Jul 2015 16:33:28 -0500
Subject: viaWWW:Stage error on Hitachi S-3500N SEM.

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Name: Ravi

Title-Subject: [Filtered] Stage error on Hitachi S-3500N SEM.

Message: Dear All,

We have Hitachi S-3500N SEM. We are facing one strange error "The moter is wrong or the hardware
limit is working: please close the system". (We didn't go the extreme with stage movement in any of
the axis) I checked the all cable connected to stage all are fit well.





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From: mail :      mail-at-ns.microscopy.com
Date: Mon, 20 Jul 2015 16:54:21 -0500
Subject: Fwd: [Filtered] MicroscopyListserverviaWWW:

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Email: sbarlow-at-mail.sdsu.edu
Name: Steve Barlow

Organization: SDSU EM Facility

Title-Subject: [Filtered] M&M 2015 room to share?

Message: Dear all M&M 2015 attendees in Portland

At the last minute my graduate assistant decided he would attend the
upcoming meeting in Portland, his first M&M meeting.

Is there anyone with a room/housing that would consider allowing this grad
student to share their space and the cost?

Please contact me offline at sbarlow-at-mail.sdsu.edu

Thanks for your consideration

Steve

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Director, EM Facility/ SDSU Biology
5500 Campanile Drive MC-4614
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From: mail :      mail-at-ns.microscopy.com
Date: Mon, 20 Jul 2015 17:00:48 -0500
Subject: viaWWW:&M 2015 room to share?

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Email: sbarlow-at-mail.sdsu.edu
Name: Steve Barlow

Organization: SDSU EM Facility

Title-Subject: [Filtered] M&M 2015 room to share?

Message: Dear all M&M 2015 attendees in Portland

At the last minute my graduate assistant decided he would attend the
upcoming meeting in Portland, his first M&M meeting.

Is there anyone with a room/housing that would consider allowing this grad
student to share their space and the cost?

Please contact me offline at sbarlow-at-mail.sdsu.edu

Thanks for your consideration

Steve

--
Steven Barlow, Ph.D.
Director, EM Facility/ SDSU Biology
5500 Campanile Drive MC-4614
San Diego, CA 92182-4614

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From: zaluzec-at-aaem.amc.anl.gov
Date: Mon, 20 Jul 2015 22:11:07 -0500
Subject: [Microscopy] Administrivia: Listserver Address oddities

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Colleagues

I've just updated my email client and it appears to have changed how forward
mail address of WWW site submissions is delivered. You may see messages
coming from "mail-at-microscopy.com" instead of "microscopylistserver-noreply".
I will attempt to fix this, but it may take some time. Unfortunately and the next several weeks
are very busy for me. So accept my apologies in advance. I will get it fixed
but the time line is unknown at this point.

Cheers,

Nestor
Your Friendly (and Perplexed) Neighborhood SysOp




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From: Rosemary.White-at-csiro.au
Date: Tue, 21 Jul 2015 01:25:36 -0500
Subject: [Microscopy] *sort-of commercial post - a kickstarter about lights*

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear all,

I spotted this kickstarter proposal developing very small but rather
bright lightsources and wondered how it compared with others currently
available. Seems a convenient way of illuminating samples on a dissecting
microscope, though it's really designed for photographers. The peak
wavelength lights (red, green, blue, amber) look interesting too.

https://www.kickstarter.com/projects/pinocchiobarrique/relio-your-little-pe
rsonal-sun/description

Any comments?

thanks,
Rosemary

(keep forgetting that html format is always rejected by this listserv...)

Dr Rosemary White
CSIRO Black Mountain
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
E rosemary.white-at-csiro.au



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10, 45 -- Subject: *sort-of commercial post - a kickstarter about lights*
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From: apamatos-at-gmail.com
Date: Wed, 22 Jul 2015 17:59:11 -0500
Subject: [Microscopy] Society for Ultrastructural Pathology Congress - Ultrapath XVIII

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I've been very, very pleased with a pair of IKEA Jansjo lamps (60cm version with base) for dissection microscope illumination. Homogeneous beam, high output, cheaper than anything else (Ł10 GBP).

Ben
________________________________________
X-from: Rosemary.White-at-csiro.au [Rosemary.White-at-csiro.au]
Sent: 21 July 2015 07:42
To: Ben Micklem

Dear all,

I spotted this kickstarter proposal developing very small but rather
bright lightsources and wondered how it compared with others currently
available. Seems a convenient way of illuminating samples on a dissecting
microscope, though it's really designed for photographers. The peak
wavelength lights (red, green, blue, amber) look interesting too.

https://www.kickstarter.com/projects/pinocchiobarrique/relio-your-little-pe
rsonal-sun/description

Any comments?

thanks,
Rosemary



==============================Original Headers==============================
10, 31 -- From ben.micklem-at-pharm.ox.ac.uk Tue Jul 21 02:40:00 2015
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10, 31 -- Subject: RE: [Microscopy] *sort-of commercial post - a kickstarter about
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From mike.newsletter30yfrae-at-gmail.com Tue Jul 21 14:30:12 2015
Return-Path: {mike.newsletter30yfrae-at-gmail.com}
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for {microscopylistserverarchive5-at-microscopy.com} ; Tue, 21 Jul 2015 14:30:10 -0500
Message-ID: {6842D45F.AB6A819B-at-gmail.com}

Dear Colleagues and Friends,

The Society for Ultrastructural Pathology is organizing its XVIII Congress. This time it will be held in Lisbon, Portugal from July 11 to 15, 2016.

The Congress will be preceded by an introductory course on Ultrastructural Pathology organized by our senior and experienced Colleague Joseph Lloreta-Trull, from Hospital del Mar in Barcelona.

This Congress will focus primarily in ultrastructural diagnosis. Sessions of this applied branch of ultrastructural pathology will be dedicated to the main diagnostic areas for which electron microscopy is important.

A comprehensive set of sessions and presentations will cover both more fundamental research and new technical advances, including super-resolution microscopy, important for Ultrastructural Pathology as a whole.

It is our great pleasure to invite you to join us at UltrapathXVIII in the pleasant, friendly and inexpensive environment of Lisbon, and in the superb facilities of the Gulbenkian Foundation, where the Congress will be held.

Further information about this meeting can be found in the Congress web site Congress-at-UltrapathXVIII.org

On behalf of the organizing committee, I am looking forward to welcoming you to Lisbon in June 2016.

With kind regards,

From the Organizing Committee,

A.P. Alves de Matos
Chair of UltrapathXVIII




==============================Original Headers==============================
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13, 34 -- Subject: Society for Ultrastructural Pathology Congress - Ultrapath XVIII
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From: apamatos-at-gmail.com
Date: Wed, 22 Jul 2015 18:25:07 -0500
Subject: [Microscopy] CORRECTION - Society for Ultrastructural Pathology Congress -

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The Congress will be preceded by an introductory course on
Ultrastructural Pathology organized by our senior and experienced
Colleague Joseph Lloreta-Trull, from Hospital del Mar in Barcelona.

This Congress will focus primarily in ultrastructural diagnosis.
Sessions of this applied branch of ultrastructural pathology will be
dedicated to the main diagnostic areas for which electron microscopy is
important.

A comprehensive set of sessions and presentations will cover both more
fundamental research and new technical advances, including
super-resolution microscopy, important for Ultrastructural Pathology as
a whole.

It is our great pleasure to invite you to join us at UltrapathXVIII in
the pleasant, friendly and inexpensive environment of Lisbon, and in the
superb facilities of the Gulbenkian Foundation, where the Congress will
be held.

Further information about this meeting can be found in the Congress web
site Congress.UltrapathXVIII.org

On behalf of the organizing committee, I am looking forward to welcoming
you to Lisbon in June 2016.

With kind regards,

From the Organizing Committee,

A.P. Alves de Matos
Chair of UltrapathXVIII

==============================Original Headers==============================
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From: microscopy.listserver-at-gmail.com
Date: Fri, 24 Jul 2015 12:52:24 -0500
Subject: [Microscopy] viaWWW:Open permanent position in Cryo-EM

Contents Retrieved from Microscopy Listserver Archives
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Email: jhyun-at-gatan.com
Name: John Hyun

Organization: Gatan, Inc.

Title-Subject: [Filtered] EELS and EFTEM Training School October 2015

Message:
October 13-16, 2015, Pleasanton, CA USA

This course reviews the basic theory and practice of EELS imaging and
analysis in the TEM, but its main emphasis is on practical techniques,
optimum deployment of Gatan hardware and software systems, and advanced
EELS and EFTEM applications. Some prior experience with EELS, EFTEM, and
Gatan systems is recommended, as is a good familiarity with TEM/STEM
instrumentation and techniques. By the end of the course, participants
can expect to know how best to optimize the performance of their EELS
hardware as well as their EELS and EFTEM experimental setups in order to
capture and extract the maximum amount of information from their TEM
samples.

Topics include:

•Fundamentals of EELS and energy-filtered imaging in TEM
•Principles of operation of Gatan EFTEM and EELS systems
•Optimization of EFTEM and EELS data acquisition
•Quantification of elemental composition
•Other information provided by EFTEM/EELS and how best to extract it
•Use of EELS signals to form maps of elemental and chemical composition
•EFTEM and STEM EELS spectrum imaging techniques
•Identification of material phases via EELS fine structure mapping
•Applications to biological and physical science specimens

Online Registration:
http://www.gatan.com/company/events/eels-eftem-analysis-training-school-october-2015



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From mike.sfsd4f564s6df45dsiapuf-at-gmail.com Fri Jul 24 11:23:52 2015
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Email: mike.marko.em-at-gmail.com
Name: Mike Marko

Organization: Wadsworth Center

Title-Subject: [Filtered] Open permanent position in Cryo-EM

Message: A permanent Staff Scientist position in cryo-EM is available at
Wadsworth Center, NY State Department of Health, Albany, NY. We seek
applications from highly motivated individuals specializing in various
aspects of high-resolution electron microscopy. Responsibilities for
this position include the maintenance of high-end electron microscopes
and ancillary equipment, cryo-specimen preparation, data collection, and
management. The new hire will be expected to actively support
grant-funded projects and the development of new grant applications.
Salary will be commensurate with experience.

We have excellent institutional support and infrastructure, including a
state-of-the-art JEOL 3200 FSC/PP microscope with an in-column energy
filter and a K2 Summit direct-electron detector camera. Interested
applicants should submit a cover letter describing their relevant
experience, curriculum vitae, and contact information for at least three
references to wcphgc-at-health.ny.gov, with "3D-EM" in the subject line.
Applications will be accepted until the position is filled and reviewed
as they are received. AA/EOE.


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Alternate: 1-530-NES-TORZ (1-530-637-8679) has Voice Mail
Email: Zaluzec-at-Microscopy.Com

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From: microscopy.listserver-at-gmail.com
Date: Fri, 24 Jul 2015 15:52:22 -0500
Subject: [Microscopy] viaWWW: Hitachi S-4800 SEM Software

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Email: ahinojos2-at-miners.utep.edu
Name: Alejandro Hinojos

Organization: University of Texas at El Paso

Title-Subject: [Filtered] SEM Software

Message: Hi everybody,
We have a problem down here at the University of Texas at El Paso. Some
careless user, who has forfeited his rights to the tool, has uninstalled
the PC-SEM on the computer for a Hitachi S-4800. To our knowledge the
tool isn't damaged, but we cant recover the software. Does anyone have
the PC_SEM software for a Hitachi S-4800 or do they know where to get
it. We would be willing to cover any charges if you mail an installation
package to us. We have great tool indisposed right now acting
essentially as an expensive showpiece. If anyone can help that would be
greatly appreciated. E-mail me if there are any additional questions
about the computer or the tool.

Thanks in advance,
Alejandro Hinojos

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From: ALawrence-at-i2at.msstate.edu
Date: Sat, 25 Jul 2015 04:28:52 -0500
Subject: [Microscopy] M&M meeting help

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Greetings
The 2015 Microscopy and Microanalysis meetings are about a week away and we could still use some volunteers to help with tasks not covered by our student bursaries.  If you would like to donate a little time to help keep things running smoothly, please contact me or check by the Volunteer Office during the meetings.
 
Thanks and see everyone in Portland,
 
Amanda
 
Amanda Lawrence
Outreach Coordinator/Research Associate
Institute for Imaging and Analytical Technologies
Mississippi State University


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From: mail :      mail-at-ns.microscopy.com
Date: Mon, 27 Jul 2015 14:32:51 -0500
Subject: Fwd: [Filtered] MicroscopyListserverviaWWW:TECNAI OSIRIS HT Problem

Contents Retrieved from Microscopy Listserver Archives
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X-from: 12hy1-at-queensu.ca

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Email: 12hy1-at-queensu.ca
Name: Hongbing Yu

Organization: Queen's University

Title-Subject: [Filtered] TECNAI OSIRIS

Message: Hello Everyone,
We have a FEI TECNAI OSIRIS TEM in our lab. The high tension of the microscope has turned off
suddenly without any warning or error information for several times during our operation even
thought the vacuum and the supplies were all good. And we are not allowed to turn on high tension
after that. Does anyone has similar experience or know what is the reason and how to avoid that?
Thanks
Your sincerely
Hongbing Yu


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From: vray-at-partbeamsystech.com
Date: Mon, 27 Jul 2015 15:03:22 -0500
Subject: [Microscopy] Re: Fwd: [Filtered] MicroscopyListserverviaWWW:TECNAI OSIRIS HT Problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Hongbing,

Could you elaborate what do you mean by saying "we are not allowed to
turn on high tension after that?" Do you mean that functionality is
disabled, or do you mean that somebody forbid you to do so?

Valery Ray - also with AIM Lab, UMDCP
=======================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844, USA
Phone: +1-978-296-5063
E-Mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com
UMD E-Mail: vray-at-umd.edu

On 7/27/2015 3:36 PM, mail wrote:
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} Email: 12hy1-at-queensu.ca
} Name: Hongbing Yu
}
} Organization: Queen's University
}
} Title-Subject: [Filtered] TECNAI OSIRIS
}
} Message: Hello Everyone,
} We have a FEI TECNAI OSIRIS TEM in our lab. The high tension of the microscope has turned off
} suddenly without any warning or error information for several times during our operation even
} thought the vacuum and the supplies were all good. And we are not allowed to turn on high tension
} after that. Does anyone has similar experience or know what is the reason and how to avoid that?
} Thanks
} Your sincerely
} Hongbing Yu
}
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From: js51-at-princeton.edu
Date: Mon, 27 Jul 2015 15:51:49 -0500
Subject: Fwd: [Filtered] MicroscopyListserverviaWWW:TECNAI OSIRIS HT Problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello,

I would first check the SF6 pressure in the gun to make sure it is 6 bars. You can also look at the HTI board located in the Power Cabinet to check for indicator LEDs. Let me know if any of the LEDs are on and I can tell you possible issues. Did you hear any sounds just before the high tension shut off.

John

-----Original Message-----
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Sent: Monday, July 27, 2015 4:17 PM
To: John J. Schreiber

X-from: 12hy1-at-queensu.ca

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Email: 12hy1-at-queensu.ca
Name: Hongbing Yu

Organization: Queen's University

Title-Subject: [Filtered] TECNAI OSIRIS

Message: Hello Everyone,
We have a FEI TECNAI OSIRIS TEM in our lab. The high tension of the microscope has turned off suddenly without any warning or error information for several times during our operation even thought the vacuum and the supplies were all good. And we are not allowed to turn on high tension after that. Does anyone has similar experience or know what is the reason and how to avoid that?
Thanks
Your sincerely
Hongbing Yu


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From: leunissen-at-aurion.nl
Date: Thu, 30 Jul 2015 17:56:28 -0500
Subject: [Microscopy] Re: epoxy polymerisation at lower temperatures

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello everyone,

I have a TIFF file that I’d like to import into Digital Micrograph using the File } } Import Data command. I know the pixel size of my image but I’m not sure about the type of the data (integer, RGB, etc.). I have a grayscale micrograph that I would like to convert to a DM3 format to run all my plugins in DM, but I keep getting errors about the import or it appears as distorted noise.

Does anyone have a suggestion for how to interpret the TIFF file format so that it can be imported? Thanks!

______________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate

Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999 MSIN:K8-87
Richland, WA 99352

Tel: +1-509-371-7123
steven.spurgeon-at-pnnl.gov
www.stevenspurgeon.com {http://www.stevenspurgeon.com/}
www.pnnl.gov {http://www.pnnl.gov/}


==============================Original Headers==============================
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From mike.sfsd4f564s6df45dsigeti-at-gmail.com Tue Jul 28 00:32:41 2015
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Message-ID: {F4275F21.A798FF6B-at-gmail.com}

Assistant Research Scientist (JOB# 11220)
Arizona State University
LeRoy Eying Center for Solid State Science
http://le-csss.asu.edu/node/355

The LeRoy Eyring Center for Solid State Science (LE-CSSS) at Arizona State University
invites applications for an Assistant Research Scientist to work in the John M. Cowley
Center for High Resolution Electron Microscopy. This is a full-time, benefits eligible,
non-tenure track position renewable on an annual basis contingent upon satisfactory
performance, availability of resources, and the needs of the university. Anticipated start
date is September 28, 2015.

The successful candidate will be expected to operate a state-of-the-art Electron
Microprobe, working in an interdisciplinary research environment, assisting users from
many academic departments, including those within the College of Liberal Arts and
Sciences and the Fulton School of Engineering. Duties will primarily include operation,
troubleshooting and maintaining the electron microprobe, training others to operate the
microprobe independently. Opportunities exist for collaborative within these academic
units including the School of Earth and Space Exploration and independent research.

Minimum qualifications include: a Ph.D. in Geological Sciences, Chemistry, Materials
Science, or a related field by the time of appointment; expertise with running an electron
microprobe, expertise in processing micro-analytical data and preparing samples for
electron microprobe analysis. Candidates must demonstrate effective verbal and
written communication and the ability to work with a large number of scientists.
Candidate must demonstrate the ability to develop new microprobe techniques and
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Desired qualifications include: demonstrated expertise in use of an electron microprobe
to analyze chemically complex materials, expertise with analytical software (Donovan's
Probe for EPMA) and an active research program in earth sciences, planetary sciences,
solid state chemistry or materials science.

To apply, please send a single pdf file containing a letter of application, a CV with
publication list, and the names and contact information of three professional references
to csss-at-asu.edu. Electronic applications are strongly encouraged, but hard copy
applications will be considered if sent to:

Chair of the Electron Microprobe Search Committee
LeRoy Eyring Center for Solid State Science, PO Box 8717014,
Arizona State University, Tempe, AZ 85287-1704

Initial review of applications will begin August 10, 2015; if not filled, applications will be
reviewed weekly thereafter until the search is closed. Background check is required for
employment.

Arizona State University is a VEVRAA Federal Contractor and an Equal
Opportunity/Affirmative Action Employer. All qualified applicants will be considered
without regard to race, color, sex, religion, national origin, disability, protected veteran
status, or any other basis protected by law.
https://www.asu.edu/aad/manuals/acd/acd401.html https://www.asu.edu/titleIX/










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From advertise.bz222ev-at-gmail.com Tue Jul 28 20:59:52 2015
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Hello all,

I wonder if there is any historical information in the EM community regarding polymerization of epoxy resin at temperatures lower than 60-70°C. Is it possible to get there by modifying the composition? One would expect so, but expectations are not always workable or realistic.…
I know I could go the acrylate path.

Thank you,

Jan Leunissen
Dunedin, New Zealand



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From benny0439655322345345ykier-at-gmail.com Thu Jul 30 02:24:19 2015
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Thank you all for your answers, the list provides such a wealth of knowledge.

Hope to see you in Portland,

Jan Leunissen
Dunedin, New Zealand

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From: microscopy.listserver-at-gmail.com
Date: Thu, 30 Jul 2015 20:58:55 -0500
Subject: [Microscopy] viaWWW:rigaku americas corporation XRM Product Specialist

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Message: Rigaku Americas Corporation, a leading worldwide supplier of
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From: microscopy.listserver-at-gmail.com
Date: Thu, 30 Jul 2015 20:59:40 -0500
Subject: [Microscopy] viaWWW:Particle size distribution measurement

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From: microscopy.listserver-at-gmail.com
Date: Tue, 4 Aug 2015 23:25:56 -0500
Subject: [Microscopy] viaWWW:LEO/Zeiss SmartSEM macros

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi All
This yearšs Family Affair for delegates families and friends is Wednesday
afternoon August 5.

As well as microscopic explorations of materials and metals and a visitor
from NASA, I have a few Foldscopes - origami microscopes.

The Solve the Mystery to take down to the Exhibitoršs Hall
Secret Agent, James B Atom, has another message for Headquarters. If you
remember last year he wrote it on a Focused Ion Beam so that it could only
be read using a scanning electron microscope. The message last year was
łNever Trust and Atom, They make up everything.˛
This yearšs task should you choose to accept it is another message written
on a FIB in four pieces. When you have read it, you take your piece to
Headquarters (the Outreach Booth) where it will be assembled on a white
board.

Best wishes
Elaine


Dr. Elaine C. Humphrey
Lab Manager and STEHM Technologist
Advanced Microscopy Facility
Bob Wright Science Centre A015
University of Victoria, Canada
Lab: 250-853-3968
cell: 250-886-2068
website: http://www.stehm.uvic.ca





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Email: gary-at-gaugler.com
Name: Dr Gary Gaugler

Title-Subject: [Filtered] LEO/Zeiss SmartSEM macros

Message: Hello Listers:

I'd really like to find some LEO/Zeiss users who are way more versed
in SmartSEM macros than myself. I'm trying to make a macro to take
scans with scan speed and line integration values according
to specific store resolutions. This seemed pretty straightforward
but it got real problematic quickly.

Image storing is using line integration for noise reduction,
and depending on the store resolution, the scan speed and line
integration N are changed to result in about a one minute total
scan time for each store resolution. The macro I have thus far is:

Macro Name : photo2
Version 1.0
/* GDG July 2015 */
Unfreeze All
Freeze on = End Frame
If : Store resolution = 3072 * 2304 Is True
Line Int.
N= 8
Scan Speed 5
EndIf Statement
If : Store resolution = 2048 * 1536 Is True
Line Int.
N= 6
Scan Speed 6
EndIf Statement
If : Store resolution = 1024 * 768 Is True
Line Int.
N= 7
Scan Speed 8
EndIf Statement
If : Store resolution = 512 * 384 Is True
Line Int.
N= 12
Scan Speed 9
EndIf Statement
End Macro PHOTO2

I have a drop down Menu for Store Resolution but I cannot figure how
to feed this into the macro before the first If statement. I tried Else
and other decision statements but this macro is close to working. If I
set the Store Resolution in the Scanning tab and then just run the macro,
it works fine. But I'm looking for a way to specify the resolution at
the beginning and have that fed into the Photo2 macro.

Does anyone have any suggestions about how to accomplish this task?
All inputs are appreciated. TIA.

gary g.


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From: microscopy.listserver-at-gmail.com
Date: Wed, 5 Aug 2015 17:11:45 -0500
Subject: [Microscopy] viaWWW:ISI-DS-130 service manual request

Contents Retrieved from Microscopy Listserver Archives
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Email: gcat-at-udel.edu
Name: Glenn

Organization: University of Delaware

Title-Subject: [Filtered] ISI-DS-130 service manual request

Message: Hi,

Does anyone have an electronic copy of the service manual for an
ISI-DS-130 scanning electron microscope? Does such a manual exist?

I am interested in tuning up a unit and need to know the reference
voltages for all of the test points.

Thanks!

-Glenn

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From: microwink-at-gmail.com
Date: Fri, 7 Aug 2015 11:50:14 -0500
Subject: [Microscopy] Thermo Fisher Scientific Microlab 350 AES/XPS for auction

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello All,

I have an unusual request for our machine. It seems we've hit more than our fair share of snags with our operating system and LEO software and we're hoping that someone on the listserver can help us out. What we would like to do is get a hold of a hard-drive disc image of a working LEO 1550 that is still using the old/non-upgraded plinth system.

Currently, we are running Windows 98 (ya, really..) and LEO 32 software version 2.03, patch f. We had a hard drive malfunction on us about 6 months ago and tried to install a replacement from scratch. We were able to get a hold of old IDE drives, install Win98, install LEO-32, but not without a lot of hunting for drivers and updates of files. In the end, the software was seemingly working. We were able to image and run EDS for about a month. Then one day the software crashed and hasn't been the same since.

Sorry for the sob story, but if there's any chance we can get a disc image, any and all sensitive data/photos may be removed (I wouldn't have any need for it I'm sure), thought this shot in the dark couldn't hurt. Also, if you know of any other labs that might have a 1550, that maybe don't subscribe here, please let us know so we can get in touch with them. Of course compensation isn't out of the question, but hopefully of a reasonable manner.

Thank you!

-Andrew


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From mike.sfsd4f564s6df45dsxheuu-at-gmail.com Fri Aug 7 08:28:27 2015
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Hello listserv subscribers,

The Nanoscale Characterization and Fabrication Laboratory at Virginia
Tech is preparing to auction off our Thermo Fisher Microlab 350
Auger/XPS system. Details of the system are below. We are looking for
parties who may be interested in bidding for this unit, so please
contact me offline for more details and pictures if the AES is of
interest to you. We will also be auctioning a Cameca Atomika SIMS,
details of which will be posted to the SIMS listserv.

Description:
The Thermo Fisher Scientific (formerly VG Scientific) Microlab 350 is
a multi-purpose lab instrument with capability for both Auger Electron
Spectroscopy (AES) and XPS (X-ray Photoelectron Spectroscopy). The
chamber is optimized for Auger analysis – using a field-emission
electron source. Sample sizes are limited to about 15mm X 15mm X 7mm
due to the sample holders used and the method of introducing samples
into the analysis chamber. The system also has a dual-anode (Mg/Al)
achromatic X-ray source for XPS on large spots (effective analysis
area of several mm X several mm). There is an ion gun for sputter
depth profiling, although the ion gun is optimized for Auger and is
not for depth profiling for XPS analysis due to the large spot
required. The system has a motorized, 5-axis stage. The system has a
standard ion pump for pumping the main chamber and is equipped with a
turbo pump for pumping the load lock and differentially pumping the Ar
gas line.

Details:
1. Equipment Manufacturer (OEM): Thermo Fisher Scientific (formerly VG
Scientific)

2. Tool Model: Microlab 350 AES/XPS

3. Tool Description: Microlab 350 can perform Auger Electron
Spectroscopy (AES) and XPS (X-ray Photoelectron Spectroscopy) or ESCA
(Electron Spectroscopy for Chemical Analysis). AES is performed using
a field-emission electron source. XPS uses a dual anode (Mg/Al) large
spot, achromatic X-ray source.

4. Date of Manufacture: April 2001

5. Entity Code / CEID (if applicable): AES22

6. Sample type (wafer, solid, gas, liquid): Wafer pieces and other solid samples

7. Sample dimensions: Max. size of ~15mm X 15mm X 7mm (thickness)

8. Vendor Serial #A1105

9. Operating System and Software Version: Windows XP Professional and
Thermo Avantage 3.51 Build 02148 (Installed 2007)

10. Location: Blacksburg, VA 24060

11. Operational Status: Inoperable when moved into storage. All parts
and pieces other than the water chiller are included. It has been over
six months since a beam was successfully generated on the system.
Vacuum is in good working order and system is currently under vacuum.
While we suspect this system can be brought into fully functioning
order again, we are advertising this as parts only.

12. Electrical Power Configuration: 230V, 40A, single phase

13. Benchtop or standalone? Standalone

14. Sample Loading Configuration (load-lock, robot, liquid sample
introduction system, etc.): Load lock for pumping down and then
samples are manually introduced by means of a transfer rod and “wobble
stick” arm

Again, please contact me directly for additional information including
space and facilities requirements, pictures, and details regarding the
auction process.

Thanks,
Chris Winkler

Senior Research Associate
Nanoscale Characterization and Fabrication Laboratory
Institute for Critical Technology and Applied Science
Virginia Tech
crwinkler-at-vt.edu
(540) 200-9511


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21, 29 -- Subject: Thermo Fisher Scientific Microlab 350 AES/XPS for auction
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From: leunissen-at-aurion.nl
Date: Mon, 10 Aug 2015 15:21:31 -0500
Subject: [Microscopy] collected answers re "Epoxy Polymerisation at Lower Temperatures"

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

We have an old (circa 2000) LEO 1450VP SEM that we need to get rid of
fast. It is in good working condition. We have purchased a new Hitachi
SEM and we need to get the old machine out of here. We have 3 options,
either find an institution that will buy it from us, at a price to be
negotiated, or find a scientific research organization, preferably in
an under-developed country, that we could donate it to provided they
pay for the shipping. Or we could call a metals recycler and have them
haul it away as junk. That seems like a shame since the machine is
working.

It has a tungsten filament, turbomolecular pump, has conventional ET
SE detector, VPSE and BSD. It has the variable pressure option. The
machine has been under a Zeiss service contract until a few months
ago. NO analytical instruments, no X-ray EDS, etc. The machine is
based on a Win 98 PC. Machine comes with a water chiller. SEM was used
exclusively for zoological research.

Direct any inquiries to:
Scott Serata
California Academy of Sciences
SEM Lab
55 Music Concourse Dr
San Francisco, CA 94118

scottserata-at-gmail.com
(415) 724-4807

Thanks!

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From hanja07656515151fuia-at-gmail.com Sun Aug 9 03:04:13 2015
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Hello all,

a summary of the answers I received on/off list regarding my question whether it is possible to polymerise epoxy resins at lower temperature than commonly applied.


Thanks everyone, it was good to have the opportunity to discuss this issue at M&M in Portland!

Jan Leunissen,
(Back in snowy Dunedin, New Zealand)

original message:

Hello all,

I wonder if there is any historical information in the EM community regarding polymerization of epoxy resin at temperatures lower than 60-70°C. Is it possible to get there by modifying the composition? One would expect so, but expectations are not always workable or realistic.…
I know I could go the acrylate path.

Thank you,

Jan Leunissen
Dunedin, New Zealand

———

I have personally used MBond 610 cured at room temperature for manual polished microscopy samples without any problems whatsoever. You only need to keep it glued for at least 24 hours for the resin to cure fully at room temperature.
Regards,
Debangshu Mukherjee | MatSE PhD Candidate, Penn State
MRSEC Center for Nanoscale Science | T: (617) 501-7316
N-303 Millennium Science Complex, University Park, PA

———

I always had the opinion that “historical” (practical) fact finding by the “old guys” told about the beneficial effect of polymerizing (at least starting polymerization) epoxy resins at lower temperatures. This ended up in the “classical” polymerization of epoxy blocks (EPON 812) 35-37° / 45° / 60-65° for 12 h. each.
When I digged into the original publication of LUFT 1961 (*) I found the following:

“…..Moreover, according to Lee and Neville (1957), the amount of cross-linkage can be modified further to some extent by varying the temperature of the curing cycle. Thus low temperatures are said to favor a linear polymer with fewcross-linkages. Lee and Neville state further that once the molecular architecture of the gelled resin is established, it is less likely to be influenced by subsequent higher temperatures, which are, nevertheless, necessary to increase the degree of cure. For purposes of tissue embedding, a cool initial incubation period might be useful to evaporate off the propylene oxide without boiling (b.p. 35-37°C.).
In view of the arguments presented by Lee and Neville (1957), a three-stage curing program was chosen with incubation at 35 °, 45 °, and 60°C. for about 12 hours at each temperature. The resulting resin has a low heat distortion point, indicating a low degree of cross-linkage. ….”

I routinely adhered (since starting in 1981 and prior to that during my studies at the University) up to date with the so called “classical polymerization schedule” as well as mixing proportions of LUFT (using the classical SHELL-Monsanto EPON 812 regularly up to 1985, then changing to Glycidether 100 from SERVA as the substitute for the then unavailable EPON 812: 35-37°C at least over night, 45°C at least 12 h, 65°C at least for 12 h adding 1.75% DMP-30 to the resin mixture; but also using the so called “rapid embedding schedule” [= dehydration for some reasons after 70% EtOH into 2,2,-DMP acidified, at least 5x for 5 min each, 2,2-DMP acidified : complete resin mixture= 1:1 at least for 2 h on rotator, the resin mixture of which consists of the original LUFT ratio Epon 812/Glycidether100 : DDSA : MNA/NMA BUT + 2% DMP-30, starting polymerization with: 35°C for at least 3-4 hrs [and re-/orienting), 45°C for at least 2 hrs [and re-/orienting at the right time), 65°C for at least 2 hrs [resin has polymerized at that temperature though], and a final 1 h at 80°-85°C without no problems in cutting and/or staining semithin sections or ultrathin sections ).

Don’t know if you wanted information about low(er = below 35°C) polymerization temperatures for epoxy resins initially but must admit that I personally never tried (e.g.) ”PLT” with EPON or any other “old” Epoxide (EPON 812 substitute) resin (because of the boiling point of PO -at- ca.35°C).

*) John H. LUFT: IMPROVEMENTS IN EPOXY RESIN EMBEDDING METHODS J Biophys Biochem Cytol 9, -1961, pp.409-414.

NB: by separate e-mail to you I can provide a pdf “EPOXY RESINS & polymerizatn(Overview)by BHATNAGAR MS,1996(13-07-09pdf).pdf” which I haven’t evaluated crucially for regarding our quest but hope that you might find therein some valuable information on polymerization mechanisms.

Hope to have added anything new (or old news) to this your interesting request, which I would know more about if you get personal RE’s via the MSA Listserver….

best wishes and regards

Wolfgang

Wolfgang MUSS
SALZBURG
AUSTRIA
[to retire by 1st of Dec. 2015]

———

I use Buehler epothin or Stuers Epofix that both cure at room temp overnight. I have cured epothin in the refrigerator in the past. I have only used these to embed things for sections or SEM, they sure fast enough that there is little infiltration, except of larger voids. Both can be used with vacuum. -David
David A. Waugh, Ph.D.
Research Assistant
Department of Anatomy and Neurobiology
NEOMED
4209 State Route 44
Rootstown, OH 44272

———

Back in the early ‘70s we cured by first using a 35˚C oven overnight then
into 60˚ to finish off. If we left the blocks in the 35 too long they
never really got hard.

Next I had an oven that did not keep temperature very well. It fluctuated
between 50 and 60. I’d leave the real Epon 812 blocks in a full 48 hours
and that cut well.

Next came using original Epon, curing at 60˚ and another lab took blocks,
sectioned and immuno stained but I do not know the details. It worked!

I am interested to see what others say.

Pat Connelly

———

Yes, you can polymerize at a lower temp, just takes longer.
If you leave epoxy resin with the accelerator added at room temp it will polymerize in a few days.

Geoff (Mcauliff)

———

Yes it is possible to to polymerize epoxy resins below 60-70 C just by doubling the accelerator in the batch of resin used for embedding and polymerizing at 45 C for 48 hrs rather than the usual overnight. There are a number of labs that are polymerizing epoxy resins at 60C overnight and still doing colloidal gold immunolabel after embedding in epoxy resins. I have used epoxy resins based on Quetol 651 for the last 25 years and done immunolabel successfully. It is also possible to increase the anhydride to epoxide ratio (A:E) and get more cross linkage that way but I do not know of anyone who has tried that. It is something that most people are not knowledgable enough to do correctly. I submitted a paper on reviewing the use of Quetol 651 and formulations. I can send you a copy in the future after the paper is accepted.

There are a couple of things that can be done ia addition to lowering the temperature and doubling the accelerator. Brorrson recommended the use of para-phyleneaminediamine (PPD) to the dehydration alcohols which works quite nicely with epoxy or acrylic resins. The epoxies are easier to section and probably not as expensive as Lowicryls.

I am attaching a protocol on the use of PPD and a short paper that I published a couple of years ago in Microscopy Today (only in original off list message— Jan)

I know peole who swear that you can only use acrylic resins and must keep the temperature below 60 C; however the experience for some of us is just the opposite. In my lab we have done colloidal gold localization of GFP in a Quetol based epoxy resin.

Hope all this helps you go in the right direction.

E. Ann Ellis Ms, CEMT, FRMS, FMSA
Consultant in Biological Electron Microscopy
eann.ellisem-at-gmail.com

———




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From: nmz787-at-gmail.com
Date: Mon, 10 Aug 2015 21:29:33 -0500
Subject: [Microscopy] I'm taking a CRYO-EM class on Coursera!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I got an electron microscope a few months ago and just found this
course that I'm going to start going through:
https://www.coursera.org/learn/cryo-em/outline

Anyone else interested to work along with me?

My goal is to be able to repair my SEM and add in some custom
instrumentation or mechanical stuff (sensors, gantry/stage type
stuff). These goals are outside the scope of this course, but I expect
the course will only aide my general comfort with the subject area.

My background is in Biotechnology and Computer Science, with
electronics as a longtime hobby.

This might be pretty basic stuff for most of the folks on this list...
but I figured I'd pass it along!


--
-Nathan


--
-Nathan

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9, 26 -- To: Microscopy-at-microscopy.com
9, 26 -- Content-Type: text/plain; charset=UTF-8
==============================End of - Headers==============================




From: nmz787-at-gmail.com
Date: Mon, 10 Aug 2015 23:18:52 -0500
Subject: [Microscopy] Re: I'm taking a CRYO-EM class on Coursera!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Warren,
I've got a JEOL JSM-T200, and a bunch of schematics and all the
manuals as far as I can tell. I was told it works mostly, but that the
image seemed like a beam-deflection problem was occurring. I haven't
taken to looking into the problem much yet since I haven't really had
the time lately, but I do have a nice hefty textbook and now found
this course which I've been watching for an hour or so now. So far
it's pretty good!

Hopefully I can get it working again without too much effort, but I'm
up for trying to build a new beam deflection controller and deflection
amplifiers! I've seen at least the controllers for sale for
after-market patterning system upgrades. I've just got to get up to
speed on power supplies and amplifiers for high-voltage before I can
really make much progress on that. If I can trace a bad series of
components with my multimeter and/or oscilloscope, all the better to
get it up and running again sooner. But I'd LOVE to do patterning! I
don't really want to think about much more than beam deflection and
digital image acquisition for now though. At least someone else online
has done digital acquisition with an oscilloscope and some matlab-type
scripts (Ben Krasnow) with this same model... and I've been told by a
guy who was previously a maintenance tech that these scopes were great
to work on. He did say to watch out for some plastic supports that are
prone to breaking in the lens coils, he said they can crack when (if)
you need to remove to coils to remove hydrocarbon buildup.

Anyway, I didn't sink much into getting it, and it makes me giddy to
be able to say I own one. It will be fun no matter what the outcome,
which will at least be a mean set of pictures for takeitapart.com
(which I am a co-creator of).

Thanks!

On Mon, Aug 10, 2015 at 7:35 PM, Straszheim, Warren E [BIOTC]
{wesaia-at-iastate.edu} wrote:
} It might help to know about which SEM you have and what condition it is in.
}
} I think SEMs are a blast. I've been working with them for almost 40 years.
}
} However, they can also be rather challenging to repair. I have debugged ours often but usually left the service to the factory engineers. Depending on what you are faced with, it could be a daunting task.
}
} Best of luck,
} Warren
}
} -----Original Message-----
} From: nmz787-at-gmail.com [mailto:nmz787-at-gmail.com]
} Sent: Monday, August 10, 2015 9:31 PM
} To: Straszheim, Warren E [BIOTC]
} Subject: [Microscopy] I'm taking a CRYO-EM class on Coursera!
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} I got an electron microscope a few months ago and just found this course that I'm going to start going through:
} https://www.coursera.org/learn/cryo-em/outline
}
} Anyone else interested to work along with me?
}
} My goal is to be able to repair my SEM and add in some custom instrumentation or mechanical stuff (sensors, gantry/stage type stuff). These goals are outside the scope of this course, but I expect the course will only aide my general comfort with the subject area.
}
} My background is in Biotechnology and Computer Science, with electronics as a longtime hobby.
}
} This might be pretty basic stuff for most of the folks on this list...
} but I figured I'd pass it along!
}
}
} --
} -Nathan
}
}
} --
} -Nathan
}
} ==============================Original Headers==============================
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} 9, 26 -- To: Microscopy-at-microscopy.com
} 9, 26 -- Content-Type: text/plain; charset=UTF-8 ==============================End of - Headers==============================



--
-Nathan


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From: frank_karl-at-ardl.com
Date: Tue, 11 Aug 2015 13:48:39 -0500
Subject: [Microscopy] SEM and mahnetic particles

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I'm being asked to run a rubber tank wall that may have small particles of a magnetic ore stuck to it's surface (monazite, I believe) in our SEM.

Some question has been raised that the magnetic particles could be pulled off the sticky rubber surface and end up in out column.

Has anyone any experience with this material and will it create a problem for us?

Thanks.......
Frank Karl

This email and any of its attachments may contain confidential information intended only for the use of the addressee(s). If the reader of this email is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination or copying of this email is strictly prohibited. If you have received this email in error, please notify us by return email at info-at-ardl.com, permanently delete the email, and destroy any printouts. If this email contains test data and/or draft reports, you are hereby notified that only a signed original test report will contain official results, a copy of which resides in the project folder located at ARDL, Inc. Thank you. Akron Rubber Development Laboratory, Inc.



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From: Rosemary.White-at-csiro.au
Date: Wed, 12 Aug 2015 00:12:14 -0500
Subject: [Microscopy] measuring wall thickness

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Apologies for cross-posting from confocal list.

Has anyone written a plugin for ImageJ/Fiji that will calculate the
perpendicular distance between an inner and outer line at various
positions?

We need to measure the wall thickness on isolated plant cells which, some
of which look like cross-sections of a cylinder. Now, if they were all
nearly circular cylinders with even wall thickness, that'd be easy. But
these cells are far from perfectly cylindrical in shape and the wall
thickness is uneven.

In the past, we just made 4 measurements of the wall at fixed N-S-E-W
positions and calculated the average thickness. But with the imaging tools
available today, it should be possible to write a plugin that will do
something like this - run a ball along the wall which shrinks and swells
according to the wall thickness and record the ball diameter at every
position, for example. That would not only give us the average thickness
but some useful stats about variability (per cell and per sample) as well.

If anyone knows of something that will do this, you will have our eternal
gratitude!

thanks,
Rosemary

Dr Rosemary White
CSIRO Black Mountain
GPO Box 1600
Canberra, ACT 2601
Australia

T 61 2 6246 5475
E rosemary.white-at-csiro.au



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From: smithj-at-winthrop.edu
Date: Thu, 13 Aug 2015 08:55:40 -0500
Subject: [Microscopy] Stolen Wild M5-- South Carolina, USA

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


} On Aug 11, 2015, at 10:27 PM, Rosemary.White-at-csiro.au wrote:
}
} Apologies for cross-posting from confocal list.
}
} Has anyone written a plugin for ImageJ/Fiji that will calculate the
} perpendicular distance between an inner and outer line at various
} positions?
}
} We need to measure the wall thickness on isolated plant cells which, some
} of which look like cross-sections of a cylinder. Now, if they were all
} nearly circular cylinders with even wall thickness, that'd be easy. But
} these cells are far from perfectly cylindrical in shape and the wall
} thickness is uneven.
}
} In the past, we just made 4 measurements of the wall at fixed N-S-E-W
} positions and calculated the average thickness. But with the imaging tools
} available today, it should be possible to write a plugin that will do
} something like this - run a ball along the wall which shrinks and swells
} according to the wall thickness and record the ball diameter at every
} position, for example. That would not only give us the average thickness
} but some useful stats about variability (per cell and per sample) as well.
}
} If anyone knows of something that will do this, you will have our eternal
} gratitude!
}
} thanks,
} Rosemary
}
} Dr Rosemary White
} CSIRO Black Mountain
} GPO Box 1600
} Canberra, ACT 2601
} Australia

Dear Rosemary,
The 2D filament plug-in might do the job, although more will have to be added. With this plug-in, you can make “snakes” that follow edges, so you could find the inside and outside edges of cross-sections of the cells. Higher contrast works better, so using this with cryo data can be problematical. After you have traced the edges, you are still left with the task of determining the distance between them, but maybe someone else on either list can help.
Yours,
Bill





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From advertise.bz222zyjle-at-gmail.com Thu Aug 13 05:15:23 2015
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One of our Wild M5 stereomicroscopes, serial number 32035, with
transmitted light base and transport hood, has been stolen from the
Biology Building. This is the old beige model with the large knobs.
Reward of $100 for information leading to its return.
Thanks for any leads, and apologies for clogging the inboxes of those
of you outside of the U.S.
Julian

--
Julian P.S. Smith III
Director, Winthrop Microscopy Facility
Dept. of Biology
Winthrop University
349 Columbia Ave
Rock Hill, SC 29733

803-323-2111 x6427 (vox)
803-323-3448 (fax)
803-524-2347 (cell)
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From: Sharon.Matthews-at-medicine.ufl.edu
Date: Thu, 13 Aug 2015 16:16:19 -0500
Subject: [Microscopy] Uneven staining of epoxy semi-thin sections

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I have several spinal root fibers from rats that were fixed in 4% paraformaldehyde and 1% glutaraldehyde in phosphate buffer, followed by 1% osmium in NaCacodylate, then dehydrated and embedded in an Epon-812 replacement epoxy. After cutting semi-thins (400 nm), the sections were stained on a hot plate with 1% Toluidine Blue O in 1% Na Borate. This usually results in uniform staining of the root fibers, but this particular batch of fibers stained unevenly. The uneven pattern is usually a gradient with the outer edge stained light blue, and the inner portion stained dark blue. Sometimes the center fades back to light blue. The axons look good throughout and are not disrupted (at least, not at the light microscope level). Can anyone tell me why I am getting this pattern, and is there anything I can do to get uniform staining on these samples?

Thank you,

Sharon W. Matthews, Ph.D.
Senior Electron Microscopist
COM Electron Microscopy Core
University of Florida
Room RB-167, 1600 SW Archer Road
PO Box 100224 HSC
Gainesville, FL 32610
Telephone: (352) 846-0821
Fax:  (352) 392-8996
Email: emcore-at-medicine.ufl.edu




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From: vsoares-at-inesc-mn.pt
Date: Fri, 14 Aug 2015 06:04:35 -0500
Subject: [Microscopy] RE: I'm taking a CRYO-EM class on Coursera!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Nathan,

I also registerd for this course, even if I doubt I can do cryo-EM with the old tungsten filament electron microscope I have, but I hope to be albe to apply some of the things I will learn in this course. I use the SEM in my lab but was never formally trained, so nothing is too basic for me.

Virginia Soares
INESC-MN (Microsystems and Nanotechnologies)
R. Alves Redol, 9
1000-029 LISBON
Tel: +351213100300
Fax: +351213145843
www.inesc-mn.pt
www.in-nano.net
________________________________________
De: nmz787-at-gmail.com [nmz787-at-gmail.com]
Enviado: terça-feira, 11 de Agosto de 2015 3:50
Para: Virginia Abranches de Sousa R. Soares
Assunto: [Microscopy] I'm taking a CRYO-EM class on Coursera!

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I got an electron microscope a few months ago and just found this
course that I'm going to start going through:
https://www.coursera.org/learn/cryo-em/outline

Anyone else interested to work along with me?

My goal is to be able to repair my SEM and add in some custom
instrumentation or mechanical stuff (sensors, gantry/stage type
stuff). These goals are outside the scope of this course, but I expect
the course will only aide my general comfort with the subject area.

My background is in Biotechnology and Computer Science, with
electronics as a longtime hobby.

This might be pretty basic stuff for most of the folks on this list...
but I figured I'd pass it along!


--
-Nathan


--
-Nathan

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From: rbeavers-at-mail.smu.edu
Date: Fri, 14 Aug 2015 16:45:42 -0500
Subject: [Microscopy] Labs in the Dallas Tx area for these analysis techniques

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Email: kathryn.burke-at-nih.gov
Name: Kathryn Burke

Organization: Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.

Title-Subject: [Filtered] Excellent Opportunity - Position Open - Scientist I, Electron Microscopy,
618013

Message: Scientist I, 618013 (NCI)
FREDERICK, MD US

Apply on-line: http://jobs.leidos.com/ShowJob/Id/529588/Scientist-I-618013-(NCI)/

The Cancer Research Technology Program (CRTP) develops and implements emerging technology, cancer
biology expertise and research capabilities to accomplish NCI research objectives. The CRTP is an
outward-facing, multi-disciplinary hub purposed to enable the external cancer research community. A
major focus of the CRTP is the NCI RAS Initiative with the goal to discover new therapeutic
interventions against RAS-driven cancers. In addition, the CRTP hosts the Nanotechnology
Characterization Laboratory (NCL) which performs and standardizes preclinical efficacy and toxicity
testing of nanoparticles intended for cancer therapeutics and diagnostics, and the Antibody
Characterization Lab (ACL) which characterizes monoclonal antibodies or other renewable affinity
binding reagents for use in cancer related research. CRTP scientists also work collaboratively with
intramural NCI investigators to provide research technologies and expertise.

JOB DESCRIPTION

The CCR Electron Microscopy Core has access to four transmission electron microscopes (Hitachi
H-7600, Hitachi H-7650, FEI T-12 BioTwin, and FEI T-20) and two scanning electron microscopes
(Hitachi S-3000N and S-4500). The Scientist I will: 1) maintain the FEI T-12 and keep it at optimal
performance, 2) perform sample preparation for imaging of tissue, cells, organelles, viruses and
molecules with a variety of techniques including plastic embedding and sectioning, high-pressure
freezing, negative stain, and electron tomography, and 3) help core users with their microscopy
projects and perform training of new microscope users.

BASIC QUALIFICATIONS
PhD in biochemistry, structural biology, protein biochemistry, crystallography, or in a related
discipline from an accredited college or university appropriate to biomedical research, or eight
(8) years’ experience in lieu of degree
Foreign degrees must be evaluated for U.S. Equivalency
No experience required beyond degree
Proficiency in biological and/or material sample preparation for electron microscopy
Proficiency in the use and maintenance of transmission electron microscopes
Strong research background and publication record
Must be able to communicate well with service engineers for equipment on service contracts


PREFERRED QUALIFICATIONS
Experience in correlative light/electron microscopy
Experience in immuno-electron microscopy
Knowledge of tomography and related image processing
Experience with cryo EM applications, in particular high pressure freezing, freeze substitution, and
cryo-sectioning
Knowledge of digital image processing and analysis

Apply on-line: http://jobs.leidos.com/ShowJob/Id/529588/Scientist-I-618013-(NCI)/

Leidos Overview:
Leidos is an applied solutions company focused on markets that are seeing converging business and
technological trends, and address basic, enduring human needs: defense and national security, health
and life sciences, and energy, engineering and infrastructure. The Company's approximately 20,000
employees serve customers in the U.S. Department of Defense, the intelligence community, the U.S.
Department of Homeland Security, other U.S. Government civil agencies and commercial health and
engineering markets. Leidos is an Equal Opportunity Employer.

Apply on-line: http://jobs.leidos.com/ShowJob/Id/529588/Scientist-I-618013-(NCI)/

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From advertise.bz222yg-at-gmail.com Fri Aug 14 12:26:31 2015
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Message-ID: {1D12CACC.E39D21E8-at-gmail.com}

Trying to locate a local lab with these analytical techniques.
 
BET (Brunauer-Emmett-Teller) provides precise specific surface area in m2/g and pore area evaluation of materials by nitrogen multilayer adsorption. It is a very commonly used equipment in many labs.
 
DLS (Dynamic Light Scattering) measures particle sizes. We have been trying to understand the particle size of nano sized colloids in solution. The SEM images show that the particles get swelled and/or clustered when we place them in water, and so it became very difficult to understand the exact size when we have them in solution. So DLS will be extremely helpful for us to understand the size of particle aggregates.

Contact me directly if you can help.

Thanks 

Roy Beavers
Southern Methodist University
rbeavers-at-smu.edu


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From: microscopy.listserver-at-gmail.com
Date: Sat, 15 Aug 2015 08:30:42 -0500
Subject: [Microscopy] viaWWW:New Postion Open: Helium Ion Microscopist

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Organization: Simon Fraser University

Title-Subject: [Filtered] New Postion Open: Helium Ion Microscopist

Message: Burnaby BC, Canada
4DLabs Facility: www.4dlabs.ca/about/job-postings

JOB DESCRIPTION:

Establish a new Heilum Ion Microscopy facility within a larger microscopy user facility. Establish
research and development programs using the instrument. Facilitate access by other researchers.

PREFERRED QUALIFICATIONS:

PhD in one of (MSE, Physics, Appl. Physics, Chemistry, Biology, etc.)
Minimum of 4 years’ experience using a HIM.
Proficiency with other types of microscopy including SEM, Ne or Ga FIB, and or STEM, an asset.
Record of publications with portfolio of examples of microscopy skills that include HIM.

See further details at: www.4dlabs.ca/about/job-postings

Send your CV to info-at-4dlabs.ca
Questions please ask Karen Kavanagh: kavanagh-at-sfu.ca

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From: zaluzec.microscopy.com-at-gmail.com
Date: Sat, 15 Aug 2015 08:33:35 -0500
Subject: [Microscopy] viaWWW:SEM imaging of starch grains

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Email: tomw-at-uidaho.edu
Name: Tom Williams

Organization: Univ of Idaho

Title-Subject: [Filtered] SEM imaging of starch grains

Message: Greetings,

I have a user from our Food Sciences Dept with various starch specimens in need of SEM imaging.
Initial attempts were made with no specific prep other than carbon coating [using an evaporative rod
coater]. Results were okay but not great. Grains were often fractured and would rupture under the
beam after approx 30 seconds of exposure [used a 5 kV AV under normal High Vac conditions].

This geologist humbly requests input or suggested sample prep procedures for starch [such as metal
sputter coating vs carbon coating, or drying/dessication??].

My experience with starch is eating a donut.....

Any assistance would be greatly appreciated!

Cheers,
Tom Williams


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From: mail :      mail-at-ns.microscopy.com
Date: Sat, 15 Aug 2015 08:38:25 -0500
Subject: viaWWW:SF6 gas in TEM rooms

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Name: Ellen Lavoie

Organization: Univ Washington

Title-Subject: [Filtered] SF6 gas in TEM rooms

Message: Curious to know how others are handling SF6 gas detection in their TEM labs right now.

Is your room sealed well from draft and/or air flow? If so (or even if not) do you have an SF6
and/or O2 monitor in the room?

Happy to have either public or private replies.

Cheers,
Ellen Lavoie
UW - Material Analysis Facility
Seattle, WA, USA

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From: mail :      mail-at-ns.microscopy.com
Date: Sat, 15 Aug 2015 08:40:06 -0500
Subject: viaWWW: SF6 gas in TEM rooms

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Email: lavoie-at-uw.edu
Name: Ellen Lavoie

Organization: Univ Washington

Title-Subject: [Filtered] SF6 gas in TEM rooms

Message: Curious to know how others are handling SF6 gas detection in their TEM labs right now.

Is your room sealed well from draft and/or air flow? If so (or even if not) do you have an SF6
and/or O2 monitor in the room?

Happy to have either public or private replies.

Cheers,
Ellen Lavoie
UW - Material Analysis Facility
Seattle, WA, USA

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From: microscopy.listserver-at-gmail.com
Date: Sat, 15 Aug 2015 08:42:04 -0500
Subject: [Microscopy] viaWWW:ISI-SR50 available

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Email: kpseverin-at-alaska.edu
Name: Ken Severin

Organization: University of Alaska Fairbanks

Title-Subject: [Filtered] ISI-SR50 available

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From: microscopy.listserver-at-gmail.com
Date: Sat, 15 Aug 2015 08:46:14 -0500
Subject: [Microscopy] viaWWW:ISI-SR50 available

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All

Sorry, I used the incorrect forwarding server on the SF6 Message
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Email: kpseverin-at-alaska.edu
Name: Ken Severin

Organization: University of Alaska Fairbanks

Title-Subject: [Filtered] ISI-SR50 available

Message: We are (finally) taking our ISI-SR50 (tungsten) out of service. If someone in interested
it it (or parts of it) please contact me. Shipping from Alaska could prove problematic, or at least
expensive. The instrument was running until I pulled the plug.

Ken Severin
kpseverin-at-alaska.edu
University of Alaska Fairbanks

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From: tina-at-pbrc.hawaii.edu
Date: Sat, 15 Aug 2015 14:02:58 -0500
Subject: [Microscopy] Re: SEM imaging of starch grains

Contents Retrieved from Microscopy Listserver Archives
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Hi, Tom-

A food scientist here is looking at gluten and gluten-free baked goods and
dough, and is looking at starch grains from things like breadfruit flour.
These are all "gushy" preps. What we've been doing is freezing pieces in
liquid nitrogen (decided it wasn't worth trying to use a better cryogen
for this), then throwing them down on the benchtop to "cryofracture" them,
then freeze-drying them, since food scientists tend to have good
freeze-dryers. Then mount on stubs, coat, and they've been pretty good. Of
course, in this case, trying to decide what's a starch granule vs a fat
glob has been fun, but these guys think they know. (I reserve jusdement.)
If the material would not fracture by dropping it on the bench, we used
the razor-bade-hammer-popitopen technique.

Aloha,
Tina

} Message: Greetings,
}
} I have a user from our Food Sciences Dept with various starch specimens in need of SEM imaging.
} Initial attempts were made with no specific prep other than carbon coating [using an evaporative rod
} coater]. Results were okay but not great. Grains were often fractured and would rupture under the
} beam after approx 30 seconds of exposure [used a 5 kV AV under normal High Vac conditions].
}
} This geologist humbly requests input or suggested sample prep procedures for starch [such as metal
} sputter coating vs carbon coating, or drying/dessication??].
}
} My experience with starch is eating a donut.....
}
} Any assistance would be greatly appreciated!
}
} Cheers,
} Tom Williams
}
}
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****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: oshel1pe-at-cmich.edu
Date: Sat, 15 Aug 2015 19:16:57 -0500
Subject: [Microscopy] viaWWW:SEM imaging of starch grains

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Tom,

Starch grains are fun. They can be tough little buggers. I did some from barley in the past - the USDA people in the barley lab (because of the brewing industry in Wisconsin).
What are you trying to image?
Specimen prep:
If dry, like corn kernels, just break open the kernel. Cryofracture is fun, but not needed. Poke out the starchy endosperm and spread it on the stub. Sputter coat with Au/Pd as per usual.

If wet - dissected from fresh, moist grains, then:
Either dissect and allow to air dry - you won't affect the structure of the starch grains themselves and treat as above or fix with a normal formaldedhyde/glut fix, use an extended - like an hour or more - dehydration series and critical point dry.
Dissect some more and spread on a stub.

If they're looking at how the grain is digested once the seed germinates - as the barley people were, then you must fix and dehydrate. But! It's also worth going the simple "do as little as possible" route.
Starch grains are very tough and are very hard to break open - hitting with a hammer just produces individual grains. I've even tried cryofracture and not broken open a grain.
But, the seeds do use enzymes and "open" the starch grains, producing pits. The walls of the pits have really neat light-dark layering.

Starch grains left behind by baking, I don't know. I've looked at bread dough and not seen starch grains, nor did I see any in the (fully baked) pretzels I did.
Donuts, though ... there's a hole in my studies, there.

Phil

Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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Email: tomw-at-uidaho.edu
Name: Tom Williams

Organization: Univ of Idaho

Title-Subject: [Filtered] SEM imaging of starch grains

Message: Greetings,

I have a user from our Food Sciences Dept with various starch specimens in need of SEM imaging.
Initial attempts were made with no specific prep other than carbon coating [using an evaporative rod
coater]. Results were okay but not great. Grains were often fractured and would rupture under the
beam after approx 30 seconds of exposure [used a 5 kV AV under normal High Vac conditions].

This geologist humbly requests input or suggested sample prep procedures for starch [such as metal
sputter coating vs carbon coating, or drying/dessication??].

My experience with starch is eating a donut.....

Any assistance would be greatly appreciated!

Cheers,
Tom Williams


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From: bfoster-at-the-mip.com
Date: Sat, 15 Aug 2015 20:08:49 -0500
Subject: [Microscopy] SEM imaging of starch grains

Contents Retrieved from Microscopy Listserver Archives
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Hi, Tina

Is there a reason they haven't tried the old fashioned way and looked at these samples with crossed polars in a light microscope? Starch grains give a distinctive maltese cross.

Good hunting,
Barbara Foster, President & Chief Consultant
Microscopy/Microscopy Education ... "Education, not Training"
7101 Royal Glen Trail, Suite A - McKinney, TX 75070 - P: 972-924-5310
www.MicroscopyEducation.com


NEW! Getting involved in Raman or FTIR?
MME is now offering courses in these areas specifically for microscopists!
Now scheduling courses through the end of 2015. We can customize a course on nearly any topic, from fluorescence to confocal to image analysis to SEM/TEM.
Call today for a free training evaluation.



At 02:26 PM 8/15/2015, you wrote:



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From: Rosemary.White-at-csiro.au
Date: Sat, 15 Aug 2015 20:29:23 -0500
Subject: [Microscopy] Re: SEM imaging of starch grains

Contents Retrieved from Microscopy Listserver Archives
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I wondered this myself!

But for imaging starch breakdown - seeing the holes develop, and also for
getting a quicker idea of the relative size, shape and abundance of small
and large granules, SEM is quick, and you can keep the samples and look at
them again if necessary.

Here, people from the starch lab extract the starch, wash to remove
protein and other contaminants, dry it, spread on a sticky carbon tab on a
stub, image with BSE at 10 Pa (no coating necessary). For higher
magnification or resolution, gold-coat then image at 20 kV under HV.

Generally no fixation or other processing because in the various rinse
steps you tend to lose the smaller B-granules which people here are very
interested in. It's also easy to do and this way once trained, the starch
folk can do this without needing my input.

Just have to make sure not to dwell on the grains too much when focussing
or they tend to crack, especially if uncoated.

cheers,
Rosemary

On 16/08/15 11:15 AM, "bfoster-at-the-mip.com" {bfoster-at-the-mip.com} wrote:

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From: Duane.Harland-at-agresearch.co.nz
Date: Mon, 17 Aug 2015 15:55:55 -0500
Subject: [Microscopy] Morgagni + MegaVIII + Tengra, possible?

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Email: gary-at-gaugler.com
Name: Dr Gary Gaugler

Title-Subject: [Filtered] LEO/Zeiss SmartSEM macros

Message: Message: Hello Listers:

Now that all are perhaps back from M&M, I'm posting this
message again in hopes of some responses.

I'd really like to find some LEO/Zeiss users who are way more versed in SmartSEM macros than myself.
I'm trying to edit a macro to take scans with scan speed and line integration values according to
specific store resolutions. This seemed pretty straightforward but it got really problematic very
quickly.

The image storing I'm using is line integration for noise reduction, and depending on the store
resolution, the scan speed and line integration N are changed to result in about a one minute total
scan time for each store resolution. The macro I have thus far is:

Macro Name : photo2
Version 1.0
/* GDG July 2015 */
Unfreeze All
Freeze on = End Frame
If : Store resolution = 3072 * 2304 Is True
Line Int.
N= 8
Scan Speed 5
EndIf Statement
If : Store resolution = 2048 * 1536 Is True
Line Int.
N= 6
Scan Speed 6
EndIf Statement
If : Store resolution = 1024 * 768 Is True
Line Int.
N= 7
Scan Speed 8
EndIf Statement
If : Store resolution = 512 * 384 Is True
Line Int.
N= 12
Scan Speed 9
EndIf Statement
End Macro PHOTO2


I have a drop down Menu for Store Resolution but I cannot figure out how to feed this into the macro
before the first If statement. I tried Else and other decision statements but this macro is close to
working but not working. If I set the Store Resolution in the Scanning tab and then just run the
macro, it works fine. But I'm looking for a way to specify the resolution at the beginning and have
that fed into the Photo2 macro.

Does anyone have any suggestions about how to accomplish this task?

All inputs are appreciated. TIA.


gary g.


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measurement techniques, theory and modeling of oxide heterostructures
and interfaces, experimental investigation and tuning of
interface-related properties in conducting, insulating and magnetic
oxides, chemical and electrochemical effects in manifestation of
physical functionalities, applications based on interface-related
phenomena in complex-oxide heterostructures, and new phenomena appearing
in complex oxides owing to heterostructuring.

*Instructions:*Suggestions for invited speakers should be submitted at
the APS nomination website,
{http://www.aps.org/units/dmp/meetings/invited.cfm} http://www.aps.org/units/dmp/meetings/invited.cfm. Please
select category,/13.1.4 Complex Oxide Interfaces and Heterostructures
(DMP),/and complete the nomination form in full.

Your nomination will go to the organizers of the Focus Topic for which
you have suggested a candidate and will aid the organizers in their
selection of invited speakers. In suggesting speakers, please keep in
mind that speakers who gave an invited talk at the previous March
Meeting are ineligible (2015 March Meeting invited speakers:
{http://meetings.aps.org/Meeting/MAR15/APS_Invited} http://meetings.aps.org/Meeting/MAR15/APS_Invited).

On behalf of the symposium organizers,

James Rondinelli, Northwestern University
Sergei V. Kalinin, Oak Ridge National Laboratory

--
Sergei V. Kalinin

Director,
Institute for Functional Imaging of Materials

Theme Leader,
Center for Nanophase Materials Science

Oak Ridge National Laboratory

Phone: (865) 241-0236


==============================Original Headers==============================
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From ohn.bullocknewsbbug-at-gmail.com Mon Aug 17 13:47:11 2015
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Message-ID: {BD4338C2.65F6FBFE-at-gmail.com}

Greetings colleagues,

I am in a slightly frustrating situation. I have a FEI Morgagni 268D TEM 100kV. We are trying to get both Megaview III and Tengra cameras (both made by Emsis, formerly OIS, formerly SIS) to run with OIS iTEM, but it is proving very difficult.

Have you ever seen a Morgagni control PC running XP or Win7?
Anyone ever had experience getting these cameras to talk together on the same system?
I'd be delighted to hear from you either on forum or privately.

It is definitely a software issue as we can get both cameras working on a Win7 PC separately and even together they are both briefly recognised, but iTEM software becomes unusable as soon as one or the other is selected.

Current likely solution is to have 2 pcs running, one controlling TEM and Megaview III and the other just with the Tengra (we will have to manually input mag etc. when we shoot and do manual montaging).

Other details:
The control PC communicates via serial links to the microscope (via a DOS-like eprom pc).

The control PC runs Windows 2000 which, I am told by FEI, is the latest operating system that the control software should officially be run on.

Our MegaViewIII has had a firmware upgrade that will allow compatibility with later OSes, but not the hardware upgrade to G2 camera.

Hoping someone out there has been crazy enough to try this before?
Duane

AgResearch Limited | Lincoln Research Centre | New Zealand
Dr Duane P Harland, Senior Scientist
T +64 3 321 8710 E duane.harland-at-agresearch.co.nz
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From: bethrichardson-at-uga.edu
Date: Tue, 18 Aug 2015 10:23:10 -0500
Subject: [Microscopy] plunge freezing in Memphis?

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Hi all,
Does anyone in the Memphis, TN area do plunge freezing and freeze substitution? or high pressure freezing?
Any cryo at Graceland? ;-)
thank you, thank you very much,
Beth

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From: microscopy.listserver-at-gmail.com
Date: Wed, 19 Aug 2015 10:19:59 -0500
Subject: [Microscopy] viaWWW:Looking for used digital camera for JEOL 200CX

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Email: ngr-at-ufl.edu
Name: Nicholas Rudawski

Organization: University of Florida

Title-Subject: [Filtered] used digital camera for JEOL 200CX

Message: Hello everyone:

Does anyone happen to have a working TEM digital camera and is looking to sell it? We have a 16
year old Gatan MSC 794 mounted on a JEOL 200CX; the camera is starting to malfunction and Gatan
cannot guarantee it can be repaired since it is discontinued, so we are looking for a replacement.

Thanks,

Nick


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From: microscopy.listserver-at-gmail.com
Date: Wed, 19 Aug 2015 10:21:01 -0500
Subject: [Microscopy] viaWWW:Biophysical Society Cryo-EM Subgroup

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Email: egelman-at-virginia.edu
Name: Edward Egelman

Organization: University of Virginia

Title-Subject: [Filtered] Biophysical Society Cryo-EM Subgroup

Message: Dear Colleagues,
Now that the Cryo-EM Subgroup of the Biophysical Society is official, it is time to start
planning the first Symposium which we will hold in conjunction with the Annual Meeting in Los
Angeles (27 February to 2 March, 2016). Like all subgroups, the Cryo-EM Subgroup Symposium will be
held the day before the Annual Meeting: from 7:00 to 9:00 pm on Saturday, 27 February. We would like
to have six talks, each 20 minutes including 5 minutes for questions. Following the talks, we will
have a Business Meeting from 9:00 to 9:30 pm during which we will elect officers of the subgroup and
decide on the format for future meetings. We want to guarantee a diverse group of speakers that
includes students, postdocs and faculty. Due to the rapid pace of progress in cryo-EM these days, we
thought that rather than inviting specific individuals, we would solicit abstracts with a deadline
of 10 September. The site for abstract submission is:

https://www.surveymonkey.com/r/G5LLS3N

We will notify selected speakers by 16 September and they will be offered complimentary
registration for the full Annual Meeting. Those who were not selected will be able to submit the
same (or different) abstracts through the official Biophysical Society website, which has a 1
October deadline. We plan to also organize one or more Cryo-EM platform sessions during the Annual
Meeting, the number of which will simply depend upon the number of abstracts submitted for the 1
October deadline.

Regards,
The ad hoc committee for the Cryo-EM Subgroup
Bridget Carragher
Yifan Cheng
Edward Egelman
Irina Serysheva
David Stokes
Da-Neng Wang

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From: microscopy.listserver-at-gmail.com
Date: Wed, 19 Aug 2015 10:21:59 -0500
Subject: [Microscopy] viaWWW:Decommissioning Scopes

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Email: mandih-at-ixrfsystems.com
Name: Mandi Hellested

Organization: IXRF Systems

Title-Subject: [Filtered] Decommissioning Scopes

Message: We are decommissioning two research/demo tools;
Hitachi3000H and FEI/Philips XL30.
Willing to provide with or without new SDD EDS.

Please contact travisw-at-ixrfsystems.com if you are interested.



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From: microscopy.listserver-at-gmail.com
Date: Wed, 19 Aug 2015 10:22:45 -0500
Subject: [Microscopy] viaWWW:Biological TEM Workshop @University of Georgia

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Email: jpshield-at-uga.edu
Name: John Shields

Organization: University of Georgia

Title-Subject: [Filtered] Biological TEM Workshop

Message: The Georgia Electron Microscope center at the University of Georgia will be holding an
intensive, three day workshop on Biological Transmission Electron Microscopy. October 12-14, 2015.
Participation is limited to six people and the deadline is October 1.

Information on registration can be found at GEM.uga.edu and a flyer with more information, cost and
other details can be obtained from John Shields at jpshield-at-uga.edu


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From: microscopy.listserver-at-gmail.com
Date: Wed, 19 Aug 2015 18:30:24 -0500
Subject: [Microscopy] viaWWW:Biological sample preparation method for element analysis

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Email: tomw-at-uidaho.edu
Name: Tom Williams

Organization: Univ of Idaho

Title-Subject: [Filtered] Thanks for all the Starch help!

Message: Greetings,

The help and suggestions for starch imaging where incredibly useful and generous. Many sent along
detailed suggestions, steps, and helpful hints. After incorporating several of the tips I now have
much better [and improving] images. I and my faculty member are much happier :)) .

Thanks again to all those who helped.

Cheers,
Tom


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From advertise.bz222tnpv-at-gmail.com Wed Aug 19 12:48:32 2015
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Email: fengxia.liang-at-med.nyu.edu
Name: Alice Liang

Organization: NYULMC OCS Microscopy Core

Title-Subject: [Filtered] Biological sample preparation method for element analysis using EDX

Message: We have a project need to calculate calcium amount in the mitochondria of cultured cells.
We tried once with SEM/EDX using thin section of routine TEM protocol of GA/OsO4/Epon with HEPES
buffer, and result is not good. There are obvious some heavy mental contaminants, but we can't
detect Calcium. Any suggestion?

Thanks,
Alice
NYULMC OCS Microscopy Core

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From: microscopy.listserver-at-gmail.com
Date: Thu, 20 Aug 2015 18:29:40 -0500
Subject: [Microscopy] viaWWW:Looking for a CL detector for a Quanta 200

Contents Retrieved from Microscopy Listserver Archives
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Email: kpseverin-at-alaska.edu
Name: Ken Severin

Organization: University of Alaska Fairbanks

Title-Subject: [Filtered] Looking for a CL detector for a Quanta 200

Message: I'm in the process of putting together a Quanta 200 and would love to hang a CL detector
(any sort for now) on it. If someone has one they are looking to move, let me know and we'll see if
we can work something out. Thanks!

Ken Severin

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From: microscopy.listserver-at-gmail.com
Date: Thu, 20 Aug 2015 18:30:27 -0500
Subject: [Microscopy] =?UTF-8?Q?viaWWW:Position_Available_-_Research_Fellowship_=c2=96_Mo?=

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Email: joanne.etheridge-at-monash.edu
Name: Joanne Etheridge

Organization: Monash University

Title-Subject: [Filtered] Position Available - Research Fellowship – Monash University

Message: Monash University, in Melbourne, Australia, is seeking a research fellow to conduct
high-quality research in the development and application of methods to determine atomic structures
using CBED, STEM and related techniques.

Duration: 2 years with possible extension to 3.

Full position description and instructions on how to apply can be found at:

http://www.monash.edu.au/jobs/externaljobs.html Search for Job No. 537419

Enquiries to: Professor Joanne Etheridge
Tel.: +61 3 9905 1836
Email: joanne.etheridge-at-monash.edu

Closing Date: 8 September 2015

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From: microscopy.listserver-at-gmail.com
Date: Thu, 20 Aug 2015 18:31:16 -0500
Subject: [Microscopy] viaWWW:Frozen Insects for TEM

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Email: joseph.mowery-at-ars.usda.gov
Name: Joseph Mowery

Organization: USDA ARS SGIL ECMU

Title-Subject: [Filtered] Frozen Insects for TEM

Message: Greetings,

We're interested in processing moths for TEM, but the moths have been stored in a 0F (-18C) freezer
for a few weeks or months. Will it still be possible to immerses these moths in glutaraldehyde and
process them for conventional TEM? I understand the ultrastructure may not be optimal, but has
anyone had success processing frozen insects for TEM?

Thanks,
-Joe

Joe Mowery | Biologist
Electron and Confocal Microscopy Unit
USDA Agricultural Research Service
Lab 301-504-9027 | Mobile 817-821-8566
joseph.mowery-at-ars.usda.gov


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From: microscopy.listserver-at-gmail.com
Date: Thu, 20 Aug 2015 18:32:08 -0500
Subject: [Microscopy] viaWWW:Biological sample preparation method for element analysis

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Email: fengxia.liang-at-med.nyu.edu
Name: Alice Liang

Organization: NYULMC OCS Microscopy Core

Title-Subject: [Filtered] Biological sample preparation method for element analysis using EDX

Message: Thank you everyone for the quick responses. I learned that the calcium level is important
since EDX can only detect high level of the element; EELS might be better for light element
analysis. Also it is better to use cryosection since conventional room temperature method might wash
out the calcium.

Thanks again,
Alice

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From: microscopy.listserver-at-gmail.com
Date: Fri, 21 Aug 2015 08:04:07 -0500
Subject: [Microscopy] viaWWW:radon 222 and 220 in uhv system

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Email: oddioeng-at-aol.com
Name: j. allen williams, jr

Title-Subject: [Filtered] radon 222 and 220 in uhv system

Message: Greetings,

I am curious to know if anyone has encountered Radon 222 and RDon 220 in your ultra high vacuum
systems. All of my valves are metal bellows, vcr fitings with Ni gaskets, large flanges are conflat
with copper gaskets.from the fore output of the turbo, to the inlet of the mechanical pump there are
qf flanges with viton gaskets. Approximate size of manifold is ~15 ltr. At 60 C, my ion pressure is
~1.4 x 10-8 torr.

With the RGA my Rn 222 peak averages between 3.4 x 10-13 down to about 6.2 x 10-14 in ion current.
The 220 peak closely follows. The water vapor peak averages about 5.3 x 10-13 ion current.

Helium 4 leak testing reveals no leaks at ~1.0 x 10-9 sccm-atm.
Where is the radon coming from?

Thank you for your time,

J. Allen Williams, Jr

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From: wtivol-at-sbcglobal.net
Date: Fri, 21 Aug 2015 19:46:14 -0500
Subject: [Microscopy] Re: viaWWW:radon 222 and 220 in uhv system

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} On Aug 21, 2015, at 6:25 AM, microscopy.listserver-at-gmail.com wrote:
}
} Email: oddioeng-at-aol.com
} Name: j. allen williams, jr
}
} Title-Subject: [Filtered] radon 222 and 220 in uhv system
}
} Message: Greetings,
}
} I am curious to know if anyone has encountered Radon 222 and RDon 220 in your ultra high vacuum
} systems. All of my valves are metal bellows, vcr fitings with Ni gaskets, large flanges are conflat
} with copper gaskets.from the fore output of the turbo, to the inlet of the mechanical pump there are
} qf flanges with viton gaskets. Approximate size of manifold is ~15 ltr. At 60 C, my ion pressure is
} ~1.4 x 10-8 torr.
}
} With the RGA my Rn 222 peak averages between 3.4 x 10-13 down to about 6.2 x 10-14 in ion current.
} The 220 peak closely follows. The water vapor peak averages about 5.3 x 10-13 ion current.
}
} Helium 4 leak testing reveals no leaks at ~1.0 x 10-9 sccm-atm.
} Where is the radon coming from?
}
} Thank you for your time,
}
} J. Allen Williams, Jr
}
Dear Allen,
The source of the radon could be the soil, depending where you are. For example, there is a formation called the Reading Prong in PA and NY that is very high in Rn, so much so that installing a heat pump system, which requires that the building is well sealed, leads to dangerous levels. Since Ems are typically in sub-basements, one would expect the highest Rn concentrations there. In fact, unless you have a few grams of radium lying around, the soil is certainly the source.
Yours,
Bill





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From: microscopy.listserver-at-gmail.com
Date: Mon, 24 Aug 2015 08:58:24 -0500
Subject: [Microscopy] viaWWW:Position Open:Research Development Officer Loughborough

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Email: s.s.doak-at-lboro.ac.uk
Name: Scott Doak

Organization: Materials Department, Loughborough University, UK

Title-Subject: [Filtered] Position Open:Research Development Officer

Message: Closing Date: 14 September 2015
The post is a full time, permanent role on grade 7 (Ł38,511 - Ł45,954).
Informal enquiries should be made to Scott Doak by email at: S.S.Doak-at-lboro.ac.uk or by telephone on
+44 (0)1509 223314.

A vacancy has arisen for a Research Development Officer in Loughborough Materials Characterisation
Centre (LMCC), in the Department of Materials at Loughborough University. This would suit an
Electron Microscopist with a background in Materials Science.
The LMCC provides a high quality materials characterisation facility (including electron and optical
microscopy, x-ray diffraction, thermal analysis and surface analysis) to support research within
Loughborough University, the wider academic community and for industrial clients.
This specialised role will play a vital part in representing the LMCC to external organisations,
delivering and managing existing projects and developing new projects from inception stage. The post
holder will be a technical specialist, with hands on experience of advanced microstructural
characterisation techniques, such as SEM, FIB, EDS, EBSD and TEM. The ideal applicant will also have
a track record of undertaking research involving relevant instrumentation and experience of writing
or contributing to successful research grant applications.

Full position description and instructions on how to apply can be found at:
https://vacancies.lboro.ac.uk/tlive_webrecruitment/wrd/run/ETREC107GF.open?VACANCY_ID%3d6376885YIl%1B&WVID=5913100PrZ&LANG=USA


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From: microscopy.listserver-at-gmail.com
Date: Mon, 24 Aug 2015 08:59:17 -0500
Subject: [Microscopy] viaWWW:Position open: Research Associate in Nuclear Graphite

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Email: H.Wu2-at-lboro.ac.uk
Name: Dr H Wu

Organization: Materials Department, Loughborough University, UK

Title-Subject: [Filtered] Position open: Research Associate in Nuclear Graphite

Message: Understanding and Improving Graphite for Advanced Nuclear Fission (UNIGRAF)

Fixed term for 36 months. Closing date: 8th September 2015
For full detail follow the link:
http://www.jobs.ac.uk/job/ALT703/research-associate-in-nuclear-graphite/


Required to undertake experimental research on structure from atomic- to micro-scale of iso-graphite
for advanced nuclear reactors. The project aims to improve the capability of nuclear graphite
through a better understanding of irradiation-induced changes in structure and their impact on
mechanical/physical behaviour. The post is part of an EPSRC funded project "UNIGRAF" in partnership
with Oxford and Bristol University, and multi supporters in USA, China and Germany.

Based at Loughborough the post holder will have strong collaborations with scientists/engineers from
all partners, and focus on structure characterisation before and after irradiation using HRTEM,
EELS, FIB and other techniques. You will have opportunity to access structural characterisation
facilities in Oak Ridge National Laboratory, Oxford, and EPSRC National Facility, and multi overseas
travel is expected. A good honours degree (2.1 minimum) and a PhD or equivalent in Materials
Science, Physics, or another relevant discipline and experience in materials structural
characterisation techniques is essential. Research in graphite/graphene materials and knowledge in
nuclear materials is desirable.

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From: tbargar-at-unmc.edu
Date: Wed, 26 Aug 2015 16:34:39 -0500
Subject: [Microscopy] Differential ultracentrifugation fractions, best buffer to use in

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Email: mlibbee-at-gmail.com
Name: Marissa

Organization: NCEM/MF

Title-Subject: [Filtered] cryo- transfer systems

Message: If anyone owns or has experience with the Quorum, Gatan or Leica cryo- transfer systems and
has a willingness to offer some advice and feedback, please contact me offline.

Thank you,

Marissa Libbee
510-495-2308
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Dear Listers,

A researcher here at UNMC is collecting mitochondria and synaptosome fractions via differential ultracentrifugation. They would like to know which buffer is best to use in the fixative,0.1M Sodium Cacodylate or 0.1M Sorensen's Phosphate Buffer. The aldehyde percentages are 2% glutaraldehyde and 2% paraformaldehyde. All advice is appreciated, thank you.

Tom Bargar
UNMC
Electron Microscopy Core Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu


The information in this e-mail may be privileged and confidential, intended only for the use of the addressee(s) above. Any unauthorized use or disclosure of this information is prohibited. If you have received this e-mail by mistake, please delete it and immediately contact the sender.



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From: tbargar-at-unmc.edu
Date: Wed, 26 Aug 2015 16:51:44 -0500
Subject: [Microscopy] Differential ultracentrifugation fractions, best buffer to use in

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listers,

A researcher here at UNMC is collecting mitochondria and synaptosome fractions via differential ultracentrifugation. They would like to know which buffer is best to use in the fixative,0.1M Sodium Cacodylate or 0.1M Sorensen's Phosphate Buffer. The aldehyde percentages are 2% glutaraldehyde and 2% paraformaldehyde. All advice is appreciated, thank you.

Tom Bargar
UNMC
Electron Microscopy Core Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu


The information in this e-mail may be privileged and confidential, intended only for the use of the addressee(s) above. Any unauthorized use or disclosure of this information is prohibited. If you have received this e-mail by mistake, please delete it and immediately contact the sender.



==============================Original Headers==============================
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From: PhillipsT-at-missouri.edu
Date: Wed, 26 Aug 2015 17:36:00 -0500
Subject: [Microscopy] Differential ultracentrifugation fractions, best buffer to use in

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Phosphate buffer will cause calcium to precipitate out and form noticeable dark spots in the TEM - especially in mitochondria. Cacodylate buffer will avoid that but so will one of the more modern generation buffers such as HEPES or PIPES. Why deal with the toxicity and increased environmental burden of using an arsenic-based buffer? I admit buffers can alter the preservation in subtle ways but a priori there is no reason to assume cacodylate is superior to HEPES or PIPES. I use HEPES at pH 7.4 for my fixations.



Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

-----Original Message-----
X-from: tbargar-at-unmc.edu [mailto:tbargar-at-unmc.edu]
Sent: Wednesday, August 26, 2015 4:52 PM
To: Phillips, Thomas E. {PhillipsT-at-missouri.edu}

Dear Listers,

A researcher here at UNMC is collecting mitochondria and synaptosome fractions via differential ultracentrifugation. They would like to know which buffer is best to use in the fixative,0.1M Sodium Cacodylate or 0.1M Sorensen's Phosphate Buffer. The aldehyde percentages are 2% glutaraldehyde and 2% paraformaldehyde. All advice is appreciated, thank you.

Tom Bargar
UNMC
Electron Microscopy Core Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu


The information in this e-mail may be privileged and confidential, intended only for the use of the addressee(s) above. Any unauthorized use or disclosure of this information is prohibited. If you have received this e-mail by mistake, please delete it and immediately contact the sender.



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18, 34 -- From PhillipsT-at-missouri.edu Wed Aug 26 17:35:59 2015
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From: nizets2-at-yahoo.com
Date: Thu, 27 Aug 2015 01:19:09 -0500
Subject: [Microscopy] Differential ultracentrifugation fractions, best

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I can only second that piece of phillipsian wisdom. :-)

Stephane

--------------------------------------------
On Thu, 8/27/15, PhillipsT-at-missouri.edu {PhillipsT-at-missouri.edu} wrote:

Subject: [Microscopy] RE: Differential ultracentrifugation fractions, best
To: nizets2-at-yahoo.com
Date: Thursday, August 27, 2015, 12:40 AM




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Phosphate buffer will cause calcium to precipitate out and
form noticeable dark spots in the TEM - especially in
mitochondria. Cacodylate buffer will avoid that but so will
one of the more modern generation buffers such as HEPES or
PIPES. Why deal with the toxicity and increased
environmental burden of using an arsenic-based buffer? I
admit buffers can alter the preservation in subtle ways but
a priori there is no reason to assume cacodylate is superior
to HEPES or PIPES. I use HEPES at pH 7.4 for my fixations.



Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

-----Original Message-----
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[mailto:tbargar-at-unmc.edu]
Sent: Wednesday, August 26, 2015 4:52 PM
To: Phillips, Thomas E. {PhillipsT-at-missouri.edu}
Subject: [Microscopy] Differential ultracentrifugation
fractions, best buffer to use in




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Dear Listers,

A researcher here at UNMC is collecting mitochondria and
synaptosome fractions via differential
ultracentrifugation.  They would like to know which
buffer is best to use in the fixative,0.1M  Sodium
Cacodylate or 0.1M Sorensen's Phosphate Buffer.  The
aldehyde percentages are 2% glutaraldehyde and 2%
paraformaldehyde.  All advice is appreciated, thank
you.

Tom Bargar
UNMC
Electron Microscopy Core Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu


The information in this e-mail may be privileged and
confidential, intended only for the use of the addressee(s)
above. Any unauthorized use or disclosure of this
information is prohibited. If you have received this e-mail
by mistake, please delete it and immediately contact the
sender.



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7, 39 -- Subject: Differential ultracentrifugation
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From: nizets2-at-yahoo.com
Date: Thu, 27 Aug 2015 01:41:52 -0500
Subject: [Microscopy] Re: viaWWW:Frozen Insects for TEM

Contents Retrieved from Microscopy Listserver Archives
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Hi Joseph!

Summary (you don't need the details to take a decision):
"not optimal" is mildly put.
Leaving biological material unfixed at -18°C (it is probably the worst method to preserver biological material) and expecting to see anything meaningful in TEM is not realistic.
If you want to use TEM, you are interested in fine morphology right? Well you won't get fine morphological information this way.

Details (if you want to know why):
1) Upon freezing and especially slowly freezing like it happens when you put a specimen at -18°C, the water in the tissue and cells crystallizes. Nice spiky crystals.
The crystals don't care about the biological structures (like membranes), they grow through them, perforating them.
Upon thawing, the membrane are literally cut in pieces, leaving you with a biological soup with very few original morphological properties.
2) The cellular enzymes have had plenty of time to do whatever job they have to do
3) Big osmotic issues. Slowly freezing produces extreme osmotic forces because while some water freezes the remaining water which is in liquid state sees its salt concentration dramatically increase

Hope you can convince your colleagues to invest time and money in something more useful (like reading a book about the usefulness of fixatives).

Stephane





--------------------------------------------
On Fri, 8/21/15, microscopy.listserver-at-gmail.com {microscopy.listserver-at-gmail.com} wrote:

Subject: [Microscopy] viaWWW:Frozen Insects for TEM
To: nizets2-at-yahoo.com
Date: Friday, August 21, 2015, 1:45 AM




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Email: joseph.mowery-at-ars.usda.gov
Name: Joseph Mowery

Organization: USDA ARS SGIL ECMU

Title-Subject: [Filtered] Frozen Insects for TEM

Message: Greetings,

We're interested in processing moths for TEM, but the moths
have been stored in a 0F (-18C) freezer
for a few weeks or months. Will it still be possible to
immerses these moths in glutaraldehyde and
process them for conventional TEM? I understand the
ultrastructure may not be optimal, but has
anyone had success processing frozen insects for TEM?

Thanks,
-Joe

Joe Mowery | Biologist
Electron and Confocal Microscopy Unit
USDA Agricultural Research Service
Lab 301-504-9027 | Mobile 817-821-8566
joseph.mowery-at-ars.usda.gov


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From: microscopy.listserver-at-gmail.com
Date: Thu, 27 Aug 2015 07:45:02 -0500
Subject: [Microscopy] viaWWW:Course annoucement: Basic-ultramicrotomy mini-course, October

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Email: rhsia-at-umaryland.edu
Name: Ru-ching Hsia

Organization: University of Maryland, Baltimore

Title-Subject: [Filtered] Course annoucement: Basic-ultramicrotomy mini-course, October 26th and
27th, 2015

Message: Dear Colleagues,

We are pleased to announce that the Electron Microscopy Core Imaging Facility (EMCIF) at the
University of Maryland Baltimore will be offering a two day basic-ultramicrotomy mini-course on
October 26th and 27th, 2015.
This course is for beginner or novice who wish to learn or sharpen their room temperature
ultramicrotomy techniques for sectioning resin embedded biological material. No prior experience is
required.
The course will include lectures, demonstrations and hands on practice.
Below are the topics that will be covered in the course
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From: microscopy.listserver-at-gmail.com
Date: Thu, 27 Aug 2015 17:33:52 -0500
Subject: [Microscopy] viaWWW:CM10 TEM: beam shines like a dot but occasionally spreads

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Email: gul417-at-mail.usask.ca
Name: Guosheng Liu

Organization: U of Saskatchewan

Title-Subject: [Filtered] CM10 TEM: beam shines like a dot but occasionally spreads normal shape.

Message: Hello all,

Our Philips CM10 TEM got a beam issue---it looked like in a dark field mode, concentrated as a tiny
point and could not be spread out. But suddenly it might be normal for a few seconds to less than a
minute without touching anywhere, then went back to point beam again.

The ODP/IGP vacuum readings are not ideal but seems working before. Anything else could be the
cause of this problem? Where/how to check first?

Your help and suggestion are greatly appreciated.

Thank you in advance.

Guosheng

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From: benada-at-biomed.cas.cz
Date: Fri, 28 Aug 2015 01:58:22 -0500
Subject: [Microscopy] Re: viaWWW:CM10 TEM: beam shines like a dot but

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Helo Guosheng,
It might be the board regulating current for C2 condenser. You can
check the current passing through C2 in this way:
Go to PARAMETERS page on information CRT and press DISPLAY
CURRENTS. Then you can monitor second condenser (C2) current.
Go to SINGLE mode, select C2 and look what happens when you turn the
INTENSITY button back and forth.
If there is no change in current level for C2 then the trouble might be
in the current regulating board.

Best regards Oldrich

--
Oldrich Benada
Institute of Microbiology AS CR, v.v.i.
Videnska 1083
142 20 Prague 4
Czech Republic


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} Name: Guosheng Liu
}
} Organization: U of Saskatchewan
}
} Title-Subject: [Filtered] CM10 TEM: beam shines like a dot but
} occasionally spreads normal shape.
}
} Message: Hello all,
}
} Our Philips CM10 TEM got a beam issue---it looked like in a dark
} field mode, concentrated as a tiny point and could not be spread out.
} But suddenly it might be normal for a few seconds to less than a
} minute without touching anywhere, then went back to point beam again.
}
} The ODP/IGP vacuum readings are not ideal but seems working before.
} Anything else could be the cause of this problem? Where/how to check
} first?
}
} Your help and suggestion are greatly appreciated.
}
} Thank you in advance.
}
} Guosheng
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From: ben.micklem-at-pharm.ox.ac.uk
Date: Fri, 28 Aug 2015 04:16:00 -0500
Subject: [Microscopy] viaWWW:CM10 TEM: beam shines like a dot but

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Definitely sounds like one or more of the lenses is cutting out (check them all on Parameters page, as Oldrich suggests).

We are having the same issue with our CM10- caused by insufficient water flow through the heatsinks (MRU and LMH) in the lower right of the microscope (if you feel the two hoses at almost ground level to the left of the rotary pump, one of them will be the return with very hot water). The water flows around the column (top and bottom circuits of the column in parallel), then through the MRU and LMH heatsinks, then out of the microscope (the diff. pump water circuit is in parallel with this).

If the microscope is one for an extended period, as well as the MRU/LMH water causing the lenses to cut out, we also have the lower part of the column heating up (felt by hand on the surface). We are going to solve it by looping out the MRU+LMH part of the circuit, and instead feeding it a separate water supply from our chiller circuit.

There is a blow-off option that can help clear this circuit. The connector for this is on the right when you have the back of the microscope off. When you pull out the connector, a switch will turn off the microscope automatically. This quick-coupler is then connected to the inlet to push out water + debris from the lenses, MRU, LMH part of the microscope's cooling circuit. If you do this, make sure you know where the air will go when it is forced out of the return line of the microscope- we have had engineers make a fountain out the top of our chiller. We have a drain we can open.

Good luck,

Ben
--
Research Support Manager and Acting IT Manager
MRC Brain Network Dynamics Unit,
University of Oxford Department of Pharmacology,
Mansfield Road, Oxford, OX1 3TH, United Kingdom.
Telephone: 01865 271649 {http://www.mrcbndu.ox.ac.uk/}







On 28/08/2015 09:06, "benada-at-biomed.cas.cz" {benada-at-biomed.cas.cz} wrote:

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From: microscopy.listserver-at-gmail.com
Date: Fri, 28 Aug 2015 07:11:45 -0500
Subject: [Microscopy] viaWWW:September Advanced EELS Training Schools (UK and France) 2015.

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Title-Subject: EELS Training in UK in September 2015

Message: If you want to advance your EELS knowledge, the University of Warwick in the UK is offering
an introductory to intermediate level training program on EELS. You can register online at:
http://www.gatan.com/company/events/uk-eels-school-2015

Title-Subject: Advanced EELS Training in France in September 2015

Message: We are offering an advanced EELS and EFTEM training school at Maison MINATEC, Grenoble,
France on September 29 - October 2, 2015. This is an intensive 4 day training school that
incorporates lectures, computer laboratories and microscope practical classes to provide
participants with comprehensive, hands-on training on advanced electron energy loss spectroscopy
(EELS) and energy-filtered TEM (EFTEM) topics.

You can register online at:
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From: js51-at-princeton.edu
Date: Fri, 28 Aug 2015 08:07:06 -0500
Subject: [Microscopy] viaWWW:CM10 TEM: beam shines like a dot but occasionally spreads

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Hello Guosheng,

If the beam is a pinpoint of light, the most likely cause is water flow. You will see on the Lens Current page that all the main lens values will be close to 0. You should have water flow gauges that are located near the mechanical pump. These have magnetic floats in them and if the flow is low, they will trip the sensor located near the bottom of the gauge which will shut all the lens off. These gauges only read the flow going to the upper and lower column. I would install two more gauges that read the water flow to the ODP and the Electronics. The proper water flow through each leg is 0.7 liters/ minute.

John
Ex Philips Service

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Email: gul417-at-mail.usask.ca
Name: Guosheng Liu

Organization: U of Saskatchewan

Title-Subject: [Filtered] CM10 TEM: beam shines like a dot but occasionally spreads normal shape.

Message: Hello all,

Our Philips CM10 TEM got a beam issue---it looked like in a dark field mode, concentrated as a tiny point and could not be spread out. But suddenly it might be normal for a few seconds to less than a minute without touching anywhere, then went back to point beam again.

The ODP/IGP vacuum readings are not ideal but seems working before. Anything else could be the cause of this problem? Where/how to check first?

Your help and suggestion are greatly appreciated.

Thank you in advance.

Guosheng

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From: ben.micklem-at-pharm.ox.ac.uk
Date: Fri, 28 Aug 2015 11:09:02 -0500
Subject: [Microscopy] viaWWW:CM10 TEM: beam shines like a dot but

Contents Retrieved from Microscopy Listserver Archives
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Hello,

Also wanted to mention that there are regulators that you can you use to adjust the water flow to the different legs of the water circuit. If you have those max out, then you will need to what is blocking it.

John

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Email: gul417-at-mail.usask.ca
Name: Guosheng Liu

Organization: U of Saskatchewan

Title-Subject: [Filtered] CM10 TEM: beam shines like a dot but occasionally spreads normal shape.

Message: Hello all,

Our Philips CM10 TEM got a beam issue---it looked like in a dark field mode, concentrated as a tiny point and could not be spread out. But suddenly it might be normal for a few seconds to less than a minute without touching anywhere, then went back to point beam again.

The ODP/IGP vacuum readings are not ideal but seems working before. Anything else could be the cause of this problem? Where/how to check first?

Your help and suggestion are greatly appreciated.

Thank you in advance.

Guosheng

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From ferguson651651615axuht-at-gmail.com Fri Aug 28 10:43:29 2015
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On 28/08/2015 16:05, "js51-at-princeton.edu" {js51-at-princeton.edu} wrote:

} Hello Guosheng,
}
} If the beam is a pinpoint of light, the most likely cause is water flow. You will see on the Lens Current page that all the main lens values will be close to 0. You should have water flow gauges that are located near the mechanical pump. These have magnetic floats in them and if the flow is low, they will trip the sensor located near the bottom of the gauge which will shut all the lens off. These gauges only read the flow going to the upper and lower column. I would install two more gauges that read the water flow to the ODP and the Electronics. The proper water flow through each leg is 0.7 liters/ minute.
}
} John
} Ex Philips Service
}

I don't know if the float meters were a later modification on CM10s, but ours doesn't have them, it just uses a temperature sensor in the heatsinks in the electronics part of the circuit. Our CM100 has all the float meters as you describe.

Ben

--
Research Support Manager and Acting IT Manager
MRC Brain Network Dynamics Unit,
University of Oxford Department of Pharmacology,
Mansfield Road, Oxford, OX1 3TH, United Kingdom.
Telephone: 01865 271649 {http://www.mrcbndu.ox.ac.uk/}


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From: js51-at-princeton.edu
Date: Fri, 28 Aug 2015 14:37:25 -0500
Subject: [Microscopy] viaWWW:CM10 TEM: beam shines like a dot but

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Hello,

Yes, you are correct. The early CM10's did not have a site glass for the water flow. In which the water had only two splits in the circuit. From the water input, half went through the ODP and half goes thru the Lens and electronics. The Power Booster safety circuit shuts off the lens if the heatsink get too hot. I would still recommend adding the flow gauges to adjust the proper water flow.

John

-----Original Message-----
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Sent: Friday, August 28, 2015 2:22 PM
To: John J. Schreiber


On 28/08/2015 16:05, "js51-at-princeton.edu" {js51-at-princeton.edu} wrote:

} Hello Guosheng,
}
} If the beam is a pinpoint of light, the most likely cause is water flow. You will see on the Lens Current page that all the main lens values will be close to 0. You should have water flow gauges that are located near the mechanical pump. These have magnetic floats in them and if the flow is low, they will trip the sensor located near the bottom of the gauge which will shut all the lens off. These gauges only read the flow going to the upper and lower column. I would install two more gauges that read the water flow to the ODP and the Electronics. The proper water flow through each leg is 0.7 liters/ minute.
}
} John
} Ex Philips Service
}

I don't know if the float meters were a later modification on CM10s, but ours doesn't have them, it just uses a temperature sensor in the heatsinks in the electronics part of the circuit. Our CM100 has all the float meters as you describe.

Ben

--
Research Support Manager and Acting IT Manager MRC Brain Network Dynamics Unit, University of Oxford Department of Pharmacology, Mansfield Road, Oxford, OX1 3TH, United Kingdom.
Telephone: 01865 271649 {http://www.mrcbndu.ox.ac.uk/}


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From: microscopy.listserver-at-gmail.com
Date: Fri, 28 Aug 2015 18:32:39 -0500
Subject: [Microscopy] viaWWW:TEM processing of Histology Section

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Name: Ravi

Title-Subject: [Filtered] TEM processing of Histology Section.

Message: Dear Listener,

I have one user, who wants to carry out TEM analysis of his Histology samples. He has only histology
slide stained with H&E.

Has anyone done this kind of work before? Kindly give the best suggestion from your experience.

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From: microscopy.listserver-at-gmail.com
Date: Fri, 28 Aug 2015 18:33:54 -0500
Subject: [Microscopy] viaWWW:CM10 TEM pinpoint beam problem --Thank all of you for the help

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Email: gul417-at-mail.usask.ca
Name: Guosheng Liu

Organization: University of Saskathewan

Title-Subject: [Filtered] CM10 TEM pinpoint beam problem --Thank all of you for the help

Message: Dear Lister,

First of all I want to thank you for the prompt replies regarding the pinpoint beam issue on our CM10.

In summary ,majority of the comments considered that the bad water flow led to the LENS current
On/OFF intermittently due to the lens power heatsink's overheating. This is most likely what is
happening in our CM10. Our CM10 has been with cooling issue for years. We have replaced a new
circulating water chiller for the system, and also monitor the temperature for the column with
temperature-sensor-type stickers. We have used CLR to clean the cooling system regularly (last time
was half year ago). Even though, the temperature of bottom part of the gun column is still high,
around 82-96F(28-35C) during operation (e.g. 80KV). The temp setting for the chiller is at 14C now.
Definitely there is still some clog in the cooling system. The top part of the column tempertaure is
used to be OK (always around 20C) but today it is 28C . Anyhow I'll first do the CLR flush (at least
overnight) to try to boost water flow.

When I check the lens current, it indicated that Projector (1&2)Lens were down. Here are the
readings (twice) when beam was normal and pinpoint:
______________________________
C1 424/294 424/424 mA
Obj 110/115 120/117
Diff 787/549 787/795
Interm 3/3 3/124
Proj1 2190/1522 5/4
Proj2 1789/1248 -1/-1
_____________________________

My question is: is there any way to check the cooling hose from outside of the column which links
to the projector lens part?

Except for the bad cooling water for lens, it also could be the problem related to the failure of C2
condenser board, projector lens' fuse, or dirty beam path or even HT board as others pointed out in
the comments. I'll check these later if not working.

Thanks again.

Guosheng



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From: PhillipsT-at-missouri.edu
Date: Sat, 29 Aug 2015 15:04:22 -0500
Subject: [Microscopy] viaWWW:TEM processing of Histology Section

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If you mean preparing an H&E section for TEM, I suspect you are in for a disappointing result. I haven't done it for an H&E section but have done it for an unstained paraffin section. I osmicated the section, infiltrated with resin and polymerized resin on the surface of the slide. I then popped it off the slide using liquid nitrogen and mounted en face on an epoxy block so I could section it. The tissue was recognizable in the TEM but he quality of the tissue preservation was terrible. It looked vacuolated. I am always amazed how "acceptable" tissue fixation looks like at the LM level but how bad it looks like once you go to TEM. TEM is tedious and demanding enough with optimally fixed tissues so it is best to handicapping your chances before you even start. Unless the tissue is something incredibly rare, it is worth repeating with proper fixation and embedding for TEM.

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/

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Title-Subject: [Filtered] TEM processing of Histology Section.

Message: Dear Listener,

I have one user, who wants to carry out TEM analysis of his Histology samples. He has only histology slide stained with H&E.

Has anyone done this kind of work before? Kindly give the best suggestion from your experience.

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From: microscopy.listserver-at-gmail.com
Date: Mon, 31 Aug 2015 07:24:35 -0500
Subject: [Microscopy] viaWWW:Elastic montage/stitching of point-maps

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I will second that Nizetian wisdom. As I just posted in response to someone wondering if a paraffin section could be prepared for electron microscopy, TEM is tedious and demanding enough with optimally fixed tissues so it is best to avoid handicapping your chances before you even start. Unless the tissue is something incredibly rare, it is worth repeating with proper fixation and embedding for TEM.

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


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Hi Joseph!

Summary (you don't need the details to take a decision):
"not optimal" is mildly put.
Leaving biological material unfixed at -18°C (it is probably the worst method to preserver biological material) and expecting to see anything meaningful in TEM is not realistic.
If you want to use TEM, you are interested in fine morphology right? Well you won't get fine morphological information this way.

Details (if you want to know why):
1) Upon freezing and especially slowly freezing like it happens when you put a specimen at -18°C, the water in the tissue and cells crystallizes. Nice spiky crystals.
The crystals don't care about the biological structures (like membranes), they grow through them, perforating them.
Upon thawing, the membrane are literally cut in pieces, leaving you with a biological soup with very few original morphological properties.
2) The cellular enzymes have had plenty of time to do whatever job they have to do
3) Big osmotic issues. Slowly freezing produces extreme osmotic forces because while some water freezes the remaining water which is in liquid state sees its salt concentration dramatically increase

Hope you can convince your colleagues to invest time and money in something more useful (like reading a book about the usefulness of fixatives).

Stephane





--------------------------------------------
On Fri, 8/21/15, microscopy.listserver-at-gmail.com {microscopy.listserver-at-gmail.com} wrote:

Subject: [Microscopy] viaWWW:Frozen Insects for TEM
To: nizets2-at-yahoo.com
Date: Friday, August 21, 2015, 1:45 AM




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Email: joseph.mowery-at-ars.usda.gov
Name: Joseph Mowery

Organization: USDA ARS SGIL ECMU

Title-Subject: [Filtered] Frozen Insects for TEM

Message: Greetings,

We're interested in processing moths for TEM, but the moths have been stored in a 0F (-18C) freezer for a few weeks or months. Will it still be possible to immerses these moths in glutaraldehyde and process them for conventional TEM? I understand the ultrastructure may not be optimal, but has anyone had success processing frozen insects for TEM?

Thanks,
-Joe

Joe Mowery | Biologist
Electron and Confocal Microscopy Unit
USDA Agricultural Research Service
Lab 301-504-9027 | Mobile 817-821-8566
joseph.mowery-at-ars.usda.gov


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Email: kaltbeit-at-mpip-mainz.mpg.de
Name: Anke Kaltbeitzel

Organization: MPI Polymer-research

Title-Subject: [Filtered] Elastic montage/stitching of point-maps

Message: I'm trying to stitch overlapping SEM images. The image series also includes an overview
screen with less resolution.

Due to electrostatic charging there is elastic deformation of the SEM image. Sputtering or averaging
during image acquisition won't help because they reduce the image quality.
However, using beads for registration should make it a task that can be solved. Of course in some
images some beads are missing after object recognition (especially for the overview) but most points
are detected.

The naked eye has little trouble in matching the beads in the images.
So I thought it was an easy task for image analysis software...

I tried TRACKEM2 for elastic montage, but it failed (for me) to register the beads, maybe the
elastic algorithm works better for larger scale features. Defining landmarks seems to work only for
affine transformations in TRACKEM2(and this one is definitly elastic)
The coherent point drift algorithm should work for elastic bead registration. But the overlap of the
images is never } 50%.

Is there some software that easily solves the problem?


Anke Kaltbeitzel

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From: W.Muss-at-salk.at
Date: Mon, 31 Aug 2015 09:42:10 -0500
Subject: [Microscopy] Re: TEM processing of Histology Section

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

APOLOGIZE for Lengthiness-

Dear Ravi,

It is not (IT HAS NOT BEEN!) often that {someone} (via the MSA Listserver) requests such measures/procedures.. this probably due to the decrease of med.-diagnostic EM-ists (unfortunately many medico-diagnostic EM-Labs have been and further will be extincted) out in the wild. He/she must be a young pathologist or clinician, I guess.

Seconding 100% Prof. Phillips' opinion (and making no difference between an H&E stained = deparaffinized or unstained paraffin section):
{ Garbage in {-} Garbage out } :
If the tissue initially fixed poorly then poor / bad preservation of ultrastructural detail will be the "natural" consequence.

BUT:
SOMETIMES careful and sophisticated reprocessing of - selected areas of - either tissue from whole paraffin blocks or also a H&E-section only
can yield some interesting and unforeseen result in terms of diagnosis (viral, bacteria, etc. etc., see also below).

So in the end:
It always will depend on the circumstance and TASK of the study whether such a re-embedding/reprocessing
(which might be sumptuous and/or a bit complex to accomplish) will yield something of value
(e. g. especially something diagnostic ..) - worth to be documented.

In my 35 years EM-career I have done about 100-150 re-embeddings (from paraffin blocks as well as from deparaffinized H&E and or pre-embedding-IHC-sections) and the scientifically useable yield was -estimated - about 65-70% [esp. for evaluating the preembedding Immunolocaliztion of markers in (DAB-treated)IHC sections ].


There have been some articles in MICROSCOPY TODAY*), and other journals**) on that matter, and I know about there also are some questions and replies available within the MSA-Listserver Archives***).

Principal keywords for search in the MSA archives or also a {google search} :
"reprocessing", "reembedding", "re-embedding",

Some examples for your convenience: :
*)e.g.:
ESTRADA JC et al, TEM of Paraffin-Embedded H&E Stained Sections for viral Diagnosis (an Unusual Papovavirus Case)
Microscopy Today, Sept. 2005, pp. 22 - and - 24 (23 = full page advertisement)


**)
see e.g. also [naturally not exhaustive!]:
J. BURNS, [Technical Methods] Preparation of thin epoxy resin sections from thick sections of paraffin-embedded material in:
J Clin Path 23(7),1970 p.643-645

or:
Van den Bergh Weerman M.A., DINGEMANS K.P.: [New Techniques] Rapid deparaffinization for electron microscopy, Ultrastructural Pathology, 7:55-57,1984

or:
S. Widéhn, and L.-G. Kindblom: [New Techniques] A Rapid and Simple Method for Electron Microscopy of Paraffin-Embedded Tissue
Ultrastructural Pathology, 12: 131 - 136, 1988

or
LIGHEZAN R, et al. {The value of the reprocessing method of paraffin-embedded biopsies for transmission electron microscopy}
in: Romanian Journal of Morphology and Embryology 2009, 50(4):613-617
Abstract
Transmission electron microscopy (TEM) implies an elaborate preparation protocol that includes: fixation in glutaraldehyde followed by
osmium tetraoxide postfixation, specimen dehydration, infiltration, resin embedding, ultrathin sectioning and staining with heavy metal
salts. The aim of TEM is to examine the ultrastructure of specimens in ways that cannot be examined using other equipments or
techniques. In some cases, when the requirement for TEM were made after tissue collection, useful information can be obtained from
reprocessing the formalin-fixed, wax-embedded tissue used for light microscopy.
Keywords: reprocessing method, transmission electron microscopy.

***) e.g. {Reprocessing paraffin material to EM} : thread: Sat, 22 Jan 2005 11:50:44 -0600 until Tue, 25 Jan 2005 07:24:15 -0600

If you need articles (pdf) (as mentioned & more...) you certainly could ask me to send them off list.

Best wishes, good luck,
and regards,
Wolfgang MUSS PhD
SALZBURG, Austria
Member of MSA






} -----Ursprüngliche Nachricht-----
} Von: PhillipsT-at-missouri.edu [mailto:PhillipsT-at-missouri.edu]
} Gesendet: Samstag, 29. August 2015 22:43
} An: Muß Wolfgang
} Betreff: [Microscopy] Re: TEM processing of Histology Section
}
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}
} If you mean preparing an H&E section for TEM, I suspect you are in for
} a disappointing result.
} I haven't done it for an H&E section but have done it for an unstained
} paraffin section.
} I osmicated the section, infiltrated with resin and polymerized resin
} on the surface of the slide.
} I then popped it off the slide using liquid nitrogen and mounted en
} face on an epoxy block so I could section it.
} The tissue was recognizable in the TEM but he quality of the tissue
} preservation was terrible.
} It looked vacuolated. I am always amazed how "acceptable" tissue
} fixation looks like at the LM level but how bad it looks like once you
} go to TEM.
} TEM is tedious and demanding enough with optimally fixed tissues so it
} is best to handicapping your chances before you even start.
} Unless the tissue is something incredibly rare, it is worth repeating
} with proper fixation and embedding for TEM.
}
} Thomas E. Phillips, Ph.D
} Professor of Biological Sciences
} Director, Molecular Cytology Core
} 2 Tucker Hall
} University of Missouri
} Columbia, MO 65211-7400
} 573-882-4712 (office)
} 573-882-0123 (fax)
} phillipst-at-missouri.edu
}
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} http://www.biotech.missouri.edu/mcc/
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} Subject: [Microscopy] TEM processing of Histology Section
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} Name: Ravi
} Title-Subject: [Filtered] TEM processing of Histology Section.
} Message: Dear Listener,
} I have one user, who wants to carry out TEM analysis of his Histology
} samples. He has only histology slide stained with H&E.
} Has anyone done this kind of work before? Kindly give the best
} suggestion from your experience.
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25, 38 -- Subject: [Microscopy] Re: TEM processing of Histology Section
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From: microscopy.listserver-at-gmail.com
Date: Wed, 2 Sep 2015 07:24:32 -0500
Subject: [Microscopy] viaWWW:ImmunoGold Fall Workshop

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Ravi,

I know you just asked if we've already done this kind of work, not what we think about it.
However I must second both Thomas and Wolfgang. Technically it is not such a big challenge but we like to know if what we do makes sense somehow.
You rarely give yourself the hassle of TEM preparation because it is cool (although it IS cool), usually one has a precise purpose in mind.
If your colleague/client wants fine morphological information, he will be very disappointed.
Regards,
Stephane

--------------------------------------------
On Mon, 8/31/15, W.Muss-at-salk.at {W.Muss-at-salk.at} wrote:

Subject: [Microscopy] Re: TEM processing of Histology Section
To: nizets2-at-yahoo.com
Date: Monday, August 31, 2015, 4:47 PM




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APOLOGIZE for Lengthiness-

Dear Ravi,

It is not (IT HAS NOT BEEN!) often that {someone} (via
the MSA Listserver) requests such
measures/procedures..  this probably due to the
decrease of med.-diagnostic EM-ists (unfortunately many
medico-diagnostic EM-Labs have been and further will be
extincted) out in the wild. He/she must be a young
pathologist or clinician, I guess.

Seconding 100% Prof. Phillips' opinion (and making no
difference between an H&E stained = deparaffinized or
unstained paraffin section):
{  Garbage in {-} Garbage out  } :
If the tissue initially fixed poorly then poor / bad
preservation of ultrastructural detail will be the "natural"
consequence.

BUT:
SOMETIMES careful and sophisticated reprocessing of -
selected areas of -  either tissue from whole paraffin
blocks or also a H&E-section only
can yield some interesting and unforeseen result in terms of
diagnosis (viral, bacteria, etc. etc., see also below).

So in the end:
It always will depend on the circumstance and TASK of the
study whether such a re-embedding/reprocessing
(which might be sumptuous and/or a bit complex to
accomplish) will yield something of value
(e. g. especially something diagnostic ..) - worth to be
documented.

In my 35 years EM-career I have done about 100-150
re-embeddings (from paraffin blocks as well as from
deparaffinized H&E and or pre-embedding-IHC-sections)
and the scientifically useable yield was -estimated - about
65-70% [esp. for evaluating the preembedding
Immunolocaliztion of markers in (DAB-treated)IHC sections
].


There have been some articles in MICROSCOPY TODAY*), and
other journals**) on that matter, and I know about there
also are some questions and replies available within the
MSA-Listserver Archives***).

Principal keywords for search in the MSA archives or also a
{google search} : 
"reprocessing", "reembedding", "re-embedding",

Some examples for your convenience:  :
*)e.g.:
ESTRADA JC et al, TEM of Paraffin-Embedded H&E Stained
Sections for viral Diagnosis (an Unusual Papovavirus Case)
Microscopy Today, Sept. 2005, pp. 22 - and - 24 (23 = full
page advertisement)


**)
see e.g. also [naturally not
exhaustive!]:   
J. BURNS, [Technical Methods] Preparation of thin epoxy
resin sections from thick sections of paraffin-embedded
material in:
J Clin Path 23(7),1970 p.643-645

or:
Van den Bergh Weerman M.A., DINGEMANS K.P.: [New Techniques]
Rapid deparaffinization for electron microscopy,
Ultrastructural Pathology, 7:55-57,1984

or:
S. Widéhn, and L.-G. Kindblom: [New Techniques] A Rapid and
Simple Method for Electron Microscopy of Paraffin-Embedded
Tissue
Ultrastructural Pathology, 12: 131 - 136, 1988

or
LIGHEZAN R, et al.  {The value of the reprocessing
method of paraffin-embedded biopsies for transmission
electron microscopy}
in:  Romanian Journal of Morphology and Embryology
2009, 50(4):613-617
Abstract
Transmission electron microscopy (TEM) implies an elaborate
preparation protocol that includes: fixation in
glutaraldehyde followed by
osmium tetraoxide postfixation, specimen dehydration,
infiltration, resin embedding, ultrathin sectioning and
staining with heavy metal
salts. The aim of TEM is to examine the ultrastructure of
specimens in ways that cannot be examined using other
equipments or
techniques. In some cases, when the requirement for TEM were
made after tissue collection, useful information can be
obtained from
reprocessing the formalin-fixed, wax-embedded tissue used
for light microscopy.
Keywords: reprocessing method, transmission electron
microscopy.

***) e.g. {Reprocessing paraffin material to EM} :
thread: Sat, 22 Jan 2005 11:50:44 -0600  until Tue, 25
Jan 2005 07:24:15 -0600

If you need articles (pdf) (as mentioned & more...) you
certainly could ask me to send them off list.

Best wishes, good luck,
and regards,
Wolfgang MUSS PhD
SALZBURG, Austria
Member of MSA






} -----Ursprüngliche Nachricht-----
} Von: PhillipsT-at-missouri.edu
[mailto:PhillipsT-at-missouri.edu]
} Gesendet: Samstag, 29. August 2015 22:43
} An: Muß Wolfgang
} Betreff: [Microscopy] Re: TEM processing of Histology
Section
}
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}
} If you mean preparing an H&E section for TEM, I
suspect you are in for
} a disappointing result.
} I haven't done it for an H&E section but have done
it for an unstained
} paraffin section.
} I osmicated the section, infiltrated with resin and
polymerized resin
} on the surface of the slide.
} I then popped it off the slide using liquid nitrogen
and mounted en
} face on an epoxy block so I could section it.
} The tissue was recognizable in the TEM but he quality
of the tissue
} preservation was terrible.
} It looked vacuolated. I am always amazed how
"acceptable" tissue
} fixation looks like at the LM level but how bad it
looks like once you
} go to TEM.
} TEM is tedious and demanding enough with optimally
fixed tissues so it
} is best to handicapping your chances before you even
start.
} Unless the tissue is something incredibly rare, it is
worth repeating
} with proper fixation and embedding for TEM.
}
} Thomas E. Phillips, Ph.D
} Professor of Biological Sciences
} Director, Molecular Cytology Core
} 2 Tucker Hall
} University of Missouri
} Columbia, MO 65211-7400
} 573-882-4712 (office)
} 573-882-0123 (fax)
} phillipst-at-missouri.edu
}
} http://www.biology.missouri.edu/faculty/phillips.html
} http://www.biotech.missouri.edu/mcc/
}
} -----Original Message-----
} X-from: microscopy.listserver-at-gmail.com
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} Sent: Friday, August 28, 2015 6:42 PM
} To: Phillips, Thomas E.
} Subject: [Microscopy] TEM processing of Histology
Section
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} Email: ravi.thakkar369-at-gmail.com
} Name: Ravi
} Title-Subject: [Filtered] TEM processing of Histology
Section.
} Message: Dear Listener,
} I have one user, who wants to carry out TEM analysis of
his Histology
} samples. He has only histology slide stained with
H&E.
} Has anyone done this kind of work before? Kindly give
the best
} suggestion from your experience.
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5, 38 -- Subject: Re: [Microscopy] Re: TEM processing of Histology Section
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From hanja07656515151kuzqo-at-gmail.com Tue Sep 1 17:54:36 2015
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Email: stacie-at-ems-secure.com
Name: Stacie Kirsch

Organization: Electron Microscopy Sciences

Title-Subject: [Filtered] ImmunoGold Fall Workshop

Message: Aurion and Electron Microscopy Sciences are pleased to announce the Fall Workshop, Aurion
ImmunoGold Silver Staining, to be held at the University of Maryland's Electron Microscopy Core
Imaging Facility in Baltimore, October 28-30, 2015. For more information, visit
http://www.emsdiasum.com/microscopy/products/immunogold/workshop.aspx or contact me directly.
Thank you,
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From: microscopy.listserver-at-gmail.com
Date: Wed, 2 Sep 2015 07:25:29 -0500
Subject: [Microscopy] viaWWW:Free JEOL 840A - SEM

Contents Retrieved from Microscopy Listserver Archives
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Email: lfox1-at-luc.edu
Name: Linda M Fox

Organization: Loyola University SSOM - Core Imaging Facility

Title-Subject: [Filtered] Free JEOL 840A - SEM

Message: Free to a Good Home
JEOL scanning electron microscope - JSM-840A
-all manuals, service records and expendable supplies
Purchased 1986
SEM working well, not in use for the past year, but under service contract until Aug 2012.
Has digital frame grabber/software/computer also Polaroid camera
Computer for digital imaging no longer boots up properly.
Ancillary equipment: Polaron critical point dryer (and a spare for parts) and Polaron sputter
coater, misc stubs, silver paint, carbon blanks etc.
**Possibility of a used Haskaris water chiller**
Take everything – you move it.


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From: microscopy.listserver-at-gmail.com
Date: Wed, 2 Sep 2015 07:26:14 -0500
Subject: [Microscopy] viaWWW:EELS & EFTEM School October 2015 In California

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Email: jhyun-at-gatan.com
Name: John Hyun

Organization: Gatan, Inc.

Title-Subject: [Filtered] EELS & EFTEM School October 2015 In California

Message: October13-16, 2015
Gatan R&D Headquarters, Pleasanton, CA

This course reviews the basic theory and practice of EELS imaging and analysis in the TEM, but its
main emphasis is on practical techniques, optimum deployment of analytical TEM hardware and software
systems, and advanced EELS and EFTEM applications. Some prior experience with EELS, EFTEM, and
analytical TEM systems is recommended, as is a good familiarity with TEM/STEM instrumentation and
techniques. By the end of the course, participants can expect to know how best to optimize the
performance of their EELS hardware as well as their EELS and EFTEM experimental setups in order to
capture and extract the maximum amount of information from their TEM samples.

If you are interested, please register online at:
http://www.gatan.com/company/events/eels-eftem-analysis-training-school-october-2015

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From: microscopy.listserver-at-gmail.com
Date: Wed, 2 Sep 2015 18:48:59 -0500
Subject: [Microscopy] viaWWW:Free SEM...now spoken for

Contents Retrieved from Microscopy Listserver Archives
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The fall classes have started, schedules are filling up, we are hoping you will have room for the November 4th Fall MRL conference featuring Bioengineering!


We have some world class speakers in bioengineering featured.


You can find out more about the speakers, the student and post doc competition, and the vendor fair here:
http://mrl.illinois.edu/mrl-biological-conference-2015




COMPETITORS:

Student and post doc competitors will earn a monetary fee, you need only to have a biological topic that includes equipment we use ( i.e. AFM, TEM, FIB, SEM, Light Microscopy, Confocal etc) Both a 15 min speech and a poster is expected from each participant.
Enter the competition at the online registration, there will be a box for you to check, be prepared to upload a 1/2 page abstract, and if you are chosen for the competition, the registration fee will be refunded to you.


Registration is up, and is only $20.
For out of town guests, we have a hotel only 2 small blocks away.



Email me with questions.

Lou Ann







VENDORS!!

We have a vendor fair for the participants.

If you have not registered already:

Vendors will have a chance for a one day table display, with perhaps opportunity for demonstrations ( email me), for $200. The next day, which is open for tours and my open lab, but if you have demostraions, you are also welcome to stay for the next day, we can set you up for demo’s the 2nd day.


VENDOR REGISTRATION : https://my.mrl.illinois.edu/eventreg/



Registration includes one vendor and one table, additional folks to your table only have to register $20 as a participant. ( covering food etc with this)


I hope to see you there, having great vendors is what makes this conference ever so much more special!



Thanks,

Lou Ann

{ { { { { { { { { { { { { { { { {} } } } } } } } } } } } } } } }
Lou Ann Miller
Biological Electron Microscopy
Frederick Seitz Materials Research Laboratory
Lab Room 125 Office 374 MRL
104 South Goodwin Ave
Urbana, IL 61801
Campus mail code: MC-230
Hours: 7am-3:30 pm

217-244-1567
lamiller-at-illinois.edu
http://mrl.illinois.edu



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41, 38 -- From lamiller-at-illinois.edu Wed Sep 2 09:37:56 2015
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From ohn.bullocknewscafyp-at-gmail.com Wed Sep 2 16:04:03 2015
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Email: lfox1-at-luc.edu
Name: Linda M Fox

Organization: Loyola University SSOM - Core Imaging Facility

Title-Subject: [Filtered] Free SEM...now spoken for

Message: Thank all of you who expressed interest in our JEOl 840A SEM.
We now have several interested parties. If any or all fall through, I will re-post for others to
throw a hat into the ring.

Thank you all,

Linda

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From: nizets2-at-yahoo.com
Date: Thu, 3 Sep 2015 02:15:52 -0500
Subject: [Microscopy] fluctuating temperature in TEM room

Contents Retrieved from Microscopy Listserver Archives
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Dear Listers!

we noticed changes of temperature in the TEM room so I installed a thermometer.
The temperature fluctuates by approx. 3°C (21.4-24.1°C) in the day or overnight.
We have a Tecnai G20 and a powerful air conditioning system.
I know that temperature should be as constant as possible but I don't know how much it is important.
What inconvenients should I expect with such a temperature fluctuation? What are the specifications of this instrument?

Best regards,
Stephane


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From: lists-at-nexperion.net
Date: Thu, 3 Sep 2015 03:43:18 -0500
Subject: [Microscopy] Re: fluctuating temperature in TEM room

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Stephane,

} What inconvenients should I expect with such a temperature fluctuation? What are the specifications of this instrument?

The specs of your microscope allow a maximum temperature change of 1 deg C/24 h, 0.5 deg C/h, or 0.1 deg C/min.

One problem you might experience because of "very" fast temperature changes is specimen drift.

Hope that helps, cheers,

Guenter


--
Dr. Guenter Resch
Nexperion e.U. - Solutions for Electron Microscopy - www.nexperion.net
Mattiellistrasse 3/17, 1040 Vienna, Austria - Phone +43 664 94 17 210
Registered at Commercial Court Vienna, FN 397677w - VAT Reg. ATU67962234

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From: nizets2-at-yahoo.com
Date: Thu, 3 Sep 2015 06:23:44 -0500
Subject: [Microscopy] Re: viaWWW:Biological sample preparation method for element analysis

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Stephane

Sure the room temperature may have an effect on TEM performance over time,
but that mainly relates to the power supplies and electronics. Provided your
room temperature falls within the manufacturers specifications you should
not have a problem. I have worked with instruments in hot countries well
outside the recommendations and still not had problems.

If we consider the average exposure time, then temperature stability over
that time is not a problem. There are many parts of the instrument that
shield you from room temperature interference; general lens bulk, water
cooling etc. You are more likely to suffer from magnetic field problems
than any other in the modern day environment.

My only advice, if you worry about specimen stage stability, is to store the
specimen rod IN THE MICROSCOPE! In this way the few seconds it will take to
change the specimen will hardly change the rod temperature, and by the time
you are settled in to record images, the rod will be back at "stage
temperature". I have always thought it to be an operating error to store
the specimen rod at room temperature, when it needs to be at specimen stage
temperature. Working at very high resolution the most unstable unit in my
experience is the specimen rod. Remember it is a directional object so a
constant drift direction will be produced.

In the good old days, when we used a round specimen cartridge, the specimen
drift problem was very rare, due to the heat transfer being in all
directions rather than one!

Hope this helps?

Steve

Steve Chapman FRMS
Protrain for Consultancy and Training in Electron Microscopy
+44 (0)7711 606967
web www.emcourses.com



-----Original Message-----
X-from: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Sent: 03 September 2015 08:17
To: protrain-at-emcourses.com

Hi Alice!

What do you mean by "calculate"?
Do you mean concentrations?
EM is not an analytical method, you cannot get moles or mg of Ca per gram tissue or per cell or per mitochondrium with EM.
Calcium is best quantified with mass spectrometry (ICP-MS and related) after isolating mitochondria, but there will be so few Calcium, I wonder if there is any method with enough sensitivity.
If you just need relative comparisons you could use fluorescence labeling, like most people studying calcium in live cells.

Regards,
Stephane

--------------------------------------------
On Thu, 8/20/15, microscopy.listserver-at-gmail.com {microscopy.listserver-at-gmail.com} wrote:

Subject: [Microscopy] viaWWW:Biological sample preparation method for element analysis
To: nizets2-at-yahoo.com
Date: Thursday, August 20, 2015, 1:43 AM




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Email: fengxia.liang-at-med.nyu.edu
Name: Alice Liang

Organization: NYULMC OCS Microscopy Core

Title-Subject: [Filtered] Biological sample preparation
method for element analysis using EDX

Message: We have a project need to calculate calcium amount
in the mitochondria of cultured cells.
We tried once with SEM/EDX using thin section of routine TEM
protocol of GA/OsO4/Epon with HEPES
buffer, and result is not good. There are obvious some heavy
mental contaminants, but we can't
detect Calcium. Any suggestion?

Thanks,
Alice
NYULMC OCS Microscopy Core

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From: CGorman-at-hookecollege.com
Date: Thu, 3 Sep 2015 07:59:12 -0500
Subject: [Microscopy] Transmission Electron Microscopy Short Course

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings,

Hooke College of Applied Sciences, located in Westmont, IL, is offering a Transmission Electron Microscopy short course October 6-8, 2015. In addition to lectures, this course emphasizes hands-on training using state-of-the-art equipment.

For further TEM training details and registration information, please follow the link below:
https://www.mccrone.com/transmission-electron-microscopy-tem-course


Best regards-
__________________________________________________
Chris Gorman
Hooke College of Applied Sciences
850 Pasquinelli Drive
Westmont, IL 60559-5539 USA
630-887-7100




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From: rosey.vandriel-at-deakin.edu.au
Date: Thu, 3 Sep 2015 21:10:46 -0500
Subject: [Microscopy] Buffer choice for TEM of Skeletal Muscle

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello all,
A researcher is about to undertake a TEM study of mammalian skeletal muscle. Several publications report using Sodium Cacodylate buffer as the carrier for the fixation steps. Is there a reason to be using this particular buffer in preference to a HEPES buffered saline or a phosphate buffer of some kind? I am not a fan of cacodylate, however if it is better for some aspects of muscle TEM imaging, I'd like to know what and why.
Tissue will be immersion fixed, postfixed and embedded in an Epon type resin.
Cryo is not an option for us at present.

Thanks in advance,
Rosey

Rosey van Driel
Manager, Transmission Electron Microscopy (TEM)
Institute for Frontier Materials, GTP Research


Deakin University
Geelong Waurn Ponds Campus, Locked Bag 20000, Geelong, VIC 3220
+61 3 52273117
Mobile 0417 399 630
rosey.vandriel-at-deakin.edu.au
www.deakin.edu.au
https://www.deakin.edu.au/research/facilities/electron-microscope/index.php
Deakin University CRICOS Provider Code 00113B


Important Notice: The contents of this email are intended solely for the named addressee and are confidential; any unauthorised use, reproduction or storage of the contents is expressly prohibited. If you have received this email in error, please delete it and any attachments immediately and advise the sender by return email or telephone.

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From: matthew.weyland-at-monash.edu
Date: Thu, 3 Sep 2015 21:25:28 -0500
Subject: [Microscopy] Re: fluctuating temperature in TEM room

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Hi Stephane

The affect on your system will depend on what you are trying to do with
it. If you are using the instrument at moderate magnifications and not
using STEM or EELS then you won't see too many problems. The change in
temperature relative to your column and electronics temperature will
induce alignment as well as specimen drift, for STEM, HRTEM, EELS etc
this will cause you to lose performance and have issues with stability
over extended periods.

You say you have a "powerful" a/c system. The issue may be it is TOO
powerful, a/c systems are designed to generate a stable temperature with
by operating continually with a certain load, if the load it too small
it will constantly cycle on/off cooling causing the exact problem you
have. You can test this by increasing the heat load in the room (say a
few bar heaters) and seeing if you get an improvement. Not a very green
long term solution but could help you justify a change. Another option
is putting computer servers in the room as well, these generate lots of
extra load. Another potential problem is the location of the temperature
sensor relative to the room airflow, if it is directly in line with the
output flow it could be over cooled, tricking the system into thinking
it needs to shut off and on. A "ductsock" on the a/c out will take away
any heterogeneous flow and minimise this problem.

Hope that's useful,

Matthew

On 3/09/2015 5:30 PM, nizets2-at-yahoo.com wrote:
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} Dear Listers!
}
} we noticed changes of temperature in the TEM room so I installed a thermometer.
} The temperature fluctuates by approx. 3°C (21.4-24.1°C) in the day or overnight.
} We have a Tecnai G20 and a powerful air conditioning system.
} I know that temperature should be as constant as possible but I don't know how much it is important.
} What inconvenients should I expect with such a temperature fluctuation? What are the specifications of this instrument?
}
} Best regards,
} Stephane

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From: frank_karl-at-ardl.com
Date: Fri, 4 Sep 2015 09:11:09 -0500
Subject: [Microscopy] Who knows what lurks .....

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Hello Everyone,
My management is interested in the inspection/optical systems offered by Nanotronics. Hopefully, we will be seeing their systems presently.

Does anyone have any experience with these systems?

Thanks!!!!

Frank Karl

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From: microscopy.listserver-at-gmail.com
Date: Fri, 4 Sep 2015 18:19:32 -0500
Subject: [Microscopy] viaWWW:

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Email: ramchandra.t-at-gmail.com
Name: Ramchandra Tiruvalam

Organization: Haldor Topsoe A/S

Title-Subject: [Filtered] Looking for optical adsorption and surface plasmons in the EDS

Message: I did not know EDS spectra showed optical absorption peaks...:-)

"The EDX spectrum, shown in Figure 8, reveals the clear elemental composition profile of the green
synthesized Ag NPs. The intense signal at 3 keV strongly suggests that Ag was the major element,
which has an optical absorption in this range due to the SPR [Reference: Mallikarjuna K, et al
Phytochemical fabrication and characterization of silver nanoparticles by using pepper leaf broth.
Arabian Journal of Chemistry. 2013] Notably, the other signals in the range of 0.0–0.5 keV – one of
which is very intense – represent the typical absorption of carbon and oxygen and thus indicates the
presence of the plant extract (as a capping ligand) on the surfaces of the NPs."
Khan M, et al. Green synthesis of silver nanoparticles mediated by Pulicaria glutinosa extract.
International Journal of Nanomedicine. 2013;8:1507-1516.

"The appearance of an optical absorption peak at 2.80 keV in energy dispersive spectra further
confirmed the presence of Pd-NPs"
Dauthal P et al., Biosynthesis of palladium nanoparticles using delonix regia leaf extract and its
catalytic activity for nitro-aromatics hydrogenation Ind. Eng. Chem. Res. 2013, 52, 18131– 18139

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From: wesaia-at-iastate.edu
Date: Fri, 4 Sep 2015 19:28:59 -0500
Subject: [Microscopy] viaWWW:

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Ram

A series of peaks in the 2.5 - 3.5 keV range would most probably
be Ag and Pd L shell x-rays. They are certainly not optical transitions.

Optical absorption peaks and plasmons are generally { 20 eV
(with visible emission wavelengths { 4 eV). You will need high resolution EELS, or
true optical spectroscopy to measure those.

The author's statements are attributing this to optical absorption
are simply wrong and clearly the Journal's reviewer also did not
understand the spectroscopy being employed.

Cheers,

Nestor





On Sep 4, 2015, at 6:19 PM CDT, {microscopy.listserver-at-gmail.com} {microscopy.listserver-at-gmail.com} wrote:

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}
} Title-Subject: [Filtered] Looking for optical adsorption and surface plasmons in the EDS
}
} Message: I did not know EDS spectra showed optical absorption peaks...:-)
}
} "The EDX spectrum, shown in Figure 8, reveals the clear elemental composition profile of the green
} synthesized Ag NPs. The intense signal at 3 keV strongly suggests that Ag was the major element,
} which has an optical absorption in this range due to the SPR [Reference: Mallikarjuna K, et al
} Phytochemical fabrication and characterization of silver nanoparticles by using pepper leaf broth.
} Arabian Journal of Chemistry. 2013] Notably, the other signals in the range of 0.0–0.5 keV – one of
} which is very intense – represent the typical absorption of carbon and oxygen and thus indicates the
} presence of the plant extract (as a capping ligand) on the surfaces of the NPs."
} Khan M, et al. Green synthesis of silver nanoparticles mediated by Pulicaria glutinosa extract.
} International Journal of Nanomedicine. 2013;8:1507-1516.
}
} "The appearance of an optical absorption peak at 2.80 keV in energy dispersive spectra further
} confirmed the presence of Pd-NPs"
} Dauthal P et al., Biosynthesis of palladium nanoparticles using delonix regia leaf extract and its
} catalytic activity for nitro-aromatics hydrogenation Ind. Eng. Chem. Res. 2013, 52, 18131– 18139
}
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Dr. Nestor J. Zaluzec
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The box said ...
"This program requires Win 95/98/NT or better..."
So I bought a Mac !

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From ferguson651651615foxyx-at-gmail.com Fri Sep 4 19:05:43 2015
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Say it ain't so!
Those are not the optical absorptions due to SPR but the characteristic x-ray emissions.
My carbon peaks show up around 0.27 keV, not zero.
The fact that C and O are present does not mean that they are capping ligands, even if you would like them to be. It just means that they are around.

Someone really needs to get some better reviewers and editors. It's about bad enough to make me give up on lots of journals.

Warren Straszheim

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Email: ramchandra.t-at-gmail.com
Name: Ramchandra Tiruvalam

Organization: Haldor Topsoe A/S

Title-Subject: [Filtered] Looking for optical adsorption and surface plasmons in the EDS

Message: I did not know EDS spectra showed optical absorption peaks...:-)

"The EDX spectrum, shown in Figure 8, reveals the clear elemental composition profile of the green synthesized Ag NPs. The intense signal at 3 keV strongly suggests that Ag was the major element, which has an optical absorption in this range due to the SPR [Reference: Mallikarjuna K, et al Phytochemical fabrication and characterization of silver nanoparticles by using pepper leaf broth.
Arabian Journal of Chemistry. 2013] Notably, the other signals in the range of 0.0–0.5 keV – one of which is very intense represent the typical absorption of carbon and oxygen and thus indicates the presence of the plant extract (as a capping ligand) on the surfaces of the NPs."
Khan M, et al. Green synthesis of silver nanoparticles mediated by Pulicaria glutinosa extract.
International Journal of Nanomedicine. 2013;8:1507-1516.

"The appearance of an optical absorption peak at 2.80 keV in energy dispersive spectra further confirmed the presence of Pd-NPs"
Dauthal P et al., Biosynthesis of palladium nanoparticles using delonix regia leaf extract and its catalytic activity for nitro-aromatics hydrogenation Ind. Eng. Chem. Res. 2013, 52, 18131– 18139

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From: rosey.vandriel-at-deakin.edu.au
Date: Sun, 6 Sep 2015 23:38:12 -0500
Subject: [Microscopy] Buffer choice for TEM of skeletal muscle - Summary

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thank you to all who responded to my query. This listserver is such a great resource!

First let me give you a little background.
I switched from phosphate buffer to HEPES buffered saline back in the '90s, and had previously used phosphate buffer extensively (and cacodylate to a lesser extent). For morphology and for immunolabelling, HEPES buffered saline has been my buffer of choice for use with primary fixatives. I loved the way the cytoplasm retained density, and the morphology of tissue more closely resembled what could be achieved with cryofixation.
Cacodylate seemed to result in washed out cytoplasm. (Almost all replies agreed with this.)

During my time working with tissues infected with viruses, about 10 years ago, I did another comparison between phosphate buffer, cacodylate buffer and HEPES buffered saline. For some tissues, use of cacodylate was beneficial as the washed out cytoplasm made the viral particles easier to find. In those cases we were not interested in the tissue, only the presence of viral particles for diagnostic purposes. (For morphology, HEPES was the outright winner.)

So I wondered if cacodylate persisted in the literature for skeletal muscle for a similar reason.

A few replies have been from researchers who have worked extensively with TEM of mammalian skeletal muscle, and use of phosphate buffer is common and successful.
However, it seems cacodylate can give a more desirable morphology for this tissue type when compared with other buffers.
Terry Robertson, who has extensive experience with TEM of skeletal muscle, has done buffer comparisons with this tissue. He says the results are far superior with cacodylate buffer for skeletal muscle. He writes that this advantage far outweighs the problems of working with it, and is probably because the high atomic number of the buffer means that it offers some contrast to organelles and membranes. Terry was also kind enough to provide a protocol and a reading list. Thanks Terry!
Thanks again to all those who replied. There were many other good hints about processing skeletal muscle and other specimens. I always find it interesting to see the things others find advantageous in their work.

There are so many ways to prepare samples, and in the absence of cryofixation, each tissue requires some tweaking of the protocol for optimal results. Of course "optimal" depends entirely on what it is in the tissue you wish to visualize.

Due to the difficulties of ordering, storing, handling and controlling cacodylate, we might use HEPES in the pilot study. However, I have been convinced it may be worth the researcher's time and effort to work with cacodylate buffered fixative.

I do agree with Stephane Nizet that TEM imaging of skeletal muscle is one of the most enjoyable things! So pretty!

Best regards,
Rosey




Rosey van Driel
Manager, Transmission Electron Microscopy (TEM)
Institute for Frontier Materials, GTP Research


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From: amenex-at-amenex.com
Date: Tue, 8 Sep 2015 08:31:36 -0500
Subject: [Microscopy] Metallurgical journals available in southeast pennsylvania

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,

Seeking advise to water condensate inside the console (column and electronic electronics); it so happened that there seemed to have been a brief power interruption during my 10 day vacation and there was no alternative person to watch and report this incident.

When I returned and entered the lab, I found water all around the flooring and console. Power supply was on, the water chiller was operating and scope was inactive, and the PC had rebooted.

On seeking advise from the support center, I was asked to shut the chiller and cut the power to the machine. The approach seems to be to dry out all the system for 2 or three days and then attempt the diagnose the resulting damage.

What to expect. Please share your experience, If any of you have gone through a similar situation.

Thanks

Mohammed Yousuf PhD
Central Laboratories
Microscopy and micro-analysis facility
Qatar University
Doha, Qatar.


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8, 46 -- From mdyousuf-at-qu.edu.qa Mon Sep 7 01:05:53 2015
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8, 46 -- From: Mohammed Yousuf {mdyousuf-at-qu.edu.qa}
8, 46 -- To: "microscopy-at-microscopy.com" {microscopy-at-microscopy.com}
8, 46 -- Subject: TEM - Tecnai TF20 - Water condensation problem
8, 46 -- Thread-Topic: TEM - Tecnai TF20 - Water condensation problem
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From advertise.bz222ztuza-at-gmail.com Mon Sep 7 05:54:38 2015
Return-Path: {advertise.bz222ztuza-at-gmail.com}
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for {microscopylistserverarchive5-at-microscopy.com} ; Mon, 7 Sep 2015 05:54:37 -0500
Message-ID: {D5014DDC.73763BF3-at-gmail.com}

Hi

I do not know if this will help but this is my experience?

Twice in my career I have had water pour all over an instrument, one from a
bust tap creating a fountain in the microscope room, the other from a fire
on upper floors, and the extinguisher water ending up on the microscope. I
found that with clean water going all over the microscope, after a week of
drying out, we had NO problems. With the fire water damage, waiting the
same amount of time one circuit board suffered, this was due to the
contamination of the board by media from the building itself being brought
down onto the board surface. No matter how much cleaning I tried I could
not persuade the board to run. It had to be replaced.

So clean water should not be a problem, dirty water probably is!

Steve

Steve Chapman FRMS
Protrain for Consultancy and Training in Electron Microscopy
+44 (0)7711 606967
web www.emcourses.com



-----Original Message-----
X-from: mdyousuf-at-qu.edu.qa [mailto:mdyousuf-at-qu.edu.qa]
Sent: 07 September 2015 07:09
To: protrain-at-emcourses.com

Hello Fellow Microscopists -

The marketplace has decided that I should retire, so a fifty year
accumulation of scientific journals is available to anyone with more
space than I have:

http://www.georgesbasement.com/galootsales/Sale07262015/MetallurgicalJournals.htm

Yes, I'm that guy, too: George Langford of georgesbasement.com.

The following titles are available:

Metallurgical Transactions in Series A and B, 1972 to 2002 with a few gaps.
Acta Metallurgica from its inception (1953) through 1999, including
its transmogrification to Acta Materialia, with only a few missing
issues.
Metallography from its inception (1968) to 1988 with some gaps.
Transactions A.I.M.E. (metals section) from 1950 to 1969, mostly
bound, but with some gaps.
American Society for Metals Review of Metal Literature, 1964 through 1967.
Progress in Metal Physics from 1949 to 1959, missing Vol's 5 & 6.
A.S.T.M. yearly collections, many ... mostly metals related.

This is about a ton (1000 kg) of books & magazines.

I'm trying to place these in good homes. If you just want one issue
from a year, it's $5 for the handling; larger quantities are free for
the asking, but you must pick up with a sturdy vehicle or pay for
FedEx delivery to the U.S.A. only; I'll supply the packing materials
if shipment is necessary. I need space !


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From: nizets2-at-yahoo.com
Date: Wed, 9 Sep 2015 04:41:32 -0500
Subject: [Microscopy] uranyl acetate stability, eliminating precipitates

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear listers,

I took quite some time to summarize the many answers I got concerning T° fluctuations in the TEM room.
Unfortunately just before posting I unconsciously hit some cryptic shortcut key combination which loaded the previous web page, deleting my message at the same time. Thanks microsoft for making my life a little bit harder!
I won't write it again but still I am grateful for the many answers, all useful.

Now to my next problem:
I have discovered 1L (!!!) of uranyle acetate solution in a fridge, packed in alu foil. It is probably there for several years now (I guess around 10 years).
I don't know who was crazy enough to do that but my heart bleeds at the thought of having to call a specialized company to dispose of the solution.
Is there a way I can use it? Is there a hope than it still can be used (other than forcing the person who prepared it to drink it all at once)?
Filtering the solution through a 0.22ľm filter will probably not be enough.
Maybe I can centrifuge it? How fast and how long would I need to centrifuge to get rid of the finest precipitates? I don't have an ultracentrifuge!
Should I just forget it, beg mother earth's pardon for the "inconvenience" and just make a new solution?
Just write a new message to the List: uranyle acetate ready solution to give away. You pay the transport and the insurance ? :-)))))

Regards,
Stephane









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From: Z.Zhou-at-lboro.ac.uk
Date: Wed, 9 Sep 2015 11:38:38 -0500
Subject: [Microscopy] EDX in SEM and TEM origin of X-rays 0-100eV energy

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Fellow SEM and TEM microscopists,
A typical energy dispersive X-ray spectrum recorded using a TEM or SEM has peaks corresponding to characteristic X-ray energies, superimposed on a Bremsstrahlung background. I notice there is a zero peak followed by some background with reasonable intensity and it appears differently by different detector manufacture in terms of intensity. I understand that ionisation process results in the characteristic X-ray peaks. But, what process or electron/matter interactions could be involved to give the X-rays at low energy up to 100eV? My detector registered X-ray counts there, it must have come from somewhere.
I would be extremely grateful if you could give me some hints, or suggest some book chapters to read, or some papers to refer to.

Kind regards,
Zhaoxia Zhou
Dr Z Zhou
Experimental Officer
Loughborough Materials Characterisation Centre (LMCC)
Department of Materials
Loughborough University
Leicestershire
LE11 3TU


==============================Original Headers==============================
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3, 56 -- From: Zhaoxia Zhou {Z.Zhou-at-lboro.ac.uk}
3, 56 -- To: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
3, 56 -- Subject: EDX in SEM and TEM origin of X-rays 0-100eV energy
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From: microscopy.listserver-at-gmail.com
Date: Thu, 10 Sep 2015 07:21:05 -0500
Subject: [Microscopy] viaWWW:6th TEM Summer School in Brazil

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

The fact that this zero peak appears different from detector to detector is your clue to the origin, a peak or peaks in this region is almost certainly an instrumental effect, and NOT x-rays. The various components in the detector and processing electronics generate some electronic noise which is digitized along with the true x-rays generated from the sample. Most pulse processors have a set of discriminators that are set on installation to minimize the amount of these effect, but cannot eliminate them entirely. This is true even if you have a recent "digital" pulse Processor--there will still be some software settings that act to reduce the zero noise peak.

Every manufacturer does this a bit differently hence the difference you see. If you can modify the discriminator setting on your unit try tweaking then a bit and you will see some interesting stuff. Proper discriminator settings are critical to getting good light element x-ray detection with proper peak shapes and peak positions.

Regards
Jon

Jon J McCarthy, Ph. D.
Senior Scientist- Emeritus and Researcher
Wisconsin Materials Institute
College of Engineering
University of Wisconsin-Madison
Room 246, Materials Science and Engineering Bldg.
608-890-3134 Office
608-345-6134 Cell
jjmccarthy-at-wisc.edu



-----Original Message-----
X-from: Z.Zhou-at-lboro.ac.uk [mailto:Z.Zhou-at-lboro.ac.uk]
Sent: Wednesday, September 9, 2015 12:01 PM
To: Jon Mccarthy {jjmccarthy-at-wisc.edu}

Dear Fellow SEM and TEM microscopists,
A typical energy dispersive X-ray spectrum recorded using a TEM or SEM has peaks corresponding to characteristic X-ray energies, superimposed on a Bremsstrahlung background. I notice there is a zero peak followed by some background with reasonable intensity and it appears differently by different detector manufacture in terms of intensity. I understand that ionisation process results in the characteristic X-ray peaks. But, what process or electron/matter interactions could be involved to give the X-rays at low energy up to 100eV? My detector registered X-ray counts there, it must have come from somewhere.
I would be extremely grateful if you could give me some hints, or suggest some book chapters to read, or some papers to refer to.

Kind regards,
Zhaoxia Zhou
Dr Z Zhou
Experimental Officer
Loughborough Materials Characterisation Centre (LMCC) Department of Materials Loughborough University Leicestershire
LE11 3TU


==============================Original Headers==============================
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15, 67 -- Subject: RE: [Microscopy] EDX in SEM and TEM origin of X-rays 0-100eV energy
15, 67 -- Thread-topic: [Microscopy] EDX in SEM and TEM origin of X-rays 0-100eV energy
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From mike.sfsd4f564s6df45dshyioa-at-gmail.com Wed Sep 9 14:30:23 2015
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Email: jefbettini-at-gmail.com
Name: Jefferson Bettini

Organization: CNPEM/LNNano

Title-Subject: [Filtered] 6th TEM Summer School in Brazil

Message: LNNano receives applications for the 6th TEM Summer School

Candidates may apply until August 31st. 100 participants are expected to attend the school.

Conducted every two years the already established Transmission Electron Microscopy (TEM) Summer
School will receive applications for its sixth edition until August 31st. The event will be held at
the Brazilian Nanotechnology National Laboratory (LNNano), located in the Brazilian Center for
Research in Energy and Materials (CNPEM) campus, Campinas - Brazil, between January 11 and 29, 2016.

This school aims to contribute to the advanced training of graduate students and researchers in the
fields of engineering, materials science, physics, chemistry and related fields from academic and
industrial communities, in Brazil and abroad, on theoretical and practical concepts of TEM
techniques for materials characterization. It is a three week course where the first two weeks are
dedicated to basic and advanced theoretical classes and the third one will be focused on practical
classes using the Electron Microscopy facilities available at LNNano.

The courses will be taught by leading researchers in the field of electron microscopy associated to
important research and educational institutions of Brazil and oversees. See all speakers for the 6th
edition.

Official invitation from the Organizing Committee

Every candidate must fill out the application form, attaching an updated CV, Graduate transcripts, a
summary of research project justifying the use of TEM techniques, an essay justifying why is
important for you to attend the school, an abstract of partial or complete analysis of your own
scientific research (using TEM) to present as poster, and a recommendation letter. Check How to
participate.

The 6th TEM Summer School is organized by the Electron Microscopy Laboratory (LME/LNNano) with the
FAPESP support. For further information please visit: http://pages.cnpem.br/temsummerschool/


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From: microscopy.listserver-at-gmail.com
Date: Thu, 10 Sep 2015 07:21:48 -0500
Subject: [Microscopy] viaWWW:Mettler Toledo FP80 Temperature Controller

Contents Retrieved from Microscopy Listserver Archives
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Email: slkodjie-at-dow.com
Name: Stephen Kodjie

Organization: Dow Chemical

Title-Subject: [Filtered] Mettler Toledo FP80 Temperature Controller

Message: I have a Mettler Toledo FP80 temperature controller but would need a manual in order to
operate it. The Mettler Toledo website indicate that this product has been phased out since 1992.
Does anyone have copy of the manual they can share? Either electronic format or hardcopy would be
much appreciated.


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From: microscopy.listserver-at-gmail.com
Date: Fri, 11 Sep 2015 18:00:15 -0500
Subject: [Microscopy] viaWWW:30KV fails atuomatically in FEI Nova NanoSEM450

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

University of Connecticut, Institute of Materials Science
Position in X-Ray Diffraction


The Institute of Materials Science (IMS) at UConn is an interdisciplinary
center with the threefold mission of fostering education, research and
outreach in all areas of the materials sciences. The X-ray Laboratory is a
user facility which houses the main X-ray research instruments for the IMS
including: single crystal diffraction, powder diffraction, scattering, and
imaging. (see:
http://www.ims.uconn.edu/research-facilities/x-ray-diffraction/).

There is an opening in the Laboratory for an X-ray specialist. The
appointee will be involved in a range of academic and industrial projects,
and will assist in the operation of the Laboratory including: offering
short courses, performing routine maintenance, and training/assisting
users of the instruments. Candidates should hold a higher degree (MS or
Ph.D.) in Materials Science or a related discipline and must have
extensive hands-on experience in X-ray diffraction / scattering/ imaging.
Experience in maintenance of instrumentation would also be beneficial.
This is a fixed-term appointment (one year in the first instance) and is
available from October 1st. Screening of the applications will begin
immediately and will continue until the post is filled. Applications from
under-represented groups, including minorities, women, and persons with
disabilities are encouraged.

Interested candidates should send a curriculum vitae and the names of at
least three referees with postal addresses, telephone numbers and Email
addresses to: Prof. Steve Suib, Director,
Institute of Materials Science, University of Connecticut, 97 North
Eagleville Road, Unit 3136, Storrs, CT 06269-3136 USA. Email:
steven.suib-at-uconn.edu



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From ohn.bullocknewshiojj-at-gmail.com Thu Sep 10 19:50:59 2015
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Email: 13qw9-at-queensu.ca
Name: Jason

Title-Subject: [Filtered] 30KV fails atuomatically in FEI Nova NanoSEM450

Message: hello everybody, could anyone give some suggestions to our current problem? We are using a
FEI Nova NanoSEM450. Whenever we use the 30KV, it only last for around 5 hours before fails. And if
we turn on the beam again using 30KV, it will turn off instantly again. But it allows us to use the
next day, and of course still only 5 hours. The 20KV and lower work fine. The technician checked
everything but didn't find any problem...

Thank you in advance for your help!

Jason

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From: drhull-at-zoominternet.net
Date: Fri, 11 Sep 2015 23:44:50 -0500
Subject: [Microscopy] Re: viaWWW:30KV fails atuomatically in FEI Nova

Contents Retrieved from Microscopy Listserver Archives
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We had a similar problem with a Philips CM200 that would arc at 200 kV
after several hours. Still had the problem after replacing the entire
emission chamber. It turned out to be a DC power supply that regulated
the high voltage. A 15 volt DC supply would start losing voltage
causing the high voltage tank to increase to 220 kV plus then arc. It
took a rookie service engineer, Ken Hurst, to setup a laptop to read all
of the DC power supplies to find the one causing the problem.

microscopy.listserver-at-gmail.com wrote:
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}
} Email: 13qw9-at-queensu.ca
} Name: Jason
}
} Title-Subject: [Filtered] 30KV fails atuomatically in FEI Nova NanoSEM450
}
} Message: hello everybody, could anyone give some suggestions to our current problem? We are using a
} FEI Nova NanoSEM450. Whenever we use the 30KV, it only last for around 5 hours before fails. And if
} we turn on the beam again using 30KV, it will turn off instantly again. But it allows us to use the
} next day, and of course still only 5 hours. The 20KV and lower work fine. The technician checked
} everything but didn't find any problem...
}
} Thank you in advance for your help!
}
} Jason
}
} Login Host: 130.15.32.234
} Listserver Email Form V - 20120416
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From: tbargar-at-unmc.edu
Date: Mon, 14 Sep 2015 09:52:37 -0500
Subject: [Microscopy] Quantification of autophagosomes using TEM

Contents Retrieved from Microscopy Listserver Archives
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Dear Listers,

I'm getting an increase in researchers coming to me wanting to see autophagosomes (the last few years it seems that autophagy is becoming quite a popular topic). Getting images of autophagosomes is not a problem. The problem I am having with researchers, is getting them to understand that you cannot quantify the presence of the autophagosomes by simply counting the ones you see in a few sections. When I try to explain about stereology methods we could use to quantify the autophagosomes I lose them, in addition I keep getting presented with papers they have read in which the quantitative methods being used are clearly wrong. I would like to hear from others who are dealing with similar requests and how are you handling these requests. In particular anyone who is involved in quantifying autophagosomes by using TEM. As always thanks in advance, all help is appreciated.

Tom Bargar
UNMC
Electron Microscopy Core Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu


The information in this e-mail may be privileged and confidential, intended only for the use of the addressee(s) above. Any unauthorized use or disclosure of this information is prohibited. If you have received this e-mail by mistake, please delete it and immediately contact the sender.



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From: jkrupp-at-deltacollege.edu
Date: Tue, 15 Sep 2015 13:11:53 -0500
Subject: [Microscopy] Jet thin Al?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Anyone have advice about jet thinning aluminum alloys?

Thinking of trying it, but need ideas. Anyone doing it or know someone who is?

Thanks

Jon

Jonathan Krupp
Applied Science, Business & Technology
San Joaquin Delta College
5151 Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu

Find us on Facebook -at-
Electron Microscopy at SJ Delta College










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From: oshel1pe-at-cmich.edu
Date: Tue, 15 Sep 2015 13:55:51 -0500
Subject: [Microscopy] Re: Ask a Microscopist

Contents Retrieved from Microscopy Listserver Archives
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***************************************************************************************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
not a member the listserver, and
**any reply should go directly to the poster**
as well as to the list.
Using the "reply" function in your email does *not* send your answer
to the person asking the question.
Please copy their email address from their question.
****************************************************************************************


} Ask a Microscopist
}
}
} The following Ask a Microscopist form submission was received from your website.
}
}
} Name: Connie Cummings
}
} School: MSA Member
}
} Grade/Education Level: Graduate
}
} Location: Durham, NC US
}
} Email: ultrapathimaging-at-gmail.com
}
} Subject: Sampling
}
} Your Question: An ongoing hair-pulling dispute between me, the microscopist, and almost every person doing research: Why did you take so many photomicrographs for each sample? Wouldn't say two or three photographs be just as good as the 5 to 10 you took. I, the investigation, still can't get over you embedding 6 blocks and sectioning all those blocks as semi-things!
} HOW DO YOU HANDLE THIS SCENARIO? HOW DO YOU DEMONSTRATE THAT MORE IN EM IS ACTUALLY BETTER!
}



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From: tina-at-pbrc.hawaii.edu
Date: Tue, 15 Sep 2015 14:28:48 -0500
Subject: [Microscopy] Re: Sampling, Ask a Microscopist

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi, Connie-

} } Your Question: An ongoing hair-pulling dispute between me, the
} } microscopist, and almost every person doing research: Why did you take
} } so many photomicrographs for each sample? Wouldn't say two or three
} } photographs be just as good as the 5 to 10 you took. I, the
} } investigation, still can't get over you embedding 6 blocks and
} } sectioning all those blocks as semi-things! HOW DO YOU HANDLE THIS
} } SCENARIO? HOW DO YOU DEMONSTRATE THAT MORE IN EM IS ACTUALLY BETTER!

Hahahaa. Yeah. Well, I draw them pictures (I always draw pictures, as if
for a child) of their sample size. For TEM, I draw a cell. Then I draw the
nucleus and maybe a few other organelles. Then I draw the object of
interest, particularly if they are looking for a virus. Then I draw a line
through the cell, representing a 60-80 nm section, which clearly misses
any of the object of interest. Then I draw a bunch more parallel lines,
representing lots more sections, still missing the object of interest. If
it's a cell pellet, I draw more cells, but show that, unless there are a
lot of cells and they are ALL showing the object of interest, my paltry
1mm x 2mm x 60nm section is going to miss it. If it's a tissue, same
problem, probably worse. Explain sample size.

For semi-thins, same problem but at a slightly different scale. I just
serial-sectioned a small marine organism for somebody who had a
pre-conceived notion of how something worked based on a couple of random
sections taken from a paraffin block ages ago. And gave a talk about it.
The serial resin sections clearly showed something else was
going on altogether, and then the intermittant ultrathins blew it all out
of the water. (I love my job, teehee.)

This is why I really encourage investigators to come and do their own
microscopy, so they have a better idea of the context. If they don't, I
take a zillion micrographs and send them all. I hate just giving
them a few select micrographs that may or may not reflect my bias (me,
biased?).

We can rant together!

Aloha,
Tina

****************************************************************************
* Tina (Weatherby) Carvalho * tina-at-pbrc.hawaii.edu *
* Biological Electron Microscope Facility * (808) 956-6251 *
* University of Hawaii at Manoa * http://www.pbrc.hawaii.edu/bemf*
****************************************************************************

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From: John.Mardinly-at-asu.edu
Date: Tue, 15 Sep 2015 14:50:39 -0500
Subject: [Microscopy] Re: Ask a Microscopist

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


If you are digital, the memory for the images is PRACTICALLY FREE! Any professional photographer these days just shoots gazzilions of pictures. Been to a wedding lately? The photog just sits there, clicking away. My last vacation, I took 1,354 photos in 2 weeks. After I got home, I realized it was not enough. Experiments are expensive. Specimen prep is expensive. Once you have the object to photograph, take as many photos as you can!

John Mardinly, ASU

-----Original Message-----
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Sent: Tuesday, September 15, 2015 12:06 PM
To: John Mardinly

***************************************************************************************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely not a member the listserver, and **any reply should go directly to the poster** as well as to the list.
Using the "reply" function in your email does *not* send your answer to the person asking the question.
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} Ask a Microscopist
}
}
} The following Ask a Microscopist form submission was received from your website.
}
}
} Name: Connie Cummings
}
} School: MSA Member
}
} Grade/Education Level: Graduate
}
} Location: Durham, NC US
}
} Email: ultrapathimaging-at-gmail.com
}
} Subject: Sampling
}
} Your Question: An ongoing hair-pulling dispute between me, the microscopist, and almost every person doing research: Why did you take so many photomicrographs for each sample? Wouldn't say two or three photographs be just as good as the 5 to 10 you took. I, the investigation, still can't get over you embedding 6 blocks and sectioning all those blocks as semi-things!
} HOW DO YOU HANDLE THIS SCENARIO? HOW DO YOU DEMONSTRATE THAT MORE IN EM IS ACTUALLY BETTER!
}



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From: oshel1pe-at-cmich.edu
Date: Tue, 15 Sep 2015 15:48:33 -0500
Subject: [Microscopy] Re: Ask a Microscopist

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Connie,

One word: statistics.
If that doesn't work, ask them what a sample is. The cell within which
the Thing is hidden? So how many cells need to be sampled? From how many
different tissues/organisms because the cells vary among tissues and
organisms. The Thing, because they need to know the Thing's
ultrastructure, which may vary by the local micro-environment? How many
Things from how many different micro-environments need to be sampled?
Perhaps it's the tissue, so how many bits of tissue need to be sampled?
How many sections have to be cut in order to actually have a reasonable
chance of cutting
whateverthebloodyhairpullinghellitisthatthebloodyhairpullingInvestigator
is looking for? In enough numbers to actually believe the images you get
have something to do with reality?

Or because once you get cutting you can't stop the ultratome just keeps
cutting ahhhhpleasenosomebodyturnitoff!! and geez, there are all these
sections, I suppose I have to Look At Them.

What, me, loosing it? Just because classes are on and profs want demos
and images of The Things The Class Just Made and we're teaching TEM and
reseachers are walking in doing Microscopy! and it's just the beginning
of the semester and the chillers acting up and I need parts for the
sputter coater and ... I'll go hide under a table now.

Phil

On 09/15/2015 13:39 , AssociationManagement-at-microscopy.org wrote:
}
} Ask a Microscopist
}
}
} The following Ask a Microscopist form submission was received from your website.
}
}
} Name: Connie Cummings
}
} School: MSA Member
}
} Grade/Education Level: Graduate
}
} Location: Durham, NC US
}
} Email: ultrapathimaging-at-gmail.com
}
} Subject: Sampling
}
} Your Question: An ongoing hair-pulling dispute between me, the microscopist, and almost every person doing research: Why did you take so many photomicrographs for each sample? Wouldn't say two or three photographs be just as good as the 5 to 10 you took. I, the investigation, still can't get over you embedding 6 blocks and sectioning all those blocks as semi-things!
} HOW DO YOU HANDLE THIS SCENARIO? HOW DO YOU DEMONSTRATE THAT MORE IN EM IS ACTUALLY BETTER!
}

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: amenex-at-amenex.com
Date: Tue, 15 Sep 2015 16:27:43 -0500
Subject: [Microscopy] Update on the metallurgical journals giveaway ... and another

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello microscopists -

Most of the journals have been spoken for, with the exception of
Metallurgical Transactions, for which there have been no inquiries,
and the ASTM volumes as indicated here:
http://www.georgesbasement.com/galootsales/Sale07262015/MetallurgicalJournals.htm

However, during the cleanout of Amenex's storage facility, the
following item has become accessible:
a Joyce Loebl double-beam microdensitometer, which we obtained in
working condition at a cash & carry sale, but for which we never found
a use. It is functional and has been kept under cover for the last
fifteen years, but the glass platen has gotten broken. I kept the
pieces to facilitate measurements for a replacement. We cannot ship
it, so the willing recipient will have to find transport. Time is
short, as the storage unit is close to getting its final cleanout. The
microdensitometer can just about be picked up and carried a few feet
by one person (which I've done ... while breaking that glass plate
with an errant squeeze) and it will fit in the trunk of an automobile.
Packing is problematic for want of space in which to construct & store
a crate. If you don't take it, it's going to the recycling center when
our trash haulers do that final cleanout. Price: Totally free. It's
located at Public Storage on Route 3 in West Chester, Pennsylvania,
about equidistant between Philadelphia and Wilmington, Delaware.



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From: vray-at-partbeamsystech.com
Date: Tue, 15 Sep 2015 18:44:15 -0500
Subject: [Microscopy] Converting diffusion pumps to Fomblin

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi there



Your conversation is so refreshing! Connie loves her preparations and shoots
many photos, Tina points at the diverse aspects of each sample and John
mentions how easier is to get photos in our digital era.



So where is the problem if flooded with photos? Are they not all of them
unique snapshots of each sample? Why is a researcher bothered by them?



Well, the answer is simple but sometimes difficult to say. To appreciate
morphology needs affection, brain and time. That makes it less attractive to
people inclined to approaches that are easier to interpret, such as
immunological and molecular ones.



In Biology, Morphology studies will remain the most straightforward approach
to this hidden universe called microcosm. Morphology is a Queen that will
always award her devotees! (I just finished a long series of SEM shoots, it
is above midnight here and I felt I have to defend my Queen...)



Greetings from Greece



yorgos





Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
************************************









----- Original Message -----
X-from: {tina-at-pbrc.hawaii.edu}
To: {eikonika-at-otenet.gr}
Sent: Tuesday, September 15, 2015 10:34 PM

Dear Listers,

Realizing that the request may be considered a bit naiive, but could
someone please share, or point me to good resource on choosing fluids
for diffusion pumps? Maybe even cross-reference table for Fomblin and
hydrocarbon oils?

I am trying to return old Electroscan SEM back to life and considering
charging Fomblin instead of mineral oil into its Varian M-2 dirrusion
pumps...

Thanks beforehand,
--
Valery Ray - also with AIM Lab, UMDCP
=======================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844, USA
Phone: +1-978-296-5063
E-Mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com
UMD E-Mail: vray-at-umd.edu

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From: Rosemary.White-at-csiro.au
Date: Tue, 15 Sep 2015 19:35:46 -0500
Subject: [Microscopy] Re: FW: Re: Ask a Microscopist

Contents Retrieved from Microscopy Listserver Archives
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Absolutely!

Time is expensive! - the time taken to treat the plants or animals, take
samples, process them, etc. Imaging is cheap, and you don't want to have
to go back and redo imaging because you didn't have enough samples to
begin with. And sectioning doesn't take that long for an experienced
person. Nor is it much more effort to run multiple samples.

As an aside, in plant biology, it sometimes takes a year to get
transgenics, yet people are often still unwilling to spend more than about
a minute taking the key image showing the phenotype/gene expression. Grrr.

Another question is how many replicates are needed in experiments - for
statistical differences to be detected? Also, how do you know what are the
representative morphologies without multiple samples? Is any quantifiction
needed? It often is, these days, you can't get away with saying "this is a
representative image" so much any more. And if you don't look closely at
your tissues and cells, you might miss something subtle.

Sigh.

cheers,
Rosemary

Rosemary White
CSIRO Agriculture
GPO Box 1600
Canberra, ACT 2601

T 02 6246 5475
E rosemary.white-at-csiro.au


On 16/09/15 5:56 AM, "John.Mardinly-at-asu.edu" {John.Mardinly-at-asu.edu} wrote:

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From: microscopy.listserver-at-gmail.com
Date: Tue, 15 Sep 2015 20:54:38 -0500
Subject: [Microscopy] viaWWW:Gresham EDS motor controller

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Email: rrw3q-at-virginia.edu
Name: Richard White

Organization: University of virginia

Title-Subject: [Filtered] EDS Controller

Message: We had our TEM Gresham EDS motor controller for our high angle Si/Li detector die on us and
I was wondering if anyone has upgraded their system and has one lying around. It is a Gresham model
900-0820 - small white box that just toggles the motor to send the detector In/Out.

Thanks,

Richard

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From: zaluzec-at-aaem.amc.anl.gov
Date: Tue, 15 Sep 2015 21:04:29 -0500
Subject: [Microscopy] Technical Reference for Electropolishing for TEM : Jet thin Al?

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Jon

I recommend that you look up the following report published by Bernie Kestel of Argonne National Lab.
the 1994 Microscopy Society of America Outstanding Technologist Award winner.

ANL-80-120/Rev.1
Polishing Methods for Metallic and Ceramic Transmission Electron Microscopy Specimens
by B.J. Kestel (1986)
DE89016686
NTIS Issue Number 199005

A reference that should be in every microscopist's library of specimen preparation techniques.
It is downloadable (Free) from the National Technical Information Service.

https://ntrl.ntis.gov/NTRL/dashboard/searchResults.xhtml?searchQuery=ANL-80-120

It documents 30+ years of electropolishing techniques for TEM specimen prep that
Bernie developed before he retired and gives detailed electropolishing solutions and conditions.

Cheers,

Nestor
Your Friendly Neighborhood SysOp

PS. The receipe for Aluminum by jet polishing is 20% HClO4 / 80% Ethanol, - 60 C, 90V/10-12 nA





On Tue, Sep 15, 2015 at 1:11 PM, {jkrupp-at-deltacollege.edu} wrote:



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Anyone have advice about jet thinning aluminum alloys?

Thinking of trying it, but need ideas. Anyone doing it or know someone who is?

Thanks

Jon

Jonathan Krupp
Applied Science, Business & Technology
San Joaquin Delta College
5151 Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu

Find us on Facebook -at-
Electron Microscopy at SJ Delta College




---===[|]===---

===========================================
Dr. Nestor J. Zaluzec
Argonne National Laboratory
Electron Microscopy Center
NanoScience and Technology Division
9700 S. Cass Ave
Bldg 212 / A-143
Argonne, Illinois 60439 USA
Email: Zaluzec-at-aaem.amc.anl.gov


Tel: 530-NES-TORZ (530-637-8679) has Voice Mail
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Senior Scientist - Argonne National Laboratory
Fellow of the Microscopy Society of America
Senior Fellow the Computational Institute - University of Chicago
E.P. Wigner Fellow - Oak Ridge National Laboratory
Past President Microscopy Society of America
Adjunct Professor of Physics - Northern Illinois University &
the University of Illinois at Chicago
Visiting Professor of Microscopy - Manchester University

===========================================
TPMLab: http://tpm.amc.anl.gov
MMSite: http://www.amc.anl.gov
===========================================

The box said ...
"This program requires Win 95/98/NT or better..."
So I bought a Mac !

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From: bigelow-at-umich.edu
Date: Tue, 15 Sep 2015 21:15:20 -0500
Subject: [Microscopy] Choosing a Diffusion Pump Fluid

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Chapter 5 of my book "Vacuum Methods in Electron Microscopy" (Wilbur C.
Bigelow. Portland Press, 1994) contains a rather extensive discusswion
of the characteristics of varipus common diffusion pump fluids, plus a
discussion of the factors to consider in chosing a fluid.

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From: jerry.biehler-at-gmail.com
Date: Tue, 15 Sep 2015 21:53:12 -0500
Subject: [Microscopy] Re: Converting diffusion pumps to Fomblin

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Fomblin is great if you are pumping something reactive like oxygen or fluorine. But for a EM you just want something that is low backstreaming. Look at something like Santovac 5, that is what is used in Jeol scopes. It is pretty spendy.

Also look at adding a alumina-media fore line trap, this will help stop mechanical pump oil from back streaming into the scope during roughing and contaminating the santovac.

I did the expensive route and replaced the diff pump with a Varian turbo backed with a Edwards oilless scroll pump. I think those two pumps are worth more than my SEM.

-Jerry

} On Sep 15, 2015, at 4:57 PM, vray-at-partbeamsystech.com wrote:
}
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} Dear Listers,
}
} Realizing that the request may be considered a bit naiive, but could
} someone please share, or point me to good resource on choosing fluids
} for diffusion pumps? Maybe even cross-reference table for Fomblin and
} hydrocarbon oils?
}
} I am trying to return old Electroscan SEM back to life and considering
} charging Fomblin instead of mineral oil into its Varian M-2 dirrusion
} pumps...
}
} Thanks beforehand,
} --
} Valery Ray - also with AIM Lab, UMDCP
} =======================================
} PBS&T, MEO Engineering Co., Inc.
} 290 Broadway, Suite 298
} Methuen, MA 01844, USA
} Phone: +1-978-296-5063
} E-Mail: vray-at-partbeamsystech.com
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}
} ==============================Original Headers==============================
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From: eikonika-at-otenet.gr
Date: Wed, 16 Sep 2015 02:03:09 -0500
Subject: [Microscopy] TEM after SEM on the same sample?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello
Has anybody done TEM after SEM on the same sample (talking about soft animal
tissue) with good or acceptable morphology?
Thanks -yorgos

Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
************************************


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From: W.Muss-at-salk.at
Date: Wed, 16 Sep 2015 02:28:52 -0500
Subject: [Microscopy] Re: TEM after SEM on the same sample?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Good morning all,

Yorgos,
it will depend on tissue and parameters of ..you know...(treatment prior to as well as fixation, processing for SEM, observation in SEM and then parameters of reprocessing specs for TEM.)
It can be done and can be a valuable supplementing info to the images documented by SEM.
(will send you an old EMSA-MSA-abstract [1990, with images] with an example of "arterial" SEM to TEM by separate-personal - mail),

best wishes and regards,
Wolfgang

Wolfgang MUSS PhD
Member of MSA
SALZBURG,
AUSTRA
=====================================================================

Von: eikonika-at-otenet.gr [mailto:eikonika-at-otenet.gr]
Gesendet: Mittwoch, 16. September 2015 09:11
An: Muß Wolfgang
Betreff: [Microscopy] TEM after SEM on the same sample?

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Hello
Has anybody done TEM after SEM on the same sample (talking about soft animal tissue) with good or acceptable morphology?
Thanks -yorgos

Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
************************************
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10, 38 -- From W.Muss-at-salk.at Wed Sep 16 02:28:51 2015
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From: greggps-at-umich.edu
Date: Wed, 16 Sep 2015 08:04:24 -0500
Subject: [Microscopy] Ask a Microscopist

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I would explain that: 1) Every cell is unique, therefore a sample size
of one is not scientifically relevant. (statistics). 2) EM sample
preparation is somewhat time intensive, and it would be a poor value
to not see more of the sample after that effort.

Good luck,
~Gregg

Gregg Sobocinski
Microscope Imaging Specialist
University of Michigan, MCDB Dept.
Ann Arbor, Michigan
USA

On Tue, Sep 15, 2015 at 3:02 PM, {oshel1pe-at-cmich.edu} wrote:
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} } Ask a Microscopist
} }
} }
} } The following Ask a Microscopist form submission was received from your website.
} }
} }
} } Name: Connie Cummings
} }
} } School: MSA Member
} }
} } Grade/Education Level: Graduate
} }
} } Location: Durham, NC US
} }
} } Email: ultrapathimaging-at-gmail.com
} }
} } Subject: Sampling
} }
} } Your Question: An ongoing hair-pulling dispute between me, the microscopist, and almost every person doing research: Why did you take so many photomicrographs for each sample? Wouldn't say two or three photographs be just as good as the 5 to 10 you took. I, the investigation, still can't get over you embedding 6 blocks and sectioning all those blocks as semi-things!
} } HOW DO YOU HANDLE THIS SCENARIO? HOW DO YOU DEMONSTRATE THAT MORE IN EM IS ACTUALLY BETTER!
} }
}
}
}
} ==============================Original Headers==============================
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From: oshel1pe-at-cmich.edu
Date: Wed, 16 Sep 2015 08:05:03 -0500
Subject: [Microscopy] Re: TEM after SEM on the same sample?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Yorgos,

Yes. EDS, even. I just had the sections (thin sections) mounted on the
TEM grid ready for the TEM, then put them in the SEM. This works best if
the SEM stub has hole drilled in it just less than 3 mm diameter, so
that there is a void space below the grid with samples.
Be careful though. The lower kVs used in SEM will result in greater
beam-stopping by the sample, therefore more energy deposited in the
sample and a greater likelihood of rupturing the section or any
supporting film.

Phil

} Hello
} Has anybody done TEM after SEM on the same sample (talking about soft animal
} tissue) with good or acceptable morphology?
} Thanks -yorgos
}
} Dr Yorgos Nikas
} Athens Innovative Microscopy
} Skra 36 Voula 16673 GREECE
}
} Tel/fax +30 210 8957677
} mobile +30 6945 107477
} www.eikonika.net www.aim.cat
} ************************************

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: W.Muss-at-salk.at
Date: Wed, 16 Sep 2015 08:23:57 -0500
Subject: [Microscopy] Re: TEM after SEM on the same sample?

Contents Retrieved from Microscopy Listserver Archives
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Good morning all,

Yorgos,
it will depend on tissue and parameters of ..you know...(treatment prior to as well as fixation, processing for SEM, observation in SEM and then parameters of reprocessing specs for TEM.)
It can be done and can be a valuable supplementing info to the images documented by SEM.
(will send you an old EMSA-MSA-abstract [1990, with images] with an example of "arterial" SEM to TEM by separate-personal - mail),

best wishes and regards,
Wolfgang

Wolfgang MUSS PhD
Member of MSA
SALZBURG,
AUSTRA
=====================================================================

Von: eikonika-at-otenet.gr [mailto:eikonika-at-otenet.gr]
Gesendet: Mittwoch, 16. September 2015 09:11
An: Muß Wolfgang
Betreff: [Microscopy] TEM after SEM on the same sample?

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Hello
Has anybody done TEM after SEM on the same sample (talking about soft animal tissue) with good or acceptable morphology?
Thanks -yorgos

Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
************************************
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From: bioanalytics-at-ibilabs.com
Date: Wed, 16 Sep 2015 08:36:42 -0500
Subject: [Microscopy] Kevex Omicron XRF

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Hi,
Does anyone have experience with the kevex omicron xrf I am in need of
some information with respect to analyzing the readings.

Alex Besenyo PhD


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From: microscopy.listserver-at-gmail.com
Date: Wed, 16 Sep 2015 09:11:08 -0500
Subject: [Microscopy] viaWWW:Investigator's Questions about Sampling, Sectioning,

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Title-Subject: [Filtered] Investigator's Questions about Sampling, Sectioning, Photomicrographs

Message: Hi, If you read this yesterday, then I submitted my question in the right place so you can
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In an ongoing hair-pulling dispute between me, the microscopist, and almost every person doing
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HOW DO YOU HANDLE THIS SCENARIO? HOW DO YOU DEMONSTRATE THAT MORE IN EM IS ACTUALLY BETTER!


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From: oshel1pe-at-cmich.edu
Date: Wed, 16 Sep 2015 09:14:39 -0500
Subject: [Microscopy] Re: TEM after SEM on the same sample?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I should add that I've also done SEM-then-TEM on tissue samples prepared
for TEM, en bloc stained or not, then dried and sputter coated for SEM.
After the SEM, "rehydrate" in 100% ethanol, embed and section for TEM.
The morphology in the thin sections likely won't be as good as tissue
processed for TEM, embedded, sectioned, stained (or not), but depending
on the study, it can still be useful.
Imaging something like (vertebrate liver) bile canaliculi first in the
SEM, then in sections in the TEM is a good example of this.
Note: the sputter-coated layer of metal causes no issues when sectioning.

Phil

Yorgos,

Yes. EDS, even. I just had the sections (thin sections) mounted on the
TEM grid ready for the TEM, then put them in the SEM. This works best if
the SEM stub has hole drilled in it just less than 3 mm diameter, so
that there is a void space below the grid with samples.
Be careful though. The lower kVs used in SEM will result in greater
beam-stopping by the sample, therefore more energy deposited in the
sample and a greater likelihood of rupturing the section or any
supporting film.

Phil

} Hello
} Has anybody done TEM after SEM on the same sample (talking about soft animal
} tissue) with good or acceptable morphology?
} Thanks -yorgos
}
} Dr Yorgos Nikas
} Athens Innovative Microscopy
} Skra 36 Voula 16673 GREECE
}
} Tel/fax +30 210 8957677
} mobile +30 6945 107477
} www.eikonika.net www.aim.cat
} ************************************

--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: baskin-at-bio.umass.edu
Date: Wed, 16 Sep 2015 12:34:08 -0500
Subject: [Microscopy] Re: protocol for fixing chitin

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,
Can someone lead me to a good set of protocols for fixing chitin. My biology friends tell me that conventional methods for fixing chitin often fail to adhere the plastic to the fibers. I am doing an analytical study of the inorganic components in the chitin so I don’t want to use any staining and I want to preserve the integrity of the Ca phases present.
Thanks from a materials oriented microscopist!
Ken

Kenneth JT Livi, PhD
Director, Materials Characterization and Processing Center and HRAEM
Materials Science and Engineering
3400 N Charles Street
Johns Hopkins University
Baltimore, Maryland 21218 USA
klivi-at-jhu.edu




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From advertise.bz222p-at-gmail.com Wed Sep 16 12:18:42 2015
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Message-ID: {93F1D370.1CBAF490-at-gmail.com}

Hi,
I work on cell walls of plants not fungi. But I believe the issue
is related. From my reading of the literature (and this is far from
complete), classical chemical crosslinking fixatives, like formaldhyde
and glutaraldehyde, react to only a limited extent with cell wall
polymers. I have always used fixatives when I want to keep the tissue or
cytoplasm in good shape. But the wall itself I think does not need
fixation (except perhaps to inactivate cell wall degrading enzymes that
live out there). Cell walls are tough and can withstand typical
dehydration / embedding schedules without too much trouble. You wrote
about plastic adhering to the chitin. This seems like more of an
infiltrating/embedding issue. An old trick that works to embed certain
tricky plant samples is to start infiltrating with really low
concentrations of your plastic, like 1% then 2%, 5%, 10% and then as
normal.

Hope this helps,
Tobias Baskin

On 9/16/15 10:49 AM, klivi-at-jhu.edu wrote:
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
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} Dear All,
} Can someone lead me to a good set of protocols for fixing chitin. My biology friends tell me that conventional methods for fixing chitin often fail to adhere the plastic to the fibers. I am doing an analytical study of the inorganic components in the chitin so I don’t want to use any staining and I want to preserve the integrity of the Ca phases present.
} Thanks from a materials oriented microscopist!
} Ken
}
} Kenneth JT Livi, PhD
} Director, Materials Characterization and Processing Center and HRAEM
} Materials Science and Engineering
} 3400 N Charles Street
} Johns Hopkins University
} Baltimore, Maryland 21218 USA
} klivi-at-jhu.edu
}
}

--
__ ___ ^ ___ ___ Tobias I. Baskin
/ \ / / \ / \ Professor
/ / / / \ \ \ Biology Department
/ __/ /__ /___ \ \ \__ University of Mass.
/ / / \ \ \ 611 N. Pleasant St.
/ / / \ \ \ Amherst, Massachusetts
/ /___ / \ \___/ \_____ USA 413-545-1533
www.bio.umass.edu/biology/baskin


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From: oshel1pe-at-cmich.edu
Date: Wed, 16 Sep 2015 13:05:50 -0500
Subject: [Microscopy] Re: protocol for fixing chitin

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Ken,

Any chitin in particular? Arthropod cuticle, fungus, or somebody else?
This is a ubiquitous polysaccharide, but not necessarily identical.
Especially for minerals, like Ca.
And: Your question implies you're wanting to do TEM, but perhaps SEM
would be better? If you're not interested in the ultrastructure of
biological components (like cells), you could let the critter dry, then
cryofracture in liquid nitrogen. This would expose the internal
structure of the chitin and contained mineralized phases.
If you need a polished surface for x-ray spectroscopy or EBSD, then this
wouldn't work.

Phil

} Dear All,
} Can someone lead me to a good set of protocols for fixing chitin. My biology friends tell me that conventional methods for fixing chitin often fail to adhere the plastic to the fibers. I am doing an analytical study of the inorganic components in the chitin so I don’t want to use any staining and I want to preserve the integrity of the Ca phases present.
} Thanks from a materials oriented microscopist!
} Ken
}
} Kenneth JT Livi, PhD
} Director, Materials Characterization and Processing Center and HRAEM
} Materials Science and Engineering
} 3400 N Charles Street
} Johns Hopkins University
} Baltimore, Maryland 21218 USA
} klivi-at-jhu.edu
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

==============================Original Headers==============================
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From: jkrupp-at-deltacollege.edu
Date: Wed, 16 Sep 2015 13:27:07 -0500
Subject: [Microscopy] Re: protocol for fixing chitin

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


On Sep 16, 2015, at 8:20 AM, klivi-at-jhu.edu wrote:

}
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} Dear All,
} Can someone lead me to a good set of protocols for fixing chitin. My biology friends tell me that conventional methods for fixing chitin often fail to adhere the plastic to the fibers. I am doing an analytical study of the inorganic components in the chitin so I don’t want to use any staining and I want to preserve the integrity of the Ca phases present.
} Thanks from a materials oriented microscopist!

I have never tried this, but I remember way back that some of my materials science friends said they needed a secret ingredient to make the embedding plastic stick to their samples.

I think I remember it as something called Z-1, but a search didn't find anything. Looked at EMS and they have Z-6040 which looks like it's supposed to do the same thing.

Might be worth a try.

Jon

Jonathan Krupp
Applied Science, Business & Technology
San Joaquin Delta College
5151 Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu

Find us on Facebook -at-
Electron Microscopy at SJ Delta College










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From: jkrupp-at-deltacollege.edu
Date: Wed, 16 Sep 2015 13:50:46 -0500
Subject: [Microscopy] New Delta students

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

It's a new school year and I have alerted my EM students that they should follow the Listserver to learn more about microscopy and, if the can get up the courage, to use it for questions they can't otherwise figure out.

Please be kind to these students, some don't have any experience with listservers and may be a little rough around the edges. They are mostly good students trying to become better scientists.

Thanks

Jon


Jonathan Krupp
Applied Science, Business & Technology
San Joaquin Delta College
5151 Pacific Ave.
Stockton, CA 95207
209-954-5284
jkrupp-at-deltacollege.edu

Find us on Facebook -at-
Electron Microscopy at SJ Delta College










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From: wtivol-at-sbcglobal.net
Date: Wed, 16 Sep 2015 18:43:33 -0500
Subject: [Microscopy] Re: protocol for fixing chitin

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Yorgos

I did a lot of this in the 1980's on human ovary. We were looking for particular epithelia cell populations so we would find the cells in the SEM, dissect out the area and then do TEM on that area.

As a control we also worked backwards. If we saw the cell population of interest in TEM sections, or semi-thin sections, we would then dissolve out the embedding resin and look at the block in the SEM.

Worked quite well and the work was published. It was related to damage done to the epithelia layer of the ovary during surgical procedures. The ultrastructure in the TEM after SEM preparation wasn't super good but it gave the information that was required.

This was all pre-PDF and pre-computers so give me a few days and I will dig out my old notes, scan them and send them to you.

Have a great day

Allan




On 16/09/2015, at 7:17 PM, {eikonika-at-otenet.gr}
{eikonika-at-otenet.gr} wrote:

}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hello
} Has anybody done TEM after SEM on the same sample (talking about soft animal
} tissue) with good or acceptable morphology?
} Thanks -yorgos
}
} Dr Yorgos Nikas
} Athens Innovative Microscopy
} Skra 36 Voula 16673 GREECE
}
} Tel/fax +30 210 8957677
} mobile +30 6945 107477
} www.eikonika.net www.aim.cat
} ************************************

Allan Mitchell
Microscopy Otago - Electron Microscopy
c/- Department of Anatomy
Otago School of Medical Sciences
P.O. Box 913
Dunedin
New Zealand

Phone (03) 479 5642 or 479 7301
Fax (03) 479 5086 or 479 7254
EM Centre: http://ocem.otago.ac.nz/





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From mike.sfsd4f564s6df45dsriam-at-gmail.com Wed Sep 16 16:44:08 2015
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} On Sep 16, 2015, at 11:48 AM, jkrupp-at-deltacollege.edu wrote:
}
} } Dear All,
} } Can someone lead me to a good set of protocols for fixing chitin. My biology friends tell me that conventional methods for fixing chitin often fail to adhere the plastic to the fibers. I am doing an analytical study of the inorganic components in the chitin so I don’t want to use any staining and I want to preserve the integrity of the Ca phases present.
} } Thanks from a materials oriented microscopist!
}
} I have never tried this, but I remember way back that some of my materials science friends said they needed a secret ingredient to make the embedding plastic stick to their samples.
}
} I think I remember it as something called Z-1, but a search didn't find anything. Looked at EMS and they have Z-6040 which looks like it's supposed to do the same thing.
}
} Might be worth a try.
}
} Jon

Dear Jon & Ken,
I think that (at least some kinds of) chitin have a waxy coating. If that is true of your chitin, Ken, and if the wax structure is part of what you’re interested in—it may contain some Ca—any additive that could dissolve the wax will be problematic. Perhaps Phil’s suggestion of SEM to characterize the wax (if any), then prep for TEM would be best. Can chitin be placed in the SEM without treatment and/or coating? If so, then I’d definitely try it.
Yours,
Bill





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From: oshel1pe-at-cmich.edu
Date: Thu, 17 Sep 2015 07:21:36 -0500
Subject: [Microscopy] protocol for fixing chitin

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Bill,

Waxy epicuticles are common in insects and terrestrial arthropods, but
that's about it. Not part of the chitin per se. And any wax has an
unfortunate tendency to melt under the beam. Cryomethods are needed to
study it - and the wax on plant leaves.
That said, waxy coats on critters and plants are very poorly studied and
I'm sure have more uses than just slowing or stopping dessication.

Phil

} } On Sep 16, 2015, at 11:48 AM, jkrupp-at-deltacollege.edu wrote:
} }
} } } Dear All,
} } } Can someone lead me to a good set of protocols for fixing chitin. My biology friends tell me that conventional methods for fixing chitin often fail to adhere the plastic to the fibers. I am doing an analytical study of the inorganic components in the chitin so I don’t want to use any staining and I want to preserve the integrity of the Ca phases present.
} } } Thanks from a materials oriented microscopist!
} }
} } I have never tried this, but I remember way back that some of my materials science friends said they needed a secret ingredient to make the embedding plastic stick to their samples.
} }
} } I think I remember it as something called Z-1, but a search didn't find anything. Looked at EMS and they have Z-6040 which looks like it's supposed to do the same thing.
} }
} } Might be worth a try.
} }
} } Jon
}
} Dear Jon& Ken,
} I think that (at least some kinds of) chitin have a waxy coating. If that is true of your chitin, Ken, and if the wax structure is part of what you’re interested in—it may contain some Ca—any additive that could dissolve the wax will be problematic. Perhaps Phil’s suggestion of SEM to characterize the wax (if any), then prep for TEM would be best. Can chitin be placed in the SEM without treatment and/or coating? If so, then I’d definitely try it.
} Yours,
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: les-at-zsgenetics.com
Date: Thu, 17 Sep 2015 16:02:29 -0500
Subject: [Microscopy] carbon coating

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi,
What would anyone out there recommend for a TEM grid carbon coater for
ultraclean carbon deposition (dry/UHV system), with precision in the 1-5 nm
thickness range and a real-time thickness monitor?

Regards,
Larry Scipioni
ZS Genetics


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From: Reinhard.Rachel-at-biologie.uni-regensburg.de
Date: Fri, 18 Sep 2015 01:48:05 -0500
Subject: [Microscopy] C-Coater

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Larry,
for carbon coating, you may prefer to use a turbo-pumped system and a fast
evaporator.
you may have a try on two systems which I have experience with:
- Cressington turbo coater 208 (carbon rod and e-beam guns are available)
- Leica ACE series (carbon rod and carbon wire are available, to my knowledge;
e-beam?)
other machines from other companies will do the job as well, I assume.

quartz thickness monitor YES; but real-time thickness: you will have to wait
for a few (5 to 10) seconds until the system settles (physics of heat
transfer). Upon Carbon evaporation the quartz is getting heated as well and
will give you some numbers which are not realistic. At the end, we find this
reproducible.
Both machines work fine, in our hands, for light shadowing of bio-samples for
STEM, TEM or SEM.
try to find a lab where you can have a test experiment with your samples, or
convince the sales rep to give you a system for a week for several tries.
As you do not explicitly state what you are going to do:
"TEM grid carbon coater": if you want to produce your own carbon supporting
film, you may have first to shadow carbon onto mica, then float this off (on a
water surface, e.g. ), and then pick up the C-film with (hydrophilized,
glow-discharged) grids. Standard IMO.
kind regards - Reinhard

--
Prof. Dr. Reinhard Rachel
University of Regensburg
Centre for EM / Anatomy
Faculty of Biology & Preclin. Med.
Universitaetsstrasse 31
D-93053 Regensburg - Germany
tel +49 941 943 -2837, -1720
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29

Next microscopy conferences:
- 16th Europ Microsc Congress EMC
http://www.emc2016.fr/en/
28 Aug - 2 Sept 2016 in Lyon, FR
- Microscopy Conference 2017
Dreiländertagung Lausanne, CH
20-25 August 2017
- next Microbiol. conferences:
VAAM - Annual Conf March 13-16, 2016, Jena



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From: bicarbaj-at-mtholyoke.edu
Date: Fri, 18 Sep 2015 10:00:10 -0500
Subject: [Microscopy] premade aqueous OsO4 ampoules

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello everyone,

Could others please share their experiences with the premade aqueous
OsO4 solutions?

I have been making my own 4% solution, storing it in the fridge, and
diluting a small volume just before use.

However our EM lab isn't very busy (3-4 preps every few months,
although I am working on trying to get more users!) and I end up
having to throw out a lot of the 20ml solution that I make; membranes
start looking kind of crappy and with the older solution even if the
solution still looks relatively clear. I also see a lot of black
specks in my unstained sections.

I don't know of anyone who uses the premade ampoules, so I don't know
if there are any significant differences in image quality. They come
in such small volumes, which would be really convenient for me!

Thanks in advance!

-Blanca

-----------------------------------------
Blanca Carbajal Gonzalez, M.S.
Director of Microscopy
Science Center
50 College St
Mount Holyoke College
Clapp Laboratory 123
Office: 413-538-3118
Cell: 559-905-7138
bicarbaj-at-mtholyoke.edu
MHC Microscopy

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8, 28 -- Subject: premade aqueous OsO4 ampoules
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From: Robert.Dromgoole-at-pnnl.gov
Date: Fri, 18 Sep 2015 11:49:33 -0500
Subject: [Microscopy] PNNL seeks a Post Doc, described below:

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I'm writing to this group on a referral basis. I would greatly appreciate a reply if you know of anyone in your professional network that would be a fit for the expertise we are trying to find. The Pacific Northwest National Laboratory is seeking a Post Doc focusing on Scanning Transmission Electron Microscopy. This postdoctoral position is best suited for a person who has recently obtained their Ph.D. on materials characterization primarily using aberration-corrected scanning transmission electron microscopy. The successful candidate will join a team that uses FIB, aberration corrected TEM/STEM, and other characterization methods to understand complex interfaces, and their effect on the material's function. Some interfaces of interest are metal/oxide and metal/semiconductor, and vary from crystalline to amorphous.

Requirements:

- Ph.D. in physics, materials science, engineering, mathematics, chemistry, or related field.
- Must have experience operating Cs-corrected STEMs and performing careful analysis of data.
- Experience preparing specimens using the focused ion beam (FIB) preferred.
- Experience and an interest in image simulations and image analysis preferred. Experience with - MATLAB, C++, or other environments for algorithm development is highly desirable.
- Ability to obtain a security clearance, which requires U.S. Citizenship

Link to position:

https://www.linkedin.com/jobs2/cap/view/72834057?pathWildcard=72834057&trk=job_capjs

For an overview of PNNL see:

https://www.youtube.com/watch?v=z0PckHIDIKE

_________________________________________________
Rob Dromgoole
Director Recruiting National Security
Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999 MSIN K8-62
Richland, WA 99352
Tel:  509-375-2441
Mobile:  509-554-9621
robert.dromgoole-at-pnnl.gov
www.pnnl.gov



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From: lkerr-at-mbl.edu
Date: Fri, 18 Sep 2015 12:24:44 -0500
Subject: [Microscopy] premade aqueous OsO4 ampoules

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Blanca,

For the reasons you mention we have been making use of the premade aqueous OsO4 solutions for years. It works well for our own use and it is convenient when another user comes by asking for a few ml's of OsO4. Occasionally we still make up a solution for odd ball recipes or large quantities.

Thanks,
Louie

----- Original Message -----
X-from: bicarbaj-at-mtholyoke.edu
To: lkerr-at-mbl.edu
Sent: Friday, September 18, 2015 11:01:37 AM

Hello everyone,

Could others please share their experiences with the premade aqueous
OsO4 solutions?

I have been making my own 4% solution, storing it in the fridge, and
diluting a small volume just before use.

However our EM lab isn't very busy (3-4 preps every few months,
although I am working on trying to get more users!) and I end up
having to throw out a lot of the 20ml solution that I make; membranes
start looking kind of crappy and with the older solution even if the
solution still looks relatively clear. I also see a lot of black
specks in my unstained sections.

I don't know of anyone who uses the premade ampoules, so I don't know
if there are any significant differences in image quality. They come
in such small volumes, which would be really convenient for me!

Thanks in advance!

-Blanca

-----------------------------------------
Blanca Carbajal Gonzalez, M.S.
Director of Microscopy
Science Center
50 College St
Mount Holyoke College
Clapp Laboratory 123
Office: 413-538-3118
Cell: 559-905-7138
bicarbaj-at-mtholyoke.edu
MHC Microscopy


--
Louie Kerr | Director, Microscopy and Research Services | Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543
508-289-7273 | lkerr-at-mbl.edu | www.mbl.edu


==============================Original Headers==============================
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From: microscopy.gmb-at-gmail.com
Date: Fri, Sep 18, 2015 at 12:36 PM
Subject: [Microscopy] premade aqueous OsO4 ampoules

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Blanca,

I worked in biological microscopy for several years prior to a long
career in an industrial polymer microscopy. In the bio lab, we
invariably made our OsO4 solutions from crystalline OsO4. In the
polymer microscopy lab, we rarely used OsO4, often in short bursts.
Invariably, I was skeptical of the pre-made solutions because many of
the vials went to waste as indicated by black precipitate on the inner
surface of the vials and loss of amber color of the solution.

The issue, as you indicated, is quality versus price (through waste).
To maintain high quality, I suggest you keep OsO4 crystals on hand and
make fresh batches as needed. The price of the crystals is less than
the prepared solution and you can be assured of the quality: Electron
Microscopy Sciences sells 1 gram of OsO4 crystals for $32 versus $53
for 10, 2 ml vials of 4% OsO4 solution.

When you make up a batch OsO4 solution, break it up into several small
vials and store each
under a inert gas (nitrogen or argon) head to slow degradation of the
oxide. When a vial begins to go bad, hopefully the unopened vials are
still fresh(er) and usable.

All the best,

Gary Brown
Polymer Microscopy Consultant



---------- Forwarded message ----------
X-from: {lkerr-at-mbl.edu}

Hi Blanca,

For the reasons you mention we have been making use of the premade
aqueous OsO4 solutions for years. It works well for our own use and it
is convenient when another user comes by asking for a few ml's of
OsO4. Occasionally we still make up a solution for odd ball recipes or
large quantities.

Thanks,
Louie

----- Original Message -----
X-from: bicarbaj-at-mtholyoke.edu
To: lkerr-at-mbl.edu
Sent: Friday, September 18, 2015 11:01:37 AM

Hello everyone,

Could others please share their experiences with the premade aqueous
OsO4 solutions?

I have been making my own 4% solution, storing it in the fridge, and
diluting a small volume just before use.

However our EM lab isn't very busy (3-4 preps every few months,
although I am working on trying to get more users!) and I end up
having to throw out a lot of the 20ml solution that I make; membranes
start looking kind of crappy and with the older solution even if the
solution still looks relatively clear. I also see a lot of black
specks in my unstained sections.

I don't know of anyone who uses the premade ampoules, so I don't know
if there are any significant differences in image quality. They come
in such small volumes, which would be really convenient for me!

Thanks in advance!

-Blanca

-----------------------------------------
Blanca Carbajal Gonzalez, M.S.
Director of Microscopy
Science Center
50 College St
Mount Holyoke College
Clapp Laboratory 123
Office: 413-538-3118
Cell: 559-905-7138
bicarbaj-at-mtholyoke.edu
MHC Microscopy


--
Louie Kerr | Director, Microscopy and Research Services | Marine
Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543
508-289-7273 | lkerr-at-mbl.edu | www.mbl.edu


==============================Original Headers==============================
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From: eikonika-at-otenet.gr
Date: Mon, 21 Sep 2015 11:33:24 -0500
Subject: [Microscopy] Fw: TEM after SEM on the same sample?

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Greetings Blanca,

There is one consideration you may wish to put on the balance in relation to the choice between making your own solutions or using premade dilute solutions in small vials. That is worker risk and safety. As I am sure you know, this chemical happens to be extremely and acutely toxic and can cause permanent blindness if it gets into the eye. As scientists, many of us work with some very dangerous and toxic compounds as part of our daily work. In our laboratory, we endeavor to reduce or mitigate risks anyway possible within reason. Our concentrated trace metal acids are purchased in small 500mL bottles by the case and we have dispensing units that go right into the bottle to allow direct delivery of the desired acid and avoid both contamination of the reagent and the risk of exposure from having a larger bottle of acid dropped or spilled during transfer. We use prepared pesticide solutions from certified vendors (ISO) as well as stock inorganic standards already prepared in solution at 10PPM/125mL bottles (far more pure than we could make them in the lab and certified too). When we purchase BF3 MeOH, TFA or TMCS as well as other highly reactive derivatization reagents, I buy them in 1mL x 10 ampoules so that there is never more than 1mL being used at one time. This does add cost to the laboratory operations but I find it worth it for our needs. All that said, it does not mean I fear dangerous or toxic chemicals but rather have great respect for them and find the added cost well worth the peace of mind. I am grateful I can make that choice and I realize not everyone can due to budget limitations.

We currently do not use OsO4 in our microscopy laboratory group but we may have need of it in the future. Should that be the case, I would probably purchase the prepared solutions in small ampoules unless we found the quality to be lacking. Sometimes one vendor's quality is far superior to another and that is worth investigating in this case due to differing experiences shared by other experienced users of OsO4.

I just wanted to bring safety considerations into the conversation because anytime one is dealing with acutely toxic compounds, safety and ways in which we can reduce risks in the lab deserve our consideration. This is especially true in educational environments where students are just learning the techniques.

Sincerely,

James Neal-Kababick
Director
Flora Research Laboratories, LLC
An FDA and DEA Registered & Inspected Laboratory
Fellow AOAC International
President Elect, PSW-AOAC
Vice Chair USP {2251} ADSDDA Expert Panel
United States Pharmacopeia NBDS Expert Committee
USP Joint Standards Setting Subcommittee for Reference Standards (JS3)
Adjunct Faculty Bastyr University
Botanical Medicine Department
1-541-472-0980 phone
jimk-at-floraresearch.com
www.floraresearch.com


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Hello everyone,

Could others please share their experiences with the premade aqueous
OsO4 solutions?

I have been making my own 4% solution, storing it in the fridge, and diluting a small volume just before use.

However our EM lab isn't very busy (3-4 preps every few months, although I am working on trying to get more users!) and I end up having to throw out a lot of the 20ml solution that I make; membranes start looking kind of crappy and with the older solution even if the solution still looks relatively clear. I also see a lot of black specks in my unstained sections.

I don't know of anyone who uses the premade ampoules, so I don't know if there are any significant differences in image quality. They come in such small volumes, which would be really convenient for me!

Thanks in advance!

-Blanca

-----------------------------------------
Blanca Carbajal Gonzalez, M.S.
Director of Microscopy
Science Center
50 College St
Mount Holyoke College
Clapp Laboratory 123
Office: 413-538-3118
Cell: 559-905-7138
bicarbaj-at-mtholyoke.edu
MHC Microscopy


--
Louie Kerr | Director, Microscopy and Research Services | Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543
508-289-7273 | lkerr-at-mbl.edu | www.mbl.edu




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Name: Greg Ning

Organization: Penn State University

Title-Subject: [Filtered] TEM Job -at- Penn State Hershey Med

Message: Transmission Electron Microscopist – Microscopy Imaging Facility
The Pennsylvania State University College of Medicine, Hershey, Pennsylvania

The PSU College of Medicine seeks qualified applicants for a Transmission Electron Microscopist
position within our Core Facility. The successful candidate will be responsible for all aspects of
TEM sample preparation and image acquisition in a recently constructed 600 sq ft laboratory equipped
with a JEOL 1400 TEM, plus all needed sectioning and other equipment. The TEM facility is part of
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researchers, including CryoEM, Confocal, Multiphoton, and Deconvolution microscopy, and advanced
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Minimum qualifications for the position include a Bachelor’s Degree in Science (M.S. or Ph.D.
degrees in a relevant field would be a plus) with extensive hands-on experience in transmission
electron microscopy imaging, relevant sample preparation methods involving biological tissues and
cell lines, negative staining, immune-labeling procedures, and preferably additional core facility
management experience. The primary expertise required for the position will be in TEM microscopy and
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contact information for three references. This should be sent to Dr. John W. Wills, Chair of the TEM
search committee, at jww4-at-psu.edu. Candidates should also apply online at https://psu.jobs/job/58857.

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From advertisebz09ejwih-at-gmail.com Mon Sep 21 10:37:43 2015
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Many thanks to everybody who responded to my posting on doing TEM after SEM
on the same sample. I got interesting responses from people they have done
it -and also from people they have not done it. It looks like this SEM-} TEM
combination is feasible but not very popular (I didn't understand very well
why).
Best wishes
yorgos
Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
************************************


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From: oshel1pe-at-cmich.edu
Date: Mon, 21 Sep 2015 14:18:52 -0500
Subject: [Microscopy] Re: Ask a Microscopist - School Microscope Preventive Maintenance

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Forwarded from "Ask a Microscopist"
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} Name: Steven Hill
}
} School: Adele C. Young Intermediate School
}
} Grade/Education Level: Middle School
}
} Location: Brigham City, UT US
}
} Email: steven.hill-at-besd.net
}
} Subject: Microscope Preventive Maintenance
}
} Your Question: Our light microscopes have not had any form of maintenance in years. We are looking for someone in Utah who could work on our microscopes. If you know of any, We would appreciate it very much.
}

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From: nizets2-at-yahoo.com
Date: Tue, 22 Sep 2015 05:49:47 -0500
Subject: [Microscopy] clean glass slides for dark field microscopy

Contents Retrieved from Microscopy Listserver Archives
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Dear Listers,

I am looking for mineral (sub-micro) particles in mouse organs by TEM and at the same time I am trying to localize them by LM in dark field mode in semi-thin sections (300nm).
Since they have a size under 1ľm I just hope that I can find them at all in LM in dark field mode but this is another story.
At the moment my problem is the dirt on the glass slides. I tried to clean the glass slides with detergent, sonication and ethanol but I still have too much dirt in the background.

Does everybody have a proven protocol and want to share it with me?
Thank you in advance.

Stephane


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5, 36 -- From: Stephane Nizet {nizets2-at-yahoo.com}
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From: steven.345345.f-at-gmail.com
Date: 22 Sep 2015 17:10:42 +0300
Subject: re: 50% off on social website traffic

Contents Retrieved from Microscopy Listserver Archives
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Apologies for coming back, I got some more good comments and would like to
conclude:
With SEM-} TEM you get a global idea of the surface morphology of the tissue
piece and maybe, if you orient the specimen welll, of the particular section
you look in TEM and this is very important. The cost is that you loose in
TEM quality and also, it requires a high level of collaboration between
microscopist, investigator and technician to see all its benefits.
Cheers
yorgos


----- Original Message -----
X-from: {eikonika-at-otenet.gr}
To: {eikonika-at-otenet.gr}
Sent: Monday, September 21, 2015 7:48 PM

Dear Listers,

I have objectives on a Zeiss axioimager light microscope with a label "HD" and I am wondering what that means.
I can't find the information in the internet. Most of the info related to optics refers to high-definition of course, which makes the search quite hard.
I suspect that it means "Hellfeld/Dunkelfeld" (bright field/dark field) but I am not sure.
If it is the case, what makes these objectives so special? What is the feature which makes them more "dark field efficient"?

Regards
Stephane



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From steven.345345.f-at-gmail.com Tue Sep 22 09:11:07 2015
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From: steven.spurgeon-at-pnnl.gov
Date: Tue, 22 Sep 2015 12:30:29 -0500
Subject: [Microscopy] Bakeout chamber for cleaning STEM samples

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Tue, 22 Sep 2015 12:30:29 -0500

Hello everyone,

I’ve been trying to develop a procedure to clean our STEM samples prior to insertion into our ARM200CF microscope. In particular, we are trying to perform highly analytical work that involves long EELS / EDS mapping, so we would like to reduce hydrocarbon contamination on the surface of our samples.

Since most of our specimens are oxide lift outs, they are quite robust to heating and plasma cleaning. Typically after a lift out is completed I will plasma clean for 2-5 minutes prior to insertion; however, someone recently suggested baking our samples for a few hours at 50-100 ÂşC to further reduce contamination. It was also suggested that we place our heater in a bell jar-like setup so that we can pump on the sample during the annealing.

I am considering building such a setup, but I would like to see if anyone has constructed something like this before. I would very much appreciate any design suggestions or other tips to help us clean up our samples.

Thank you!
______________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate

Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999 MSIN:K8-87
Richland, WA 99352

Tel: +1-509-371-7123
steven.spurgeon-at-pnnl.gov
www.stevenspurgeon.com {http://www.stevenspurgeon.com/}
www.pnnl.gov {http://www.pnnl.gov/}


==============================Original Headers==============================
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8, 26 -- To: "Microscopy-at-microscopy.com" {Microscopy-at-microscopy.com}
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From: les-at-zsgenetics.com
Date: Tue, 22 Sep 2015 13:17:06 -0500
Subject: [Microscopy] Bakeout chamber for cleaning STEM samples

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Steve,
It definitely helps to bake - and not be shy about it. 160C for 8-12 hours (i.e. overnight) is good. I find that if that doesn't do it, it won't come clean. Our setup is not exactly home-made, but it consists of a Pfeiffer HiCube dry pumping station and an MTI quartz tube furnace. That way it is possible to do vacuum or air or to introduce other gas environments. And the temperature vs. time profile is programmable.
I can send you a picture if you're interested. May be overkill for you...
Regards,
Larry


-----Original Message-----
X-from: steven.spurgeon-at-pnnl.gov [mailto:steven.spurgeon-at-pnnl.gov]
Sent: Tuesday, September 22, 2015 2:03 PM
To: LES-at-ZSGENETICS.COM

Hello everyone,

I’ve been trying to develop a procedure to clean our STEM samples prior to insertion into our ARM200CF microscope. In particular, we are trying to perform highly analytical work that involves long EELS / EDS mapping, so we would like to reduce hydrocarbon contamination on the surface of our samples.

Since most of our specimens are oxide lift outs, they are quite robust to heating and plasma cleaning. Typically after a lift out is completed I will plasma clean for 2-5 minutes prior to insertion; however, someone recently suggested baking our samples for a few hours at 50-100 ºC to further reduce contamination. It was also suggested that we place our heater in a bell jar-like setup so that we can pump on the sample during the annealing.

I am considering building such a setup, but I would like to see if anyone has constructed something like this before. I would very much appreciate any design suggestions or other tips to help us clean up our samples.

Thank you!
______________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Fundamental and Computational Sciences Directorate

Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999 MSIN:K8-87
Richland, WA 99352

Tel: +1-509-371-7123
steven.spurgeon-at-pnnl.gov
www.stevenspurgeon.com {http://www.stevenspurgeon.com/} www.pnnl.gov {http://www.pnnl.gov/}


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From: allan.mitchell-at-stonebow.otago.ac.nz
Date: Tue, 22 Sep 2015 15:35:17 -0500
Subject: [Microscopy] Re: premade aqueous OsO4 ampoules

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi All

As a matter of curiosity, what is the consensus on the usable lifetime of a made up from crystal, 4% osmium in water stock solution, stored in a fridge?

While on the subject of osmium stock solution storage, do people clean their stock solution storage bottle between making up their osmium stock solutions?

Have a great day

Allan




On 19/09/2015, at 3:10 AM, {bicarbaj-at-mtholyoke.edu}
{bicarbaj-at-mtholyoke.edu} wrote:

}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hello everyone,
}
} Could others please share their experiences with the premade aqueous
} OsO4 solutions?
}
} I have been making my own 4% solution, storing it in the fridge, and
} diluting a small volume just before use.
}
} However our EM lab isn't very busy (3-4 preps every few months,
} although I am working on trying to get more users!) and I end up
} having to throw out a lot of the 20ml solution that I make; membranes
} start looking kind of crappy and with the older solution even if the
} solution still looks relatively clear. I also see a lot of black
} specks in my unstained sections.
}
} I don't know of anyone who uses the premade ampoules, so I don't know
} if there are any significant differences in image quality. They come
} in such small volumes, which would be really convenient for me!
}
} Thanks in advance!
}
} -Blanca
}

Allan Mitchell
Microscopy Otago - Electron Microscopy
c/- Department of Anatomy
Otago School of Medical Sciences
P.O. Box 913
Dunedin
New Zealand

Phone (03) 479 5642 or 479 7301
Fax (03) 479 5086 or 479 7254
EM Centre: http://ocem.otago.ac.nz/



Allan Mitchell
Microscopy Otago - Electron Microscopy
c/- Department of Anatomy
Otago School of Medical Sciences
P.O. Box 913
Dunedin
New Zealand

Phone (03) 479 5642 or 479 7301
Fax (03) 479 5086 or 479 7254
EM Centre: http://ocem.otago.ac.nz/





==============================Original Headers==============================
20, 22 -- From allan.mitchell-at-stonebow.otago.ac.nz Tue Sep 22 15:35:16 2015
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From: nsa2-at-leicester.ac.uk
Date: Wed, 23 Sep 2015 04:08:23 -0500
Subject: [Microscopy] premade aqueous OsO4 ampoules

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Morning,

I've not seen yet (I don't think?) any mention of freezing the Osmium samples. Is there a reason for this?

In this facility, I make up fifty 1ml aliquots of 2% aqueous osmium, from 1g osmium crystals, into clean 7ml flat bottom glass vials with PP screw cap lids with foil inserts (to prevent splashes and vapour seepage), and store them in the -20 freezer in double Tupperware boxes (one inside another - for extra safety) only taking out the required number of vials for each processing session. As they are such small quantities, they are safer to handle and defrost quickly. I have found that I can store the osmium in this way for years without noticing significant artefact.

I would also be interested to hear how people neutralise their osmium after use?

Thanks

Nat





----------------------------------------------------------------------------
The Microscopy ListServer -- CoSponsor: The Microscopy Society of America To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver

Hi All

As a matter of curiosity, what is the consensus on the usable lifetime of a made up from crystal, 4% osmium in water stock solution, stored in a fridge?

While on the subject of osmium stock solution storage, do people clean their stock solution storage bottle between making up their osmium stock solutions?

Have a great day

Allan




On 19/09/2015, at 3:10 AM, {bicarbaj-at-mtholyoke.edu} {bicarbaj-at-mtholyoke.edu} wrote:

}
}
}
} ----------------------------------------------------------------------
} ------ The Microscopy ListServer -- CoSponsor: The Microscopy Society
} of America To Subscribe/Unsubscribe --
} http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------
} ------
}
} Hello everyone,
}
} Could others please share their experiences with the premade aqueous
} OsO4 solutions?
}
} I have been making my own 4% solution, storing it in the fridge, and
} diluting a small volume just before use.
}
} However our EM lab isn't very busy (3-4 preps every few months,
} although I am working on trying to get more users!) and I end up
} having to throw out a lot of the 20ml solution that I make; membranes
} start looking kind of crappy and with the older solution even if the
} solution still looks relatively clear. I also see a lot of black
} specks in my unstained sections.
}
} I don't know of anyone who uses the premade ampoules, so I don't know
} if there are any significant differences in image quality. They come
} in such small volumes, which would be really convenient for me!
}
} Thanks in advance!
}
} -Blanca
}

Allan Mitchell
Microscopy Otago - Electron Microscopy
c/- Department of Anatomy
Otago School of Medical Sciences
P.O. Box 913
Dunedin
New Zealand

Phone (03) 479 5642 or 479 7301
Fax (03) 479 5086 or 479 7254
EM Centre: http://ocem.otago.ac.nz/



Allan Mitchell
Microscopy Otago - Electron Microscopy
c/- Department of Anatomy
Otago School of Medical Sciences
P.O. Box 913
Dunedin
New Zealand

Phone (03) 479 5642 or 479 7301
Fax (03) 479 5086 or 479 7254
EM Centre: http://ocem.otago.ac.nz/





==============================Original Headers==============================
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From: Z.Zhou-at-lboro.ac.uk
Date: Wed, 23 Sep 2015 04:28:16 -0500
Subject: [Microscopy] How to make holey carbon support film myself?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Fellow Microscopists,
Has anybody there prepared their own holey carbon film supports?
We usually use the film on Cu mesh grids. How is the mesh grid manufactured? What if I need it on a polymer grid?
How do you control the size of the holes? What is the range of the holes we can achieve?
Very grateful if you can share with me some pros and cons.
Zhaoxia

Dr Zhaoxia Zhou
Loughborough University, UK



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From: microscopy.gmb-at-gmail.com
Date: Wed, 23 Sep 2015 11:31:27 -0500
Subject: [Microscopy] Neutralization (reduction) of osmium tetroxide

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Hello Nat,

I always reduced osmium tetroxide and ruthenium tetroxide to their dioxides
using a sodium bisulfite solution (10 wt/vol %). Add an excess of the
bisulfite solution into the vial of the tetroxide and leave for a while, an
hour or more. This works well.

Some labs reduced osmium tetroxide with unsaturated vegetable oil.

Regards,

Gary M Brown
Polymer Microscopy Consultant

--

"An expert is a person who has made all the mistakes which can be made
in a very narrow field.” and "Prediction is very difficult, especially
if it's about the future." Niels Bohr


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From: benjamin.smith-at-ou.edu
Date: Wed, 23 Sep 2015 16:49:13 -0500
Subject: [Microscopy] LM Demonstrating the field and aperture diaphragm as well as

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Hey Microscopists,
For those of you teaching microscopy courses, it can be challenging to explain the field and aperture diaphragm and how they effect the cone of light emerging from the condenser. On a whim, I filled a cuvette with fluorescein in order to visualize the cone of light. The demonstration proved quite successful, so I made a movie of the demonstration, showing how the field diaphragm affects the width of the cone without impacting its angle, and the aperture diaphragm impacts the angle of the cone without affecting its width. Having the students see the cone also went a long way in helping them understand why axial resolution goes down with a lower NA.

Here is the link to the movie: https://youtu.be/06CQ6IIaDWs

The cuvette also allowed me to show the hollow cone generated in phase contrast and darkfield:
http://imgur.com/hswMRjH
http://imgur.com/Zl87dcr

The sectored ray in oblique illumination:
http://imgur.com/oerMkk0

As well as the solid cone in brightfield:
http://imgur.com/KZP3Sv0
http://imgur.com/akeiI0T

Small disclaimer, the oblique was a "poor man's" oblique done my misaligning the darkfield annulus and partially closing the aperture diaphragm, but I also like to show "poor man's" oblique to students to show how thinking a little outside the box can allow you to get the most out of your microscope.

Hope this helps,
Ben Smith

Benjamin E. Smith, Ph.D.
Samuel Roberts Noble Microscopy Laboratory
Research Scientist, Confocal Facility Manager
University of Oklahoma
Norman, OK 73019
E-mail: benjamin.smith-at-ou.edu
Voice 405-325-4391
FAX 405-325-7619
http://www.microscopy.ou.edu/

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From: wtivol-at-sbcglobal.net
Date: Wed, 23 Sep 2015 16:54:37 -0500
Subject: [Microscopy] Re: How to make holey carbon support film myself?

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} On Sep 23, 2015, at 2:40 AM, Z.Zhou-at-lboro.ac.uk wrote:
}
}
} Dear Fellow Microscopists,
} Has anybody there prepared their own holey carbon film supports?
} We usually use the film on Cu mesh grids. How is the mesh grid manufactured? What if I need it on a polymer grid?
} How do you control the size of the holes? What is the range of the holes we can achieve?
} Very grateful if you can share with me some pros and cons.
} Zhaoxia
}
} Dr Zhaoxia Zhou
} Loughborough University, UK
}
}
Dear Zhaoxia,
I have done so, and it is trickier than making films without holes. There are several protocols that work, but it may take some time to develop the necessary skills. I found the trickiest part to be the separation of the holey formvar from the glass slide. Commonly, the oil from the skin of one’s nose is used to coat the slide before dipping in formvar; however, in my case this oil did not work—it did work for former without holes. A solution of Apiazon L in petroleum ether did work for holey formvar. Another difficulty was that separating the film from the slide did not work when the humidity in the lab was high. I will let others answer your other questions.
Yours,
Bill





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From: microscopy.gmb-at-gmail.com
Date: Wed, Sep 23, 2015 at 5:08 PM
Subject: [Microscopy] Re: How to make holey carbon support film myself?

Contents Retrieved from Microscopy Listserver Archives
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Hello Zhaoxia,

Years ago, back when dinosaurs still roamed the earth, I made the
holey Formvar films for our lab. We didn't use carbon films back then
in the biological microscopy lab. I used the method described by

I used the method described by M A Hayat, Principles and Techniques of
Electron Microscopy (Biological Applications, Volume 1), Van Nostrand
Reinhold, 1970, p324-332. The method for production of Parlodian
(nitrocellulose) or Formvar (polyvinyl formal) plastic films is
straightforward but requires practice to learn the technique. The
method is the same for production of continuous and holey Parlodian
and Formvar films except that glycerol is added to the Parlodian or
Formvar solution prior to casting the films; the glycerol is insoluble
in the solvents used to dissolve the plastic films. The size of holes
in in holey films is proportional to the concentration of glycerol in
the mixture: 12% (vol/vol) glycerol gives holes with a maximum
diameter of approximately 25 um whereas 0.08% glycerol gives a maximum
hole size of 4 um.

Although you can learn the method of holey carbon film preparation, if
you don't do it often the process becomes very laborious and
time-consuming. I suggest you consider purchasing your holey carbon
film grids from an electron microscopy supply house. That's what I
did for the last 25 years.

The Hayat book can be found for $8 - $35 on Amazon.

Regarding your question about TEM grid manufacture: metallic TEM
grids are electroplated. I don't know how non-metallic grids such as
nylon are prepared.

Best regards,

Gary M Brown
Polymer Microscopy Consultant




} On Sep 23, 2015, at 2:40 AM, Z.Zhou-at-lboro.ac.uk wrote:
}
}
} Dear Fellow Microscopists,
} Has anybody there prepared their own holey carbon film supports?
} We usually use the film on Cu mesh grids. How is the mesh grid manufactured? What if I need it on a polymer grid?
} How do you control the size of the holes? What is the range of the holes we can achieve?
} Very grateful if you can share with me some pros and cons.
} Zhaoxia
}
} Dr Zhaoxia Zhou
} Loughborough University, UK
}
}
Dear Zhaoxia,
I have done so, and it is trickier than making films without
holes. There are several protocols that work, but it may take some
time to develop the necessary skills. I found the trickiest part to
be the separation of the holey formvar from the glass slide.
Commonly, the oil from the skin of one’s nose is used to coat the
slide before dipping in formvar; however, in my case this oil did not
work—it did work for former without holes. A solution of Apiazon L in
petroleum ether did work for holey formvar. Another difficulty was
that separating the film from the slide did not work when the humidity
in the lab was high. I will let others answer your other questions.
Yours,
Bill





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--

"An expert is a person who has made all the mistakes which can be made
in a very narrow field.” and "Prediction is very difficult, especially
if it's about the future." Niels Bohr


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From: wim.hagen-at-me.com
Date: Wed, 23 Sep 2015 21:04:05 -0500
Subject: [Microscopy] Re: Bakeout chamber for cleaning STEM samples

Contents Retrieved from Microscopy Listserver Archives
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Hi Steven,

Have done this using a turbo vacuum system we used for pumping holders, with a tube connected, covered by a vacuum flange with an electrical feedthrough (used parts of an an old penning gauge for that). Inside I clamped a 12VDC halogen lamp to produce heat. Our mechanical workshop machined a small open aluminium grid box which holds 16 grids. This goes into the tube, pump, ramp up the lamp, wait some hours, vent with clean nitrogen.
The small dry turbo system is going to be main cost, the other parts can be cheap, you might also consider putting a UV source in .

Best,

Wim Hagen
EMBL Heidelberg

} On Sep 22, 2015, at 7:59 PM, steven.spurgeon-at-pnnl.gov wrote:
}
}
}
}
} ----------------------------------------------------------------------------
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} Hello everyone,
}
} I’ve been trying to develop a procedure to clean our STEM samples prior to insertion into our ARM200CF microscope. In particular, we are trying to perform highly analytical work that involves long EELS / EDS mapping, so we would like to reduce hydrocarbon contamination on the surface of our samples.
}
} Since most of our specimens are oxide lift outs, they are quite robust to heating and plasma cleaning. Typically after a lift out is completed I will plasma clean for 2-5 minutes prior to insertion; however, someone recently suggested baking our samples for a few hours at 50-100 ÂşC to further reduce contamination. It was also suggested that we place our heater in a bell jar-like setup so that we can pump on the sample during the annealing.
}
} I am considering building such a setup, but I would like to see if anyone has constructed something like this before. I would very much appreciate any design suggestions or other tips to help us clean up our samples.
}
} Thank you!
} ______________________________________
} Steven R. Spurgeon, Ph.D.
} Postdoctoral Research Associate
} Fundamental and Computational Sciences Directorate
}
} Pacific Northwest National Laboratory
} 902 Battelle Boulevard
} P.O. Box 999 MSIN:K8-87
} Richland, WA 99352
}
} Tel: +1-509-371-7123
} steven.spurgeon-at-pnnl.gov
} www.stevenspurgeon.com {http://www.stevenspurgeon.com/}
} www.pnnl.gov {http://www.pnnl.gov/}
}
}
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} 8, 26 -- Subject: Bakeout chamber for cleaning STEM samples
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From: amit.welcomes.u-at-gmail.com
Date: Wed, 23 Sep 2015 23:18:49 -0500
Subject: [Microscopy] Re: Bakeout chamber for cleaning STEM samples

Contents Retrieved from Microscopy Listserver Archives
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HI, I wanted to build a similar system for drying of NMP from my TEM
grids. not sure if it will work for you, i just hooked up a peltier
cooler/heater with an old desktop pc power supply and controlled it
with a mechenical relay, which in turn was controlled by Arduino Uno.
Temp. feedback was provided by LM-35 sensor which i got in Arduino
started kit. Peltier heater and sensor was kept in a vacuum oven which
had few holes drilled to make way for wires then it was sealed with
epoxy reisin. It was the cheapest and quickest way to do it and it can
easily maintain temp of 60 degrees +- 2 degrees. for higher
temperatures and better control you can try better heating coils,
thermocoulples and PID algorithm rest of setup shall remain same.

On Tue, Sep 22, 2015 at 11:30 PM, {steven.spurgeon-at-pnnl.gov} wrote:
}
}
}
} ----------------------------------------------------------------------------
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} ----------------------------------------------------------------------------
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} Hello everyone,
}
} I’ve been trying to develop a procedure to clean our STEM samples prior to insertion into our ARM200CF microscope. In particular, we are trying to perform highly analytical work that involves long EELS / EDS mapping, so we would like to reduce hydrocarbon contamination on the surface of our samples.
}
} Since most of our specimens are oxide lift outs, they are quite robust to heating and plasma cleaning. Typically after a lift out is completed I will plasma clean for 2-5 minutes prior to insertion; however, someone recently suggested baking our samples for a few hours at 50-100 ÂşC to further reduce contamination. It was also suggested that we place our heater in a bell jar-like setup so that we can pump on the sample during the annealing.
}
} I am considering building such a setup, but I would like to see if anyone has constructed something like this before. I would very much appreciate any design suggestions or other tips to help us clean up our samples.
}
} Thank you!
} ______________________________________
} Steven R. Spurgeon, Ph.D.
} Postdoctoral Research Associate
} Fundamental and Computational Sciences Directorate
}
} Pacific Northwest National Laboratory
} 902 Battelle Boulevard
} P.O. Box 999 MSIN:K8-87
} Richland, WA 99352
}
} Tel: +1-509-371-7123
} steven.spurgeon-at-pnnl.gov
} www.stevenspurgeon.com {http://www.stevenspurgeon.com/}
} www.pnnl.gov {http://www.pnnl.gov/}
}
}
} ==============================Original Headers==============================
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From: microscopy.listserver-at-gmail.com
Date: Thu, 24 Sep 2015 07:34:20 -0500
Subject: [Microscopy] viaWWW: Protocol for X-Max (Oxford Instruments, INCA) analysis system

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Email: korneev_dv-at-vector.nsc.ru
Name: Denis Korneev

Organization: SRC VB "Vector", Russia

Title-Subject: [Filtered] A Protocol for X-Max (Oxford Instruments, INCA) analysis system calibration

Message: Hi Colleagues!

We have SEM Zeiss EVO with microanalysis system X-Max (Oxford Instruments, INCA software) and the
etalons for its calibration. But we do not have a protocol for this procedure. We do not have a
warranty or money. How can we do the quantitative calibration? Could anyone to send me a protocol of
calibration?

Thank you!

---------------------
Denis Korneev
senior researcher
SRC VB "Vector"

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From: microscopy.listserver-at-gmail.com
Date: Thu, 24 Sep 2015 07:35:06 -0500
Subject: [Microscopy] viaWWW:Position Available - TEM Senior Microscopist - Adelaide

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Email: angus.netting-at-adelaide.edu.au
Name: Angus Netting

Organization: The University of Adelaide

Title-Subject: [Filtered] Position Available - TEM Senior Microscopist - Adelaide Microscopy

Message: Message: The University of Adelaide, in Adelaide, Australia, is seeking a TEM microscopist
who will be responsible for the management, operation, training and maintenance of the FEI Titan
Themis TEM. A major part of this position is the development of application protocols which allow
users to maximise their use of the instrument.

Term of position: This continuing position is available immediately.

Full position description and instructions on how to apply can be found at:
http://careers.adelaide.edu.au/cw/en/job/493949/tem-senior-microscopist

Enquiries to: Angus Netting
Tel.: +61 8 8313 5855
Email: angus.netting-at-adelaide.edu.au

Closing Date: Open until filled

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From: Edelmare-at-miamioh.edu
Date: Thu, 24 Sep 2015 08:24:23 -0500
Subject: [Microscopy] Has Zeiss North America gone belly up?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Hello one and all,

I apologize for taking up listserv bandwidth but I have a problem. I have
been trying to contact Zeiss Sales about getting an additional camera and software
for one of our Zeiss Axioobserver Z1 light microscopes for the past few weeks. I
have tried multiple contacts (LM, EM, sales, service, admin) and methods including
the general web site sales contact form, all of which has resulted in no success. So
now I am trying the listserv.

At this point I am beginning to wonder if Zeiss is still in business? I get
advertizing emails but can´t any actual response from anyone. Does anyone have
any information of getting a hold of Zeiss these days?

Secondly, I would be happy to hear from other vendors who can provide: a
camera to our Axioobserver Z1 with two side ports. We need to do larger
field-of-view montaging. The main interest is "whole slide" scanning. Our
Axioobserver Z1 is fully motorized (including stage), with Phase, DIC, and
fluorescence. What we are missing is a camera mount\tube, a wide-field color
camera and software to run it.

Thank you


Richard E. Edelmann, Ph.D., Director
Center for Advanced Microscopy & Imaging
9C Upham Hall
Miami University, Oxford, OH 45056
Ph: 513.529.5712 Fax: 513.529.4243
E-mail: edelmare-at-miamioh.edu
http://www.cami.muohio.edu



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From: oshel1pe-at-cmich.edu
Date: Thu, 24 Sep 2015 08:43:16 -0500
Subject: [Microscopy] Re: Has Zeiss North America gone belly up?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Richard,

I don't know about Zeiss North America, but Zeiss has gone back to
dealerships for their light microscopes and confocals.
The dealer for my area is Lukas Microscope, based in Mundelein IL, so
they might cover you as well.
lukasmicroscope.com
(I got contacted by them this summer for the first time, without hearing
anything from our previous Zeiss North Am reps.)

Phil

} Hello one and all,
}
} I apologize for taking up listserv bandwidth but I have a problem. I have
} been trying to contact Zeiss Sales about getting an additional camera and software
} for one of our Zeiss Axioobserver Z1 light microscopes for the past few weeks. I
} have tried multiple contacts (LM, EM, sales, service, admin) and methods including
} the general web site sales contact form, all of which has resulted in no success. So
} now I am trying the listserv.
}
} At this point I am beginning to wonder if Zeiss is still in business? I get
} advertizing emails but can´t any actual response from anyone. Does anyone have
} any information of getting a hold of Zeiss these days?
}
} Secondly, I would be happy to hear from other vendors who can provide: a
} camera to our Axioobserver Z1 with two side ports. We need to do larger
} field-of-view montaging. The main interest is "whole slide" scanning. Our
} Axioobserver Z1 is fully motorized (including stage), with Phase, DIC, and
} fluorescence. What we are missing is a camera mount\tube, a wide-field color
} camera and software to run it.
}
} Thank you
}
}
} Richard E. Edelmann, Ph.D., Director
} Center for Advanced Microscopy& Imaging
} 9C Upham Hall
} Miami University, Oxford, OH 45056
} Ph: 513.529.5712 Fax: 513.529.4243
} E-mail: edelmare-at-miamioh.edu
} http://www.cami.muohio.edu
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: oshel1pe-at-cmich.edu
Date: Thu, 24 Sep 2015 15:51:35 -0500
Subject: [Microscopy] Re: Ask a Microscopist - what math for 8th graders doing microscopy?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings,

You might try contacting McCrone Associates and checking with them about your camera needs and about the status of Zeiss. I am not aware of them having shut down but I am certain that McCrone Associates would know. You can get their contact information from putting their name into a search engine with the work "microscopy" and get their number from there. Again, they may be able to help you with the camera too. I know that they sell Olympus and Nikon instruments but am not sure about Zeiss. Regardless, given their status I think they would be able to tell you what the scoop is.

Sincerely,

James Neal-Kababick
Director
Flora Research Laboratories, LLC
An FDA and DEA Registered & Inspected Laboratory
Fellow AOAC International
President Elect, PSW-AOAC
Vice Chair USP {2251} ADSDDA Expert Panel
United States Pharmacopeia NBDS Expert Committee
USP Joint Standards Setting Subcommittee for Reference Standards (JS3)
Adjunct Faculty Bastyr University
Botanical Medicine Department
1-541-472-0980 phone
jimk-at-floraresearch.com
www.floraresearch.com


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-----Original Message-----
X-from: Edelmare-at-miamioh.edu [mailto:Edelmare-at-miamioh.edu]
Sent: Thursday, September 24, 2015 6:38 AM
To: James Neal-Kababick {jimk-at-floraresearch.com}


Hello one and all,

I apologize for taking up listserv bandwidth but I have a problem. I have been trying to contact Zeiss Sales about getting an additional camera and software for one of our Zeiss Axioobserver Z1 light microscopes for the past few weeks. I have tried multiple contacts (LM, EM, sales, service, admin) and methods including the general web site sales contact form, all of which has resulted in no success. So now I am trying the listserv.

At this point I am beginning to wonder if Zeiss is still in business? I get advertizing emails but can´t any actual response from anyone. Does anyone have any information of getting a hold of Zeiss these days?

Secondly, I would be happy to hear from other vendors who can provide: a camera to our Axioobserver Z1 with two side ports. We need to do larger field-of-view montaging. The main interest is "whole slide" scanning. Our Axioobserver Z1 is fully motorized (including stage), with Phase, DIC, and fluorescence. What we are missing is a camera mount\tube, a wide-field color camera and software to run it.

Thank you


Richard E. Edelmann, Ph.D., Director
Center for Advanced Microscopy & Imaging 9C Upham Hall Miami University, Oxford, OH 45056
Ph: 513.529.5712 Fax: 513.529.4243
E-mail: edelmare-at-miamioh.edu
http://www.cami.muohio.edu



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***************************************************************************************
Forwarded from "Ask a Microscopist"
Please remember that the person asking the question is likely
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I'm assuming this is from an educator. I've already suggested the
Project MICRO website, as well as on-line pages like microscopyu.com and
the molecular expressions microscopy pages, and suggested some playing
with resolution, empty magnification, and what distance does each pixel
on their phone's camera represent when they take a photo of e.g. a mm
ruler. As well as "how big is a human hair?", given that's a standard
measure in the popular press. And doing measurements and stats to
determine that.
But how about some other ideas?

Phil

} Ask a Microscopist
}
}
} The following Ask a Microscopist form submission was received from your website.
}
}
} Name: Timmon Hogan
}
} School: Elko Middle School
}
} Grade/Education Level: Middle School
}
} Location: Richmond, VA US
}
} Email: hogantimmon-at-gmail.com
}
} Subject: analysis
}
} Your Question: What formulas would a 8th grader need to learn more about to practice math involved in microscopy ?
}


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From: bfoster-at-the-mip.com
Date: Thu, 24 Sep 2015 16:34:21 -0500
Subject: [Microscopy] Re: LM Demonstrating the field and aperture

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Well done, Ben. These are such valuable lessons to learn. Your
movie was especially effective.

When we are on the road, we often use a business card for this
demonstration, placed perpendicular to the stage. Also, I have a
piece of screwdriver handle stock (about 1" in diameter), polished on
one end, placed on a slide with a drop of oil under it. In the old
days, we used to use Uraniium glass. I understand that Jerry
Sedgewick (jerry-at-imagingandanalysis.com) has a new supplier, so that
approach may also come back into vogue.

As for "poor man's oblique": Unless one has a condenser with an Abbe
slider, I doubt that any of us could have done better. No apologies
necessary! So here's question to put to your students: What impact
does off-setting the zero order have on resolution?

Good hunting!
Barbara Foster, President & Chief Consultant
Microscopy/Microscopy Education ... "Education, not Training"
7101 Royal Glen Trail, Suite A - McKinney, TX 75070 - P: 972-924-5310
www.MicroscopyEducation.com


NEW! Getting involved in Raman or FTIR?
MME is now offering courses in these areas specifically for microscopists!
Now scheduling courses through the end of 2015. We can customize a
course on nearly any topic, from fluorescence to confocal to image
analysis to SEM/TEM.
Call today for a free training evaluation.

At 10:31 PM 9/23/2015, benjamin.smith-at-ou.edu wrote:



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From: bfoster-at-the-mip.com
Date: Thu, 24 Sep 2015 17:04:42 -0500
Subject: [Microscopy] Re: Has Zeiss North America gone belly up?

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Dear Dr. Edelmare,

I spent considerable time with the Zeiss folks at M&M early last month and found them to be very much alive and very responsive to customers, so was surprised to hear about your problems. I've forwarded your note to them, with the hope that they will get in touch with you soon.

Hope this was helpful,

Best regards,
Barbara Foster, President & Chief Consultant
Microscopy/Microscopy Education ... "Education, not Training"
7101 Royal Glen Trail, Suite A - McKinney, TX 75070 - P: 972-924-5310
www.MicroscopyEducation.com


NEW! Getting involved in Raman or FTIR?
MME is now offering courses in these areas specifically for microscopists!
Now scheduling courses through the end of 2015. We can customize a course on nearly any topic, from fluorescence to confocal to image analysis to SEM/TEM.
Call today for a free training evaluation.

At 12:20 PM 9/24/2015, Edelmare-at-miamioh.edu wrote:



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From: microscopy.gmb-at-gmail.com
Date: Thu, Sep 24, 2015 at 4:07 PM
Subject: [Microscopy] Re: Ask a Microscopist - what math for 8th

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Phil,

I think the concept of optical resolution, instead of magnification,
is important to any imaging device from a cell phone to TEM.

r = 1.22 lambda/2nsin theta = 0.61 x lambda/NA

where
r = minimum distance between resolvable points
lambda = wavelength of light
n = refractive index of the media
theta = the half angle of the pencil of light that enters
the objective
NA = the numerical aperture

Here, the concept of numerical aperture or light gathering capability
of the lens is a important and easy for most middle-school kids to
understand if properly taught. It doesn't take long before one can
understand the important of NA when buying binoculars, and certainly
using a microscope.

The concepts of resolution and empty magnification are key. Using
Photoshop, I have enlarged portions of images of different resolution
to illustrate the effect of spatial resolution on image quality, then
going on to explain how to optimize resolution and contrast.

Best regards,

Gary Brown
Polymer Microscopy Consultant


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I'm assuming this is from an educator. I've already suggested the
Project MICRO website, as well as on-line pages like microscopyu.com and
the molecular expressions microscopy pages, and suggested some playing
with resolution, empty magnification, and what distance does each pixel
on their phone's camera represent when they take a photo of e.g. a mm
ruler. As well as "how big is a human hair?", given that's a standard
measure in the popular press. And doing measurements and stats to
determine that.
But how about some other ideas?

Phil

} Ask a Microscopist
}
}
} The following Ask a Microscopist form submission was received from your website.
}
}
} Name: Timmon Hogan
}
} School: Elko Middle School
}
} Grade/Education Level: Middle School
}
} Location: Richmond, VA US
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} Email: hogantimmon-at-gmail.com
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} Subject: analysis
}
} Your Question: What formulas would a 8th grader need to learn more about to practice math involved in microscopy ?
}


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From: oshel1pe-at-cmich.edu
Date: Fri, 25 Sep 2015 07:05:57 -0500
Subject: [Microscopy] e: Re: Ask a Microscopist - what math for 8th graders

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Folks,

Please send your comments on "what math for 8th graders doing
microscopy?" to the person who asked the question:
hogantimmon-at-gmail.com

Not me.

Phil
--
Philip Oshel
Microscopy Society of America
Ask a Microscopist
http://www.microscopy.org/microscopy/ask.cfm


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From: microscopy.listserver-at-gmail.com
Date: Fri, 25 Sep 2015 07:07:38 -0500
Subject: [Microscopy] viaWWW:EM Lab manager position available, Naval Research Lab,

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Email: rhonda.stroud-at-nrl.navy.mil
Name: Rhonda Stroud

Organization: Naval Research Laboratory

Title-Subject: [Filtered] EM Lab manager position available, Naval Research Lab, Washington DC

Message:
If we say, "I can name that atom in 10 seconds," do you say, "I bet I can do it in 5,"?

The NRL Nanoscale Materials Section in the Materials Science and Technology Division of the Naval
Research Lab seeks an electron microscopy lab manager who will take pride in ensuring world-class,
DoD-leading performance of section microscopes to enable next generation materials
development. Primary responsibilities will be to assist in on-going research projects, and
day-to-day maintenance of and user training on a Nion UltraSTEM 200 with single-atom-sensitivity
EDS, and a JEOL 2200FS FEG S/TEM with in situ electrical, and electrochemical cell holders.
Secondary responsibilities will include technique development for sample preparation, analysis and
patterning with a fully-accessorized FEI Helios G3 focused ion beam microscope in the NRL Institute
for Nanoscience. Necessary qualifications include US
citizenship,and a Ph.D. in physics, materials science or related field, or bachelors degree and a
minimum of 5 years work experience in transmission electron microscopy in a research environment.
Skill in the operation of an aberration-corrected STEM is required; experience in UHV
STEM operation preferred. Demonstrated experience in automation through scripting/coding on at least
one platform is also required, e.g., Digital Micrograph, MatLab, JEM Tool Box, Python or Avizo.

The Naval Research Lab is a civilian-staffed, federally-funded research lab with a mission to
promote national security through world-leading basic scientific research. The Nanoscale Materials
Section conducts cross-disciplinary, collaborative studies of nanomaterials ranging from DNA origami
to core-shell quantum dots to interstellar dust.

Questions regarding the position and CV's from potential applicants can be emailed to:
rhonda.stroud-at-nrl.navy.mil

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From: microscopy.listserver-at-gmail.com
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Subject: [Microscopy] viaWWW:

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Email: cgoldsmith-at-cdc.gov
Name: Cynthia Goldsmith

Organization: CDC

Title-Subject: [Filtered] Suggestions for books to be reviewed for Microscopy and Microanalysis journal

Message: Hello,

I am the Book Review Editor for the journal Microscopy and Microanalysis. I am looking for
recommendations of books that that were recently published or will be published in the near future
that would be of interest to our readership. If accepted, we would find someone to review these
books. Please reply to me offline at cgoldsmith-at-cdc.gov.

Thank you for your help.

Cynthia

Cynthia S. Goldsmith, MGS
Book Review Editor, Microscopy and Microanalysis

Infectious Diseases Pathology Branch
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From: microscopy.listserver-at-gmail.com
Date: Fri, 25 Sep 2015 07:09:14 -0500
Subject: [Microscopy] viaWWW:

Contents Retrieved from Microscopy Listserver Archives
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Email: cbuser125-at-gmail.com
Name: Chris

Title-Subject: [Filtered] JEOL 1400 TEM stage problem

Message: Hi everyone,

I have a weird problem with a JEOL 1400 I’m using, which is not under service contract. The stage
can only be moved toward the center on both axes using the trackball or the XY buttons. This works
from any sector, meaning the stage trackball / buttons / motors are able to move in all directions,
but only toward the center.
To come to a position farther to the edge, you have to shoot the stage over diagonally to the
opposing quadrant, and then shoot back to the original quadrant on a position farther out. You can’t
shoot away from the middle in the same quadrant either. So it’s like you have to “reset” the stage
by crossing to the other side with the fast “shoot” function. I’ve also been told that it used to
work again after a power failure and then went back to not working after a week or so.

Does anyone have an idea where the problem could be and how to trouble shoot it?

Thanks,
Chris


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From: microscopy.listserver-at-gmail.com
Date: Fri, 25 Sep 2015 07:10:05 -0500
Subject: [Microscopy] viaWWW:JEOL 1400 TEM stage problem

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


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Email: cbuser125-at-gmail.com
Name: Chris

Title-Subject: [Filtered] JEOL 1400 TEM stage problem

Message: Hi everyone,

I have a weird problem with a JEOL 1400 I’m using, which is not under service contract. The stage
can only be moved toward the center on both axes using the trackball or the XY buttons. This works
from any sector, meaning the stage trackball / buttons / motors are able to move in all directions,
but only toward the center.
To come to a position farther to the edge, you have to shoot the stage over diagonally to the
opposing quadrant, and then shoot back to the original quadrant on a position farther out. You can’t
shoot away from the middle in the same quadrant either. So it’s like you have to “reset” the stage
by crossing to the other side with the fast “shoot” function. I’ve also been told that it used to
work again after a power failure and then went back to not working after a week or so.

Does anyone have an idea where the problem could be and how to trouble shoot it?

Thanks,
Chris


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From: microscopy.listserver-at-gmail.com
Date: Fri, 25 Sep 2015 07:11:05 -0500
Subject: [Microscopy] viaWWW:Bio IT Image specialist position

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

X-from: chris.guerin-at-irc.vib-ugent.be

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Email: chris.guerin-at-irc.vib-ugent.be
Name: Chris Guerin

Organization: VIB Bio Imaging Core

Title-Subject: [Filtered] Bio IT Image specialist position

Message: Hi Everyone:

There is an opening for an Bio IT image specialist in Ghent Belgium. The details are as follows

VIB is looking to expand its Institute-wide bioinformatics platform, BITS, with a specialist in
biological imaging IT to provide image analyses and setup of new computing capabilities in advanced
microscopy. We are looking for a dedicated individual to join the BITS team who will jointly work
together in projects for the VIB Bio Imaging Core in Ghent and Leuven
(https://corefacilities.vib.be/bic) as well as the Discovery Sciences platform in Leuven.

Ideally the candidate has outstanding communication skills to establish a close working relationship
with researchers and with staff of the imaging core facilities. The goal of this partnership is to
make sure that imaging experiments are planned, designed and performed in a way that the data
produced is suitable for subsequent image processing and image analysis. BITS will also interact
with computer vision scientists in other research groups working on specialized image analysis
problems. This close relationship will allow the integration of cutting-edge image analysis
solutions into the service portfolio.

Responsibilities include:

Help scientists rapidly design and build successful image analysis pipelines and data flows
using a variety of open-source and commercial software packages as well as writing custom code and
tools when necessary.
Develop and coordinate new regional and (inter)national collaboration between BITS, the Bio
Imaging Core and other field experts (e.g. iMinds).
Coordinate and network all the different and currently distributed image analysis resources of
the cores.
Assist in training students and staff in image analysis and allowable image manipulation methods.
Provide an interface between BITS, the departmental ITs, and the Bio Imaging Core.
Assist the cores in data organization, analysis and archiving. Develop a method of data
consolidation where essential data is safeguarded, and non-essential or duplicative data is not
taking up valuable archive space.
Develop an image data mining resource for VIB and beyond. Organize, administer and help promote
a VIB repository of data that can be accessed by different VIB research groups and for additional
use by other academic centers.
Collaborate with the researchers to develop and implement algorithms that solve particular
image processing problems from cell and developmental biology.

The candidate will split his/her time between the Ghent, Leuven core facilities and Discovery
Sciences and may also be required to travel to other VIB sites in Brussels and Antwerp. More
information on the BITS and the VIB Bio Imaging Cores can be found at https://www.bits.vib.be and
https://corefacilities.vib.be/bic
Profile

​The candidate must have an advanced academic degree or equivalent experience and the
following skills:

Extensive background in image analysis, algorithm development and statistical analysis of
image-based data.
Knowledge of microscopy and tissue/cell morphology would be an advantage but is not essential.
Knowledge of Image J/FIJI, Imaris, Volocity, IMOD, Amira, Ilastik or Reconstruct would be an
advantage.

All applications must be through the VIB Jobs webpages:
http://www.vib.be/en/jobs/Pages/Biological-Image-IT-Specialist.aspx.

Informal enquiries can be sent to chris.guerin-at-irc.vib-ugent.be

Best,

Chris


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From: Edelmare-at-miamioh.edu
Date: Fri, 25 Sep 2015 08:50:22 -0500
Subject: [Microscopy] Zeiss does still exist.

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html



I wish to thank one and all for comments and contacts with my our issue of getting a
hold of Zeiss. Zeiss has contacted me and hopefully we can continue to improve
communications here in the Midwest. I received some honestly concerned
responses from Zeiss reps in the Northeast, Texas, and Arizona and I thank you.

The responses show and remind us we are a true community of both users and
vendors, and our community is at its best when we remember that, and we work
together. We each have our own priorities but should not be incompatible and
should never divide us. As we have seen on this listserv in the past an "Us vs
Them" attitude is not helpful. Like a true community we do need to discuss and
share events and issues. Not just at the once a year block party that is the M&M
meeting, but in open discussions on this listserv.

Both users and vendors always need to remember that we are partners, and if it
wasn´t for the other, neither of us would be here.

Have a great weekend.


Richard E. Edelmann, Ph.D., Director
Center for Advanced Microscopy & Imaging
9C Upham Hall
Miami University, Oxford, OH 45056
Ph: 513.529.5712 Fax: 513.529.4243
E-mail: edelmare-at-miamioh.edu
http://www.cami.muohio.edu



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From: DusevichV-at-umkc.edu
Date: Fri, 25 Sep 2015 09:38:06 -0500
Subject: [Microscopy] Zeiss does still exist.

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I am sorry, I cannot find "like" button...

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Director
(816) 235-2072
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

-----Original Message-----
X-from: Edelmare-at-miamioh.edu [mailto:Edelmare-at-miamioh.edu]
Sent: Friday, September 25, 2015 8:51 AM
To: Dusevich, Vladimir



I wish to thank one and all for comments and contacts with my our issue of getting a hold of Zeiss. Zeiss has contacted me and hopefully we can continue to improve communications here in the Midwest. I received some honestly concerned responses from Zeiss reps in the Northeast, Texas, and Arizona and I thank you.

The responses show and remind us we are a true community of both users and vendors, and our community is at its best when we remember that, and we work together. We each have our own priorities but should not be incompatible and should never divide us. As we have seen on this listserv in the past an "Us vs Them" attitude is not helpful. Like a true community we do need to discuss and share events and issues. Not just at the once a year block party that is the M&M meeting, but in open discussions on this listserv.

Both users and vendors always need to remember that we are partners, and if it wasn´t for the other, neither of us would be here.

Have a great weekend.


Richard E. Edelmann, Ph.D., Director
Center for Advanced Microscopy & Imaging 9C Upham Hall Miami University, Oxford, OH 45056
Ph: 513.529.5712 Fax: 513.529.4243
E-mail: edelmare-at-miamioh.edu
http://www.cami.muohio.edu



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From: Kyoung.Jo-at-rockets.utoledo.edu
Date: Fri, 25 Sep 2015 10:50:23 -0500
Subject: [Microscopy] Does anyone know how to perform CLEM for tissue samples ?

Contents Retrieved from Microscopy Listserver Archives
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Dear Microscopists

Hello, everyone. I am attempting Correlative Light and Electron Microscopy (CLEM) for the first time. I am having trouble making tissue samples using 0.2% UA and embedding in Lowicryl. When i section, the tissue is getting crumbled and sections are not stable on the grids. After imaging the grids on the LM, the sections fall off from the grids. Therefore i can't not perform traditional poststaining with UA and LC.

Please help me if you have any tips on CLEM procedures for tissue samples

Thank you

Sincerely,

Jo

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From: microscopy.listserver-at-gmail.com
Date: Sat, 26 Sep 2015 09:57:40 -0500
Subject: [Microscopy] viaWWW:EM Lab manager position available, Naval Research Lab,

Contents Retrieved from Microscopy Listserver Archives
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Email: rhonda.stroud-at-nrl.navy.mil
Name: Rhonda Stroud

Organization: Naval Research Laboratory

Title-Subject: [Filtered] EM Lab manager position available, Naval Research Lab, Washington DC

Message:
If we say, "I can name that atom in 10 seconds," do you say, "I bet I can do it in 5,"?

The NRL Nanoscale Materials Section in the Materials Science and Technology Division of the Naval
Research Lab seeks an electron microscopy lab manager who will take pride in ensuring world-class,
DoD-leading performance of section microscopes to enable next generation materials
development. Primary responsibilities will be to assist in on-going research projects, and
day-to-day maintenance of and user training on a Nion UltraSTEM 200 with single-atom-sensitivity
EDS, and a JEOL 2200FS FEG S/TEM with in situ electrical, and electrochemical cell holders.
Secondary responsibilities will include technique development for sample preparation, analysis and
patterning with a fully-accessorized FEI Helios G3 focused ion beam microscope in the NRL Institute
for Nanoscience. Necessary qualifications include US
citizenship,and a Ph.D. in physics, materials science or related field, or bachelors degree and a
minimum of 5 years work experience in transmission electron microscopy in a research environment.
Skill in the operation of an aberration-corrected STEM is required; experience in UHV
STEM operation preferred. Demonstrated experience in automation through scripting/coding on at least
one platform is also required, e.g., Digital Micrograph, MatLab, JEM Tool Box, Python or Avizo.

The Naval Research Lab is a civilian-staffed, federally-funded research lab with a mission to
promote national security through world-leading basic scientific research. The Nanoscale Materials
Section conducts cross-disciplinary, collaborative studies of nanomaterials ranging from DNA origami
to core-shell quantum dots to interstellar dust.

Questions regarding the position and CV's from potential applicants can be emailed to:
rhonda.stroud-at-nrl.navy.mil

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From: jacques.faerber-at-ipcms.u-strasbg.fr
Date: Mon, 28 Sep 2015 05:08:45 -0500
Subject: [Microscopy] Microanalysis on SEM : 2 SDD configuration, advices

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi all

As we are in the job for buying a new SEM with SDD, I come to the
comunity with a few questions.
Today I've a first question for the microanalysis experts :

There was a serie of interesting posts a few month ago about the
accurracy of standardless microanalysis results (pointing in particular
to a very usefull recent paper from D. Newbury and N. Ritchie ), and
from my little experience, I agree in most what has been told.
But in a material science and catalysis lab, there are much, much
samples which cannot been polished, what is needed to do accurate
quatitative analysis with standards.

Now, manufacturers propose configurations with 2 SDD detectors,
positionned at ~90° one to the other. They claim it is usefull to get
more signal with the same energy/current conditions (what is obvious),
but too that this allows to cancel "more or less" the effect of the
roughness on non-polished samples (I've added the "more or less".
Vendors are much more optimistic).
Of coarse, it will depend on the amplitude and shape of the roughness.
But what else ? What are the traps and limits of such a configuration.

I'm interested to hear feedbacks and advices about the real interest of
such a configuration, and about the reality of that cancelling effect.
More ? Or less ? ;-)

Thanks

Jacques

--

J. Faerber
IPCMS-DSI
Institut de Physique et Chimie des MatĂŠriaux de Strasbourg
DĂŠpartement Surfaces et Interfaces
23, rue de Loess ; BP43
67034 Strasbourg CEDEX 2
France

Tel 00 33(0)3 88 10 71 01
Fax 00 33(0)3 88 10 72 48
E-mail : Jacques.Faerber-at-ipcms.unistra.fr


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11, 25 -- From: jacques faerber {jacques.faerber-at-ipcms.u-strasbg.fr}
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From: eikonika-at-otenet.gr
Date: Mon, 28 Sep 2015 09:10:08 -0500
Subject: [Microscopy] broken diffusion pump heater in Jeol JSM5600-LV

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello All
The diffusion pump heater of our Jeol JSM5600-LV broke and we are trying to
find a replacement. It is a 100V, 600W, 10.5 cm external diameter plate. I
cannot see any label indicating which model of diffusion pump this Jeol
scope uses. Will be thankful for any information about the type of pump and
where to find this part, new or used.
With best regards

yorgos

Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
************************************


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From: microscopy.listserver-at-gmail.com
Date: Tue, 29 Sep 2015 08:03:08 -0500
Subject: [Microscopy] viaWWW:CMMS Fall Meeting

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Jacques,

Using 2 SDDs will help significantly but it will not eliminate the problem of surface roughness. You can look at two cases:

1) A perfectly polished sample, with the detectors at the same take-off angle and otherwise identical. Then they should see the same signal.

2) The side of a wall where the beam hits many microns below the top corner. In this case only one detector sees the signal, and the other will see none. Your ZAF correction will fail.

Realistic samples will be in between. So it is crucial to know what the scale of your sample roughness and approximate composition is. For example, consider an Fe-Ni alloy and the beam is hitting where the surface slopes by 10 degrees. In the Fe-Ni system, the Fe absorbs the Ni signal heavily and leads to big errors. I input 50 counts for each element into my software and then let it apply k-factors and a thin film correction (this is for TEM actually, but it will still give you a correct feel for the effect). This is a rough calculation so I assume a density of 10 g/cc (ballpark), a 30 degree takeoff and a micron thick film. With a 10 degree slope on the surface, one detector will see 20 degrees, and the other 40 degrees. The computed atomic percents are then:

20 deg takeoff
Fe 45.8 at%
Ni 54.2 at%

30 deg
Fe 47.1
Ni 52.9

40 deg
Fe 47.7
Ni 52.3

Relative error for one detector:
abs(40deg - 30deg) / 30deg
Fe 1%
Ni 1%

Relative error for the other detector:
abs(20deg - 30deg) / 30deg
Fe 2.5%
Ni 2.7%

(40deg + 20deg) / 2 / 30deg:
Fe 0.8% error
Ni 0.6% error relative

So if we assume your detector is at 30 degrees, the error one way or the other is a couple percent. But the average of them produces less than one percent error. So you see it helps quite a bit but doesn’t eliminate the problem. As you can see, this is also very, very, very, morphology and composition dependent. I suggest you play around with it some using several materials and roughnesses you expect and get a feel for it.

I used my own software in this example called Stoichiometry Fitter, it is open source and free to use: https://github.com/ZGainsforth/StoichiometryFitter

Also, CASINO is superb for visualizing this stuff: http://www.gel.usherbrooke.ca/casino/What.html

I hope this helps,

Zack



} On Sep 28, 2015, at 3:24 AM, jacques.faerber-at-ipcms.u-strasbg.fr wrote:
}
}
}
}
} ----------------------------------------------------------------------------
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of America
} To Subscribe/Unsubscribe -- http://www.microscopy.com/MicroscopyListserver
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
} ----------------------------------------------------------------------------
}
} Hi all
}
} As we are in the job for buying a new SEM with SDD, I come to the
} comunity with a few questions.
} Today I've a first question for the microanalysis experts :
}
} There was a serie of interesting posts a few month ago about the
} accurracy of standardless microanalysis results (pointing in particular
} to a very usefull recent paper from D. Newbury and N. Ritchie ), and
} from my little experience, I agree in most what has been told.
} But in a material science and catalysis lab, there are much, much
} samples which cannot been polished, what is needed to do accurate
} quatitative analysis with standards.
}
} Now, manufacturers propose configurations with 2 SDD detectors,
} positionned at ~90° one to the other. They claim it is usefull to get
} more signal with the same energy/current conditions (what is obvious),
} but too that this allows to cancel "more or less" the effect of the
} roughness on non-polished samples (I've added the "more or less".
} Vendors are much more optimistic).
} Of coarse, it will depend on the amplitude and shape of the roughness.
} But what else ? What are the traps and limits of such a configuration.
}
} I'm interested to hear feedbacks and advices about the real interest of
} such a configuration, and about the reality of that cancelling effect.
} More ? Or less ? ;-)
}
} Thanks
}
} Jacques
}
} --
}
} J. Faerber
} IPCMS-DSI
} Institut de Physique et Chimie des MatĂŠriaux de Strasbourg
} DĂŠpartement Surfaces et Interfaces
} 23, rue de Loess ; BP43
} 67034 Strasbourg CEDEX 2
} France
}
} Tel 00 33(0)3 88 10 71 01
} Fax 00 33(0)3 88 10 72 48
} E-mail : Jacques.Faerber-at-ipcms.unistra.fr
}
}
} ==============================Original Headers==============================
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From ohn.bullocknewseygot-at-gmail.com Tue Sep 29 04:21:59 2015
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Email: meetings-at-csmicroscopy.org
Name: Cam Robinson

Organization: Chesapeake Microscopy and Microanalysis Society

Title-Subject: [Filtered] CMMS Fall Meeting

Message: Dear Friends & Colleagues,

The Chesapeake Microscopy & Microanalysis Society (CMMS) is pleased to announce our fall meeting to
be held on October 13th from 4pm at the George Washington University in Washington, DC. There will
be a tour of George Washington's new Nanofabrication and Imaging Center and dinner will be served.

Dr. Davi Bock (HHMI Janelia Research Campus) will be presenting the evenings talk entitled "Neuronal
networks from large-scale electron microscopy of Drosophila".

Full meeting details and links to registration are available on the
Society's website: http://csmicroscopy.org

The deadline for registration is October 8th.

Look forward to seeing you at the meeting!

Cam Robinson
President, CMMS
meetings-at-csmicroscopy.org

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From: kb-at-notahelix.net
Date: Tue, 29 Sep 2015 13:05:36 -0500
Subject: [Microscopy] Need microscopist skilled in TEM exam of single- and double-stranded DNA

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I need the services of a TEM microscopist skilled in the visualization of
DNA, especially with respect to distinguishing between single-stranded and
double-stranded forms. Incredibly, I am finding that almost no one knows
how to do this anymore. Of the ~20 people/facilities I've contacted, no one
even knows what the terms "hyperphase" and "hypophase" mean. If anyone at
Microscopy ListServer knows how to perform EM studies of DNA, or can steer
me to someone who does, I would be very grateful.

Ken Biegeleisen, MD, PhD

kb-at-notahelix.net
https://notahelix.net




==============================Original Headers==============================
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From: les-at-zsgenetics.com
Date: Tue, 29 Sep 2015 13:26:23 -0500
Subject: [Microscopy] Need microscopist skilled in TEM exam of single- and

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

I might be able to help you out Ken. I've cooked up a couple of hyperphases
myself. Give me a buzz.


Best Regards,
Larry Scipioni
--
Larry Scipioni, PhD
Vice President of R&D - Platform Development
ZS Genetics
les-at-zsgenetics.com
781-552-1989 (mobile)
larry.scipioni (Skype)
www.zsgenetics.com




-----Original Message-----
X-from: kb-at-notahelix.net [mailto:kb-at-notahelix.net]
Sent: Tuesday, September 29, 2015 2:21 PM
To: LES-at-ZSGENETICS.COM

I need the services of a TEM microscopist skilled in the visualization of
DNA, especially with respect to distinguishing between single-stranded and
double-stranded forms. Incredibly, I am finding that almost no one knows
how to do this anymore. Of the ~20 people/facilities I've contacted, no one
even knows what the terms "hyperphase" and "hypophase" mean. If anyone at
Microscopy ListServer knows how to perform EM studies of DNA, or can steer
me to someone who does, I would be very grateful.

Ken Biegeleisen, MD, PhD

kb-at-notahelix.net
https://notahelix.net




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From: mdelann1-at-jhmi.edu
Date: Thu, 1 Oct 2015 10:09:14 -0500
Subject: [Microscopy] viaWWW:preparing Lowicryl K4M or HM20

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Name: Chris Brantner

Organization: George Washington University Nanofabrication and Imaging Center

Title-Subject: [Filtered] preparing Lowicryl K4M or HM20

Message: Good afternoon all,

I need to prepare some Lowicryl. I am leaning towards K4M. I have never
done this. Can someone give me a few pointers? The recipe says a brown
glass container. But these are pricey containers to purchase for mixing up
resin. I would like to use this in my freeze substitution device on some
heart tissue for immunolabeling. If I am using ethanol in my resin
mixtures, should I use ethanol in my substitution medium instead of acetone?

Thank you
Chris

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From mike.sfsd4f564s6df45dszqzuu-at-gmail.com Wed Sep 30 19:23:39 2015
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Message-ID: {52B308F6.DD6D53AD-at-gmail.com}

Chris,
I have used Lowicryl K4M, LR White and Gold and HM20). I have found
HM20 to be superior in: Infiltration, preparation, sectioning and
immuno-labelling. I would recommend it over the others, you can make it up
in a glass scintillation vial (mixing with light N2 bubbling). I have also
found that acetone is the best solvent for IEM, I have tried both methanol
and ethanol-too much extraction. We have done the HPF hybrid technique
(light pre-fixation in phosphate buffered paraformaldehyde-rinse-HPF in
hexadecene-LN2 storage), followed by AFS.
Quickly my protocol is AFS in IEM cocktail (0.2% GA, 0.2% UA in 95%
Acetone (5% D-H20) at -90C. This is followed by gradual increase (slope 5
degrees/hr) to -45C, then held there for solvent rinse (3 x 10 min pure
Acetone) followed by 50% then 75% HM20 in Acetone. After and overnight in
pure HM20, I change to fresh resin once (2hrs) then again right before UV
illumination. Sections are picked up on formvar coated nickel or slot grids
and immuno-labeled by floating on drops of: NH4Cl, block, primarly Aby
overnight 4c, TBS rinse, Au conjugated secondary Aby (2 hrs RT), rinse, hard
GA fix, rinse, UA stain rinse and dry. No first Aby sections followed by
secondary Aby serves as negative control. The key is to make sure the
tissue blocks are small and fit into the planchets, we usually use two 300
um depth planchets filled with 1.2 ul of hexadecene. When sectioning, due
to the fact that a good freeze is within a 200 um depth of the tissue, we
concentrate on the periphery of the tissue, not the middle.
I hope this helps,
Sincerely,
Michael Delannoy

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Name: Chris Brantner

Organization: George Washington University Nanofabrication and Imaging
Center

Title-Subject: [Filtered] preparing Lowicryl K4M or HM20

Message: Good afternoon all,

I need to prepare some Lowicryl. I am leaning towards K4M. I have never
done this. Can someone give me a few pointers? The recipe says a brown
glass container. But these are pricey containers to purchase for mixing up
resin. I would like to use this in my freeze substitution device on some
heart tissue for immunolabeling. If I am using ethanol in my resin
mixtures, should I use ethanol in my substitution medium instead of acetone?

Thank you
Chris

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From: microscopy.listserver-at-gmail.com
Date: Thu, 1 Oct 2015 16:31:25 -0500
Subject: [Microscopy] viaWWW:vacuum oven reccomendation needed

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Title-Subject: [Filtered] vacuum oven reccomendation needed

Message: Mine died, I'm amazed that even small ones are $3,000.
All I need is for it to bake EMbed 812.

Any cheaper suggestions are welcomed!

thanks

Joe


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From: improve.alexa.ranks-at-gmail.com
Date: 03 Oct 2015 10:52:39 +0300
Subject: re: Get your Alexa Rank to top

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Dear Listers,
Back on Sept. 14 I posted a question about how to explain to researchers the difficulty of quantifying autophagosomes seen in electron micrographs and I have requests to post a summary of replies.
This is the original question I posted:
"I'm getting an increase in researchers coming to me wanting to see autophagosomes (the last few years it seems that autophagy is becoming quite a popular topic). Getting images of autophagosomes is not a problem. The problem I am having with researchers, is getting them to understand that you cannot quantify the presence of the autophagosomes by simply counting the ones you see in a few sections. When I try to explain about stereology methods we could use to quantify the autophagosomes I lose them, in addition I keep getting presented with papers they have read in which the quantitative methods being used are clearly wrong. I would like to hear from others who are dealing with similar requests and how are you handling these requests. In particular anyone who is involved in quantifying autophagosomes by using TEM. As always thanks in advance, all help is appreciated."

The short answer is I am obviously not alone in trying to explain to researchers you simply can't count individual autophagosomes in one or two sections and say you have statistically quantifiable results. I understand that it is proper etiquette not to post individual's names, so I will provide a few of the comments I received without attribution.

"You can lead a horse to water, but you cannot make him drink. I've had the same experience and I'm losing the battle."

"I feel your pain. We don't have a solution."

"I had the same problem and when we tried to tell them of the bad math they would not believe us "because it was published "."

Basically, all of the responses were along the same vein as the above quotes. My thanks to everyone and especially to the authors of the above quotes. Following are a couple of quotes with useful tips.
"One suggestion for you that has helped me is assembling a brief PowerPoint that you put into a PDF format and share with the folks approaching you which succinctly illustrates the issue and the need for another approach. This way, you don't have to keep explaining the same thing repeatedly to folks. "
This I am going to do.

"I think that once they have a good label for confocal Microscopy all could be counted in a number of cells in different cell populations. That's what's needed for statistics. "
The above point is valid, but only for cell cultures examined in by Confocal. Still leaves us with the problem of sections of tissues.
Also, I was asked to share what I have done. I do have some experience with stereology. I was fortunate to be able to attend the 8th ISS American Stereology Course in 2004 in Minneapolis. If you have the opportunity to attend one of these, do so. The individual who organized this one is an expert in stereology, if you wish to contact this individual, please contact me privately and I will pass your request on to that individual. In addition I have a well worn copy of "Unbiased Stereology, Three Dimensional Measurement in Microscopy" by C. V. Howard and M. G. Reed. If you want to learn some stereology on your own this is the book to buy.
The project that prompted my original question, was not well suited for an attempt at quantification. I have another researcher with a project whose sample will be well suited for an attempt at quantification of autophagosomes. For this one I will be using one of the number estimation techniques detailed in chapter 5 of Howard and Reed's textbook. Which will estimate numerical density in relation to the reference volume.
I hope this summary has adequately addressed people's requests for feedback.


Tom Bargar
UNMC
Electron Microscopy Core Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu


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Subject: [Microscopy] viaWWW:Northern California Society for Microscopy Meeting

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From: conversion.seo-at-gmail.com
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Subject: Grouw your business with us

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From: microscopy.listserver-at-gmail.com
Date: Mon, 5 Oct 2015 18:13:46 -0500
Subject: [Microscopy] =?UTF-8?Q?viaWWW:Help_working_with_a_Millicell=c2=ae_Hanging_Membra?=

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Title-Subject: [Filtered] Help working with a MillicellŽ Hanging Membrane Inserts

Message: Does anyone out there have experience working with the membrane of the MillicellŽ Cell
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From: microscopy.listserver-at-gmail.com
Date: Mon, 5 Oct 2015 18:14:50 -0500
Subject: [Microscopy] viaWWW:SEM of leather

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Email: joseph.uknalis-at-ars.usda.gov
Name: Joe Uknalis

Organization: USDA -ERRC

Title-Subject: [Filtered] SEM of leather

Message:
I'm looking for suggestions on how to prepare leather for SEM viewing. (tanned & untanned, tanned is
worse for charging) Currently I slice a cross section by hand as thin as possible. Mount with a
small dab of Duco cement, and silver paint the edges. (Tried mounting with a dab of silver paint-
not much improvement).

The corium takes gold coating reasonably well but the grain seems to be resistant to all but LONG
sputter coating. I get charging at higher magnifications.

Would a different metal coating do better?
Perfuse some conductive material into the sample? tho that might disturb structure.

thanks

Joe

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From: protrain-at-emcourses.com
Date: Tue, 6 Oct 2015 04:38:38 -0500
Subject: [Microscopy] RE: viaWWW:SEM of leather

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Joe

My first question would be what accelerating voltage are you using, and what
spot size when compared with your normal operating conditions? With this
information we may move forward.

Come back to me.

Steve

Steve Chapman FRMS
Protrain for Consultancy and Training in Electron Microscopy
+44 (0)7711 606967
web www.emcourses.com

----------------------------------------------------------------------------
-----------------------------------------------
Email: joseph.uknalis-at-ars.usda.gov
Name: Joe Uknalis

Organization: USDA -ERRC

Title-Subject: [Filtered] SEM of leather

Message:
I'm looking for suggestions on how to prepare leather for SEM viewing.
(tanned & untanned, tanned is
worse for charging) Currently I slice a cross section by hand as thin as
possible. Mount with a
small dab of Duco cement, and silver paint the edges. (Tried mounting with a
dab of silver paint- not much improvement).

The corium takes gold coating reasonably well but the grain seems to be
resistant to all but LONG sputter coating. I get charging at higher
magnifications.

Would a different metal coating do better?
Perfuse some conductive material into the sample? tho that might disturb
structure.

thanks

Joe

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From: dsherman-at-purdue.edu
Date: Tue, 6 Oct 2015 08:12:18 -0500
Subject: [Microscopy] pepper in membrane pellets

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi All,

We have all seen łpepper˛ at some time in our careers and usually it can
be attributed to incomplete washing of samples after glutaraldehyde
fixation and before osmium, staining problems, and lots of unknowns. I
have some recent samples that exhibited
small black dots of similar size throughout an isolated membrane
preparation. The dots are visible prior to staining so staining can be
ruled out. The background resin is always clean.

The sample pellets were fixed with fresh glutaraldehyde in Sorensonšs
phosphate buffer washed repeatedly and then post fixed in osmium,
resuspended in each solution change. Percentages were same as I have used
for 40 years. Pellets were agarose enrobed
and resultant material cut into blocks prior to dehydration in ETOH
series followed by propylene oxide and EPON generic embedding.

Nothing out of routine was done. However, the samples were prepared using
a Percoll gradient. Is it possible that some of the Percoll was attached
to the membranes and gave the dark spots that lined the membranes? It
consists of colloidal silica particles
coated with polyvinylpyrrolidone (PVP). I have little experience with
Percoll having primarily done pellets purified through sucrose gradients
in the past. If it is Percoll that attaches to the membranes, is there
any way to efficiently wash it off?

Any ideas or suggestions?

Debby



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From: lamiller-at-illinois.edu
Date: Tue, 6 Oct 2015 08:18:46 -0500
Subject: [Microscopy] Deadlines approaching for the U of Illinois MRL Fall Bio Conference

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Greetings,

We invite everyone to come and join us for a day of lectures by top in their field scientists, a student competition, vendor fair and food, November 4th at the U of Illinois Urbana-Champaign Campus, Materials Research Laboratory Fall workshop.

November 4th: Lectures, Vendors, Student Competition
November 5th: Tours, open lab in Biological TEM prep lab.



Students, attendees Information and registration: http://mrl.illinois.edu/mrl-biological-conference-2015
$20 per attendee, participants in the competition have their fee refunded.


VENDORS— Exhibitor registration: my.mrl.illinois.edu/eventreg/
$200 per table, one day, welcome to stay and demonstrate instruments the second day.



DEADLINES: October 15th for student competition participation. Information at: http://mrl.illinois.edu/mrl-biological-conference-2015



SPEAKERS:
Ka Yee LeeChemistry- U of Chicago
Speaking on the biophysics of proteins and lipids

Elizabeth Driskell – Veterinary Medicine
“Cellular and Organ Ultrastructure”

Rashid Bashir – Bioengineering
“Building Biological Machines with Living Cells”

Brian Cunningham – Bioengineering
“Quantitative Imaging of Live Cell Adhesion by Photonic Crystal Enhanced Microscopy”

Ryan Bailey – Chemistry
"Translational Biomedical Microdevices"

Rohit Bhargava – Bioengineering
“Chemical Imaging for Molecular and
Materials Analysis in Cancer”


Hope you can join us!


Lou Ann Miller




{ { { { { { { { { { { { { { { { {} } } } } } } } } } } } } } } }
Lou Ann Miller
Biological Electron Microscopy
Frederick Seitz Materials Research Laboratory
Lab Room 125 Office 374 MRL
104 South Goodwin Ave
Urbana, IL 61801
Campus mail code: MC-230
Hours: 7am-3:30 pm

217-244-1567
lamiller-at-illinois.edu
http://mrl.illinois.edu


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From: oshel1pe-at-cmich.edu
Date: Tue, 6 Oct 2015 08:47:40 -0500
Subject: [Microscopy] Re: viaWWW:SEM of leather

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Joe,

The Duco cement isn't helping you - you're mounting with an insulator. I
would use either a conductive carbon tab/tape *and* silver paint around
the edges. Then sputter coat, using 60/40 gold/palladium. Cheaper than
pure gold and it gives a better (finer grain coat).

More importantly, what kV and spot size are you using? Reducing both
will go a long way to reducing or eliminating charging. This may be all
you need to do.

You could also try adding osmium vapor "fixation". Place the sample in a
petri dish and a crystal of OsO4, or a drop of 2-4% OsO4 in water in a
smaller dish, so the OsO4 doesn't contact the sample. Don't cover the
same dish with the OsO4 but cover and parafilm sealed the big dish. Let
sit at room temp overnight - 24 hrs. The OsO4 doesn't bind that well to
proteins, but it will still bind.

Phil

} Email: joseph.uknalis-at-ars.usda.gov
} Name: Joe Uknalis
}
} Organization: USDA -ERRC
}
} Title-Subject: [Filtered] SEM of leather
}
} Message:
} I'm looking for suggestions on how to prepare leather for SEM viewing. (tanned& untanned, tanned is
} worse for charging) Currently I slice a cross section by hand as thin as possible. Mount with a
} small dab of Duco cement, and silver paint the edges. (Tried mounting with a dab of silver paint-
} not much improvement).
}
} The corium takes gold coating reasonably well but the grain seems to be resistant to all but LONG
} sputter coating. I get charging at higher magnifications.
}
} Would a different metal coating do better?
} Perfuse some conductive material into the sample? tho that might disturb structure.
}
} thanks
}
} Joe
--
Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

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From: microscopy.listserver-at-gmail.com
Date: Tue, 6 Oct 2015 18:26:17 -0500
Subject: [Microscopy] viaWWW:2015 MSNO Fall meeting -3 D printing - Wed Oct 14 3-7:30 at

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Email: nxa157-at-case.edu
Name: Nanthawan Avishai

Organization: Microscopy Society of NE Ohio (MSNO)

Title-Subject: [Filtered] 2015 MSNO Fall meeting -3 D printing - Wed Oct 14 3-7:30 at Jones Meeting
Room, Kilcawley Center, Youngstown State University pm

Message: Dear all,

Our MSNO Fall Meeting 2015 will go to a new and exciting place: Youngstown State University, partly
thanks to the hospitality of Dr. Dingqiang Li, Dr. Timothy Wagner and others at YSU. Please check
the detailed program at http://www.msneo.org/uploads/3/1/7/7/31779867/msno-fallmeetingflyer-2015.pdf.

This will also be our first attempt to upgrade our traditional fall meeting format and add even more
value (for example, to enhance the educational and student career networking functions) to the
program. The event will combine professional networking, lectures on fast growing technologies by
world experts, guided tours & demos at two outstanding YSU facilities, exhibitions by leading
vendors in the field, a nice dinner, a fun raffle and much more. Here are some of the highlights:

Two main talks on additive manufacture (3D-printing, by Dr. James McGuffin-Cawley, MSE Chair at
CWRU) and focused ion beam (FIB, by Dr. Lucille A. Giannuzzi, National MAS tour speaker with unique
academic and industrial experiences). Many thanks go to Dr. Valerie Woodward and National MAS for
arranging Dr Giannuzzi to fly to NEO for this event.

Tours & demos at Center for Innovation in Additive Manufacturing (3D-printing), and Electron
Microscopy facility. Basics on 3D-printing and electron microscopy (including FIB) will be introduced.
A professional table will be set up as our first effort to enhance the interaction between
students and industrial and academic professionals (experienced or new).
MSNO Student Awards: two winners of 2015 will be presented with certificates and monetary awards.
Several winners will be randomly drawn from our attendees at the RAFFLE.

Online registration is available at http://www.msneo.org/2015-fall-meeting-registration.html

Looking forward to seeing you at YSU!
MSNO Board

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From: microscopy.listserver-at-gmail.com
Date: Tue, 6 Oct 2015 18:27:12 -0500
Subject: [Microscopy] viaWWW:SEM of leather, thanks for feedback

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Email: joseph.uknalis-at-ars.usda.gov
Name: Joe Uknalis

Organization: USDA-ERRC

Title-Subject: [Filtered] SEM of leather, thanks for feedback

Message: Thanks everyone for the feedback.

I was using 10kv spot 3 on a FEI 200 FEG
I dropped to 5kv but the charging got worse ???

Unfortunately I don't have a carbon coating option.
Low vac/ESEM has poor resolution at 50,000X.

Will try the osmium vapor.
Gold/palladium is more $$ than gold alone, may give that a try.
Will try different spot sizes.

Unfortunately my email bounces reply to the list & I have to submit via the web based form.

thanks again

Joe


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From: milesd-at-us.ibm.com
Date: Tue, 6 Oct 2015 19:42:39 -0500
Subject: [Microscopy] Re: viaWWW:SEM of leather, thanks for feedback

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Joe,

I would start at about 800V and work my way up. I try to get to the point
where the electrons in (beam) are close to the electrons out (SEI, BSE,
etc.), and I have the best resolution I can, with minimal charging. With
the FEG, I think you will be able to get the mag you want, though I am not
familiar with your SEM. I start at low kV and work my way up. If you
start high and go down, you will never see that area as best as you could
have.

I hope this made some sense.
Regards,
Darrell




microscopy.listserver-at-gmail.com wrote on 10/06/2015 07:27:52 PM:

} From: microscopy.listserver-at-gmail.com
} To: Darrell Miles/Fishkill/IBM-at-IBMUS
} Date: 10/06/2015 07:27 PM
} Subject: [Microscopy] viaWWW:SEM of leather, thanks for feedback
}
}
}
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} Email: joseph.uknalis-at-ars.usda.gov
} Name: Joe Uknalis
}
} Organization: USDA-ERRC
}
} Title-Subject: [Filtered] SEM of leather, thanks for feedback
}
} Message: Thanks everyone for the feedback.
}
} I was using 10kv spot 3 on a FEI 200 FEG
} I dropped to 5kv but the charging got worse ???
}
} Unfortunately I don't have a carbon coating option.
} Low vac/ESEM has poor resolution at 50,000X.
}
} Will try the osmium vapor.
} Gold/palladium is more $$ than gold alone, may give that a try.
} Will try different spot sizes.
}
} Unfortunately my email bounces reply to the list & I have to submit
} via the web based form.
}
} thanks again
}
} Joe
}
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From: microscopy.listserver-at-gmail.com
Date: Wed, 7 Oct 2015 13:06:09 -0500
Subject: [Microscopy] viaWWW:Free workshop - 2 & 3 ‐ Dimensional Characterization of

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Joe

Sounds as if you are trying, but if the charge is worse with dropping to 5kV
that tells me you have lost the BSE contribution, this will be a big problem
whist using a TTL system. The converted BSE provide SE, but because they are
derived from BSE they do not carry so much charge information

The approach to a problem specimen should be as follows -

1. Use the smallest possible piece of material, fixed to the stub with
a good quality conducting media.
2. Start at the lowest kV that you are able to work with, and a small
spot size; all aimed at not damaging or charging the specimen. If you use a
TTL system go to the standard detector in the lower chamber, with about 7mm
working distance. You need a contribution of converted BSE (less charge)
which you are unlikely to have with TTL detection. If the signal is too low,
slightly increase the spot size.
3. If the specimen is not giving you a problem other than resolution,
increase the magnification using a fast scan if possible, to reduce the
intensity of beam on a particular area.
4. Having increased the magnification, as resolution is the problem,
increase the kV slightly (e.g. if you were using 1kV go to 1.5kV).
5. As long as there is no charge continue stepping up the kV until you
are happy with the result or the specimen charges. If you charge the
specimen take it to air to discharge it, and go back to an earlier kV.
Slight charge may be reduced by reducing the spot size slightly.
6. If resolution is still the problem, try moving the specimen closer
to the final lens by a few mm, not too close as you will lose the very
valuable converted BSE.
7. Still a resolution problem, if you have a TTL system try 10mm WD
then in steps down to 5mm WD with this system, and see if you are able to
obtain a satisfactory result (with many TTL systems between 7mm and 5mm
works).
8. All of the time you are looking for a mix of kV, spot size, and WD
that provides the best mix of signal and therefore performance.

Good luck

Steve

Steve Chapman FRMS
Protrain for Consultancy and Training in Electron Microscopy
+44 (0)7711 606967
web www.emcourses.com



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Email: nxa157-at-case.edu
Name: Nanthawan Avishai

Organization: Case Western Reserve University

Title-Subject: [Filtered] Free workshop - 2 & 3 ‐ Dimensional Characterization of Soft and
Porous Materials using DualBeam FIB ‐ SEM

Message: SCSAM will be hosting later this month a workshop on the use of FIB and SEM technology for
soft materials.

"2&3‐Dimensional Characterization of Soft and Porous Materials using Dual Beams FIB‐SEM"
presented by Brandon
Van Leer (FEI)

Tuesday,Oct20,2015
Case Western Reserve University, White building room 411
12:30‐13:00—Refreshments
13:00‐14:00—Presentation ‐ Polymers
14:00‐15:00—Presentation ‐ Bio-materials

Focused ion beam (FIB) microscopy uses either a Ga+ or Xe+ ions to remove material from a sample for
a variety of imaging and preparation techniques including cross-sections and thin sections for S/TEM
analysis. Considerable work has examined the effects of FIB for sputtering and exposure on a number
of hard materials such as metals or semiconductors. Often methods used to sputter hard materials do
not necessarily translate well when working with soft materials such as polymers, tissues, porous
materials or other beam sensitive materials.
In this workshop, we will work with soft materials in the DualBeam FIB-SEM to optimize the sputter
conditions to achieve optimal results for 2D and 3D characterization. Particularly, we will
emphasize beam conditions for successful sputtering of soft materials, the use of cryo-stages for
cryo DualBeam and investigate how to best optimize electron beam imaging conditions to mitigate
charge or achieve the highest resolution.

More info online at
http://www.msneo.org/uploads/3/1/7/7/31779867/2015_oct_-_fei__2d___3d_imaging_of_soft_material_workshop_2.pdf

To register for this workshop, Please email skd4-at-case.edu
Use “Soft‐Materials” as the subject line.

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From: ZZhang-at-uwyo.edu
Date: Wed, 7 Oct 2015 14:08:48 -0500
Subject: [Microscopy] Bio-Rad Radiance 2100 Confocal system give away

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi All:

We have a Bio-Rad Radiance 2100 Confocal Microscope that we no longer use. The confocal is attached to an upright Nikon microscope. We need to keep the Nikon microscope, but to give away the laser scanning system, including the scanhead, a blue diode laser (405 nm), an argon ion laser (457, 477, 488, 514 nm), a HeNe Laser (543 nm and a Red diode laser (637 nm). Please contact me if you are interested (it might be good for parts). It is FREE, but you do need to pay for all necessary shipping.

Thank you,

Zhaojie

Zhaojie Zhang, Ph.D.
Director, Jenkins Microscopy Facility
University of Wyoming
PHONE: 307-766-3038
Email: zzhang-at-uwyo.edu


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From: ZZhang-at-uwyo.edu
Date: Wed, 7 Oct 2015 14:43:20 -0500
Subject: [Microscopy] RE: Bio-Rad Radiance 2100 Confocal system give away

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Joe,

I agree with what Steve had to say and have some additional comments.

-- A sample of a square centimeter or so is probably not too large.
The conductive media should make a continuous electrical connection
between the bare metal stub and the upper surface and continuing onto
the upper surface of the sample. I often use Leit C carbon adhesive
from my friendly microscopy supply house because it combines
electrical conductivity with excellent mechanical strength that
materials like colloidal graphite (DAG) and silver paint don't have.
Silver paint can also be problematic in EDS analysis.

-- The power that field emission SEM offers is incredibly bright
source combined with a stable low voltage beam. Secondary electron
imaging (SEI) at low voltage provides the best topographical analysis
of surface roughness. Charge control in SEI is achieved by balancing
the number of incident electrons entering the sample and electrons
leaving as secondary and backscattered electrons. I highly recommend
the book "Scanning Electron Microscopy and X-ray Microanalysis", 3rd
Edition by Goldstein et al., Springer, 2013. The chapter on
Procedures for Elimination of Charging in Nonconducting Specimens
should be very helpful.

-- My 25 years of experience in low voltage, field emission SEM of
polymers leads me to believe that some of the imaging problems
experienced with leather may be similar to those observed in polymers.
Both are insulators and consist of low atomic weight elements. Like
Steve, I suggest you start at around 1 kV accelerating voltage. Use
the spot size that the service engineers use to check your spatial
resolution at 1 kV: this spot size is a good place to start because
the manufacturer knows it gives an excellence balance of resolution
and signal-to-noise.

-- For best results, I suggest you work with an uncoated sample. You
might start with a coated sample then move to the bare, uncoated
sample. Gold and gold-palladium coatings will obscure possibly
important surface information.

-- Faster scan rates produce less charging than longer scan rates.
If a single scan allows you to control charging but is somewhat noisy,
average several scans recorded using shorter scan rates. Do a few
quick tests on fresh areas of the sample to see how long a scan rate
you can use without producing charging. Be aware that your default
image acquisition scan rate may be much longer than the ideal scan
rate for your sample. If this happens, record your images at the
preferred rate.

-- Fortunately, sub-micrometer surface texture and porosity (as I
would expect to see in collage-based leather surfaces) dissipate
charging thus making imaging easier.

Feel free to reach out to me by off-line.

Cheers,

Gary Brown
Polymer Microscopy Consultant


---------- Forwarded message ----------
X-from: {protrain-at-emcourses.com}

Hi Joe

Sounds as if you are trying, but if the charge is worse with dropping to 5kV
that tells me you have lost the BSE contribution, this will be a big problem
whist using a TTL system. The converted BSE provide SE, but because they are
derived from BSE they do not carry so much charge information

The approach to a problem specimen should be as follows -

1. Use the smallest possible piece of material, fixed to the stub with
a good quality conducting media.
2. Start at the lowest kV that you are able to work with, and a small
spot size; all aimed at not damaging or charging the specimen. If you use a
TTL system go to the standard detector in the lower chamber, with about 7mm
working distance. You need a contribution of converted BSE (less charge)
which you are unlikely to have with TTL detection. If the signal is too low,
slightly increase the spot size.
3. If the specimen is not giving you a problem other than resolution,
increase the magnification using a fast scan if possible, to reduce the
intensity of beam on a particular area.
4. Having increased the magnification, as resolution is the problem,
increase the kV slightly (e.g. if you were using 1kV go to 1.5kV).
5. As long as there is no charge continue stepping up the kV until you
are happy with the result or the specimen charges. If you charge the
specimen take it to air to discharge it, and go back to an earlier kV.
Slight charge may be reduced by reducing the spot size slightly.
6. If resolution is still the problem, try moving the specimen closer
to the final lens by a few mm, not too close as you will lose the very
valuable converted BSE.
7. Still a resolution problem, if you have a TTL system try 10mm WD
then in steps down to 5mm WD with this system, and see if you are able to
obtain a satisfactory result (with many TTL systems between 7mm and 5mm
works).
8. All of the time you are looking for a mix of kV, spot size, and WD
that provides the best mix of signal and therefore performance.

Good luck

Steve

Steve Chapman FRMS
Protrain for Consultancy and Training in Electron Microscopy
+44 (0)7711 606967
web www.emcourses.com



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Thank you all for your interests in the confocal system. A new home for the system is found.

Best wishes,

Zhaojie


---------------------------------------------------------------------------------------
Hi All:

We have a Bio-Rad Radiance 2100 Confocal Microscope that we no longer use. The confocal is attached to an upright Nikon microscope. We need to keep the Nikon microscope, but to give away the laser scanning system, including the scanhead, a blue diode laser (405 nm), an argon ion laser (457, 477, 488, 514 nm), a HeNe Laser (543 nm and a Red diode laser (637 nm). Please contact me if you are interested (it might be good for parts). It is FREE, but you do need to pay for all necessary shipping.

Thank you,

Zhaojie

Zhaojie Zhang, Ph.D.
Director, Jenkins Microscopy Facility
University of Wyoming
PHONE: 307-766-3038
Email: zzhang-at-uwyo.edu


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From: microscopy.listserver-at-gmail.com
Date: Thu, 8 Oct 2015 07:06:42 -0500
Subject: [Microscopy] viaWWW:TEM, SAED, tilting & Camera Constant

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Email: tomw-at-uidaho.edu
Name: Tom Williams

Organization: Univ of Idaho

Title-Subject: [Filtered] TEM, SAED, tilting & Camera Constant

Message: Greetings,

We have a Mineralogy Grad student doing SAED on single mineral grains and is collecting patterns
while tilting the sample holder [X-tilt only between 0-20 degrees]. The student is careful and
thorough and is worried that the tilt will change her camera constant.

Question: to what degree does stage tilt affect the camera constant, and is there a recognized way
to compensate for the change?

Any assistance, suggestion, or reference is appreciated.

Thanks,
Tom


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From: microscopy.listserver-at-gmail.com
Date: Thu, 8 Oct 2015 10:52:38 -0500
Subject: [Microscopy] viaWWW:Unicryl sectioning issues

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Hello Tom,

Question: to what degree does stage tilt affect the camera constant, and is there a recognized way to compensate for the change?

Whenever you move to a new location or tilt the sample for acquisition of SAED patterns, you should recheck that the sample is still at eucentric height, and adjust if necessary. If lens conditions are kept the same and the sample is at eucentric height, the camera constant should be valid.

Best regards,

Elaine


Elaine F. Schumacher | Senior Research Scientist
McCrone Associates, Inc. . 850 Pasquinelli Drive . Westmont, IL 60559
P. 630.887.7100 | F. 630.887.7417 | www.mccrone.com
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Email: erin.stempinski-at-nih.gov
Name: Erin Stempinski

Organization: National Institutes of Health

Title-Subject: [Filtered] Unicryl sectioning issues

Message: Dear Listservers,

We are trying to do post-embed immunolabeling of cell pellets in Unicryl for a client. However, we
are having difficulties sectioning her blocks. The blocks are extremely hydrophilic; even if the
boat is very under-filled, water is still attracted to the block face and pulled over the knife.
Any sections that we get are pretty much unusable. I have experience sectioning K4M, LR White, and
Unicryl before, and the hydrophilicity has never been this bad.

The protocol we used is as follows:
• Fixation in 4% PFA and 0.1% glutaraldehyde in phosphate buffer
• Rinse in phosphate buffer (3 x 15 minutes)
• Dehydration series of 25%, 50%, 75%, 95%, and 3 100% changes with a freshly opened bottle of EtOH
• Infiltration of 1:3, 1:1, 3:1 of 100% EtOH and Unicryl (EtOH was same freshly opened bottle) and 4
changes of 100% Unicryl (2nd one was overnight)
• Polymerization in Eppendorf tubes in a 55°C oven for 1 day, then a second day once we started
having sectioning issues

Some troubleshooting we have done at the microtome includes:
• Varying cutting speed and microtome arm cycle speed
• Varying thickness setting of microtome arm advancement
• Using a new knife and new section of the knife edge
• Varying water level from slightly under-filled to severely under-filled
• Varying block face size & shape

Any advice would be greatly appreciated.

P.S. I am on the listserv so replies to microscopy-at-microscopy.com are welcome.

Best,

Erin Stempinski [C]
Electron Microscopy Technician
NHLBI Electron Microscopy Core Facility
MSC5570

erin.stempinski-at-nih.gov

301-496-6448

National Institutes of Health
Building 14E Room 104A
14 Service Road West
Bethesda, MD 20892-5570


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From: seo.max.pack-at-gmail.com
Date: 11 Oct 2015 06:08:45 +0300
Subject: Improve keywords ranks from first month

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Erin,
I have also used K4M and HM20, one being hydrophilic and later
hydrophobic. I have switched to HM20 for the same problems you cite. I
would eventually get sections with K4M, but not without a lot of duress. I
wonder why you polymerized in an Eppendorf and not BEEM capsules? The
container must be air tight and I know some Eppendorf's can leak. Also make
sure you are adding enough catalyst, by weight not volume as viscous liquids
will stick to any pipettes etc. Also I believe the K4M can be polymerized
with up to 5% by weight water, so I am curious as to why you are going
through 100% ethanol? I can typically stop at 90% ethanol and mix (i.e. LR
White) as my first infiltration step, especially since your protocol does
not protect membranes (you can use tannic acid and en-bloc UA staining for
that). If the second day of curing helped your problem then it’s a
polymerization issue. Hopefully all will work out, let us know.

Sincerely,
Michael Delannoy

-----Original Message-----
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Email: erin.stempinski-at-nih.gov
Name: Erin Stempinski

Organization: National Institutes of Health

Title-Subject: [Filtered] Unicryl sectioning issues

Message: Dear Listservers,

We are trying to do post-embed immunolabeling of cell pellets in Unicryl for
a client. However, we are having difficulties sectioning her blocks. The
blocks are extremely hydrophilic; even if the boat is very under-filled,
water is still attracted to the block face and pulled over the knife.
Any sections that we get are pretty much unusable. I have experience
sectioning K4M, LR White, and Unicryl before, and the hydrophilicity has
never been this bad.

The protocol we used is as follows:
• Fixation in 4% PFA and 0.1% glutaraldehyde in phosphate buffer
• Rinse in phosphate buffer (3 x 15 minutes)
• Dehydration series of 25%, 50%, 75%, 95%, and 3 100% changes with a
freshly opened bottle of EtOH
• Infiltration of 1:3, 1:1, 3:1 of 100% EtOH and Unicryl (EtOH was
same freshly opened bottle) and 4
changes of 100% Unicryl (2nd one was overnight)
• Polymerization in Eppendorf tubes in a 55°C oven for 1 day, then a
second day once we started
having sectioning issues

Some troubleshooting we have done at the microtome includes:
• Varying cutting speed and microtome arm cycle speed
• Varying thickness setting of microtome arm advancement
• Using a new knife and new section of the knife edge
• Varying water level from slightly under-filled to severely
under-filled
• Varying block face size & shape

Any advice would be greatly appreciated.

P.S. I am on the listserv so replies to microscopy-at-microscopy.com are
welcome.

Best,

Erin Stempinski [C]
Electron Microscopy Technician
NHLBI Electron Microscopy Core Facility
MSC5570

erin.stempinski-at-nih.gov

301-496-6448

National Institutes of Health
Building 14E Room 104A
14 Service Road West
Bethesda, MD 20892-5570


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31, 24 -- From prvs=71639c1f5=mdelann1-at-jhmi.edu Thu Oct 8 12:15:11 2015
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From advertise.bz222uba-at-gmail.com Thu Oct 8 16:51:04 2015
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Message-ID: {90F87DBD.83FC8DDE-at-gmail.com}

Hi Tom

The problem, as you rightly understand, is that a focal length change in the
objective lens will change the camera constant.
There are two ways to correct this type of problem - either set the
eucentric point very accurately prior to tilting, or always focus the tilted
specimen by using the eucentric height control (Z'). Either method is
acceptable, but I would use the latter in preference.

Enjoy

Steve

Steve Chapman FRMS
Protrain for Consultancy and Training in Electron Microscopy
+44 (0)7711 606967
web www.emcourses.com


-----Original Message-----
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Sent: 08 October 2015 13:09
To: protrain-at-emcourses.com

I've already received several responses and I can't thank everyone enough for your help. Here's some additional information:

-Dehydration steps were 15 minutes with 95% overnight. We dehydrated to 100% for two reasons: 1. we have used this protocol with success previously for this target and 2. ultrastructural preservation/sectioning was really poor in past experience when doing post-embed immunolabeling with plants and LR White if the sample was not completely dehydrated.

-We used the Eppendorf tubes because the pellets were very small and delicate (one was just a small smear of cells along the side of the tube) and we were worried about losing them in the transfer to gelatin capsules. The sheet on Unicryl on EMS seems to indicate that they should polymerize in the Eppendorf tubes just fine. Is that not what other people are experiencing?

-We are currently polymerizing even more by UV at 4 degrees.

-We also got a suggestion to place the samples overnight in Dri-rite which we will also try.

Thanks again for your help. I'll keep everyone updated if something works!

Erin Stempinski [C]
Electron Microscopy Technician
NHLBI Electron Microscopy Core Facility
MSC5570

erin.stempinski-at-nih.gov

301-496-6448

National Institutes of Health
Building 14E Room 104A
14 Service Road West
Bethesda, MD 20892-5570



-----Original Message-----
X-from: mdelann1-at-jhmi.edu [mailto:mdelann1-at-jhmi.edu]
Sent: Thursday, October 08, 2015 1:41 PM
To: Stempinski, Erin (NIH/NHLBI) [C]

Erin,
I have also used K4M and HM20, one being hydrophilic and later hydrophobic. I have switched to HM20 for the same problems you cite. I would eventually get sections with K4M, but not without a lot of duress. I
wonder why you polymerized in an Eppendorf and not BEEM capsules? The
container must be air tight and I know some Eppendorf's can leak. Also make sure you are adding enough catalyst, by weight not volume as viscous liquids will stick to any pipettes etc. Also I believe the K4M can be polymerized with up to 5% by weight water, so I am curious as to why you are going through 100% ethanol? I can typically stop at 90% ethanol and mix (i.e. LR
White) as my first infiltration step, especially since your protocol does not protect membranes (you can use tannic acid and en-bloc UA staining for that). If the second day of curing helped your problem then it's a polymerization issue. Hopefully all will work out, let us know.

Sincerely,
Michael Delannoy

-----Original Message-----
X-from: microscopy.listserver-at-gmail.com
[mailto:microscopy.listserver-at-gmail.com]
Sent: Thursday, October 08, 2015 12:14 PM
To: mdelann1-at-jhmi.edu

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Email: erin.stempinski-at-nih.gov
Name: Erin Stempinski

Organization: National Institutes of Health

Title-Subject: [Filtered] Unicryl sectioning issues

Message: Dear Listservers,

We are trying to do post-embed immunolabeling of cell pellets in Unicryl for
a client. However, we are having difficulties sectioning her blocks. The
blocks are extremely hydrophilic; even if the boat is very under-filled,
water is still attracted to the block face and pulled over the knife.
Any sections that we get are pretty much unusable. I have experience
sectioning K4M, LR White, and Unicryl before, and the hydrophilicity has
never been this bad.

The protocol we used is as follows:
Â. Fixation in 4% PFA and 0.1% glutaraldehyde in phosphate buffer
Â. Rinse in phosphate buffer (3 x 15 minutes)
Â. Dehydration series of 25%, 50%, 75%, 95%, and 3 100% changes with a
freshly opened bottle of EtOH
Â. Infiltration of 1:3, 1:1, 3:1 of 100% EtOH and Unicryl (EtOH was
same freshly opened bottle) and 4
changes of 100% Unicryl (2nd one was overnight)
Â. Polymerization in Eppendorf tubes in a 55°C oven for 1 day, then a
second day once we started
having sectioning issues

Some troubleshooting we have done at the microtome includes:
Â. Varying cutting speed and microtome arm cycle speed
Â. Varying thickness setting of microtome arm advancement
Â. Using a new knife and new section of the knife edge
Â. Varying water level from slightly under-filled to severely
under-filled
Â. Varying block face size & shape

Any advice would be greatly appreciated.

P.S. I am on the listserv so replies to microscopy-at-microscopy.com are
welcome.

Best,

Erin Stempinski [C]
Electron Microscopy Technician
NHLBI Electron Microscopy Core Facility
MSC5570

erin.stempinski-at-nih.gov

301-496-6448

National Institutes of Health
Building 14E Room 104A
14 Service Road West
Bethesda, MD 20892-5570


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From: microscopy.listserver-at-gmail.com
Date: Mon, 12 Oct 2015 08:28:33 -0500
Subject: [Microscopy] viaWWW:Confocal Microscopy Job Opportunities

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Email: md-at-personifysearch.com
Name: Mary Dickson

Organization: Personify

Title-Subject: [Filtered] Confocal Microscopy Opportunities

Message: We have recently had a world leading microscopy client open up several confocal
opportunities throughout the US. The ideal candidate would have an expertise in confocal microscopy
and a comfort working directly with customers.

Please contact me directly to learn more at - md-at-personifysearch.com

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From: microscopy.listserver-at-gmail.com
Date: Wed, 14 Oct 2015 07:13:23 -0500
Subject: [Microscopy] viaWWW:Asking for thoughts on Benchtop TEMs

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Email: scott.payne-at-ndsu.edu
Name: Scott Payne

Organization: Electron Microscopy Core Facility North Dakota State University

Title-Subject: [Filtered] TEM: Electron dose rate estimation for a JEOL 210 LaB6 TEM

Message: Hi Everyone,

We have JEOL 2100 LaB6 TEM and would like to estimate the “electron dose” samples are receiving
during EELS acquisitions. So I went to the literature and found that for the most part, the beam
current density at the sample was estimated from the read-out current density on the viewing screen
without a specimen and the fluence was reported as e/nm^2.

} From a reference paper a JEOL 2010F was used to give .24 A/cm^2 and .62 A/cm^2 current densities (dose rates) with the actual dose (depending on the time) being in the x10^5 to 10^7 e/nm^2 range.

I thought, I can do the math…. The read-out current density on the 2100 LaB6 is listed in pA/cm^2
units, so I converted to A/cm^2 to A/nm^2 and finally to e/nm^2/s for the dose rate and then
multiplied by the exposure time to give an estimate for the electron dose… However, values
calculated this way are not believable (x10^-5 to 10^-8 range)..

A representative read-current density value for a 10 nm probe in the LaB6 is 80 pA/cm^2. Is the
2010F read-out current density that much greater (in A/cm^2)because of the field emission source? Or
am I missing some crucial part of the calculation?



Thank you…..

Scott

Scott A. Payne
Assistant Director
Electron Microscopy Core Facility
North Dakota State University
Phone: 701.231.8234



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From ohn.bullocknewsqukwu-at-gmail.com Mon Oct 12 20:58:53 2015
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Email: levina.dear-at-health.nsw.gov.au
Name: Levina Dear

Organization: Pathology West ICPMR, Westmead, NSW, Australia

Title-Subject: [Filtered] Asking for thoughts on Benchtop TEMs

Message: Does anyone in the life science and / or diagnostic pathology EM microscopy community have
experience with Benchtop TEMs (e.g. LVEM25)?

I have been asked to consider how appropiate a benchtop TEM would be to diagnostic pathology.

All thoughts and experiences are welcome.



Levina



Levina Dear


levina.dear-at-health.nsw.gov.au


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From: wtivol-at-sbcglobal.net
Date: Thu, 15 Oct 2015 17:51:32 -0500
Subject: [Microscopy] Re: viaWWW:TEM: Electron dose rate estimation for a JEOL 210 LaB6 TEM

Contents Retrieved from Microscopy Listserver Archives
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} On Oct 12, 2015, at 5:57 PM, microscopy.listserver-at-gmail.com wrote:
}
} Email: scott.payne-at-ndsu.edu
} Name: Scott Payne
}
} Organization: Electron Microscopy Core Facility North Dakota State University
}
} Title-Subject: [Filtered] TEM: Electron dose rate estimation for a JEOL 210 LaB6 TEM
}
} Message: Hi Everyone,
}
} We have JEOL 2100 LaB6 TEM and would like to estimate the “electron dose” samples are receiving
} during EELS acquisitions. So I went to the literature and found that for the most part, the beam
} current density at the sample was estimated from the read-out current density on the viewing screen
} without a specimen and the fluence was reported as e/nm^2.
}
} } From a reference paper a JEOL 2010F was used to give .24 A/cm^2 and .62 A/cm^2 current densities (dose rates) with the actual dose (depending on the time) being in the x10^5 to 10^7 e/nm^2 range.
}
} I thought, I can do the math
} . The read-out current density on the 2100 LaB6 is listed in pA/cm^2
} units, so I converted to A/cm^2 to A/nm^2 and finally to e/nm^2/s for the dose rate and then
} multiplied by the exposure time to give an estimate for the electron dose
} However, values
} calculated this way are not believable (x10^-5 to 10^-8 range)..
}
} A representative read-current density value for a 10 nm probe in the LaB6 is 80 pA/cm^2. Is the
} 2010F read-out current density that much greater (in A/cm^2)because of the field emission source? Or
} am I missing some crucial part of the calculation?
}
}
}
} Thank you
} ..
}
} Scott
}
} Scott A. Payne
} Assistant Director
} Electron Microscopy Core Facility
} North Dakota State University
} Phone: 701.231.8234

Dear Scott,
I plugged in numbers for a simpler situation—1 A/cm^2—as follows: 1 A/cm^2=1 C/s*cm^2, and, since 1 C=6.241*10^18 e, and 1 cm=10^7 nm, 1A/cm^2=6.241*10^18*10^(-14)t=6.241*10^4t e/nm^2, where t is the exposure time in seconds, which is pretty much the same as the reference.
Yours,
Bill





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From: microscopy.gmb-at-gmail.com
Date: Wed, Oct 14, 2015 at 7:42 AM
Subject: [Microscopy] viaWWW:Asking for thoughts on Benchtop TEMs

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Levina,

I worked in biological microscopy many years ago and in polymer
microscopy for the last 33 years. TEM of conventional biological and
polymer microscopy use heavy metal staining, i.e. osmium and ruthenium
tetroxides in polymer microscopy and osmium tetroxide, uranyl acetate
and lead citrate in biological microscopy. In all heavy metal stained
samples (polymer and biological), amplitude scattering is the
mechanism of imaging. I have used TEM at 100-200 kV in both
disciplines with excellent results. More pertinent to your question,
I have had good results using brightfield STEM imaging (STEM) at 30 kV
in our field emission SEM (FESEM) using a brightfield transmitted
electron detector located below the sample stage. The ~1.5 nm at 15
kV resolution of our Hitachi S-4300 FESEM/STEM is lower than is seen
in conventional TEM's, and modern FESEM's and TEM/STEM's.

As one would expect, the contrast using FE-SEM/STEM is appreciably
higher at 25 kV than at 100-200 kV. We found this an advantage in
polymer microscopy. The lower spatial resolution was an issue at
magnifications above ~50kx.

You would need to use fixed beam TEM, not STEM. The limiting
resolution of STEM in a bench-top instrument will undoubtedly be poor
compared to a much more sophisticated high voltage TEM/STEM.

Assuming that the spatial resolution of the bench-top TEM is adequate,
my biggest concern is vibration. A good quality table with active an
anti-vibration isolation will almost certainly be essential. Under no
circumstances should you place this bench-top TEM on a standard lab
bench that is shared with other folks in the lab. These benches make
poor microscope tables under any circumstances. When shared with
people doing other tasks, or even leaning against the bench discussing
the latest football match, the vibration becomes prohibitive.

Finally, I would send several vendors a couple of samples of differing
section thickness, possibly 70 nm and 100 nm (or thicker if you work
in that range), for analysis useful magnifications. Have them send
you TIF files of each sample; don't accept JPG or other compressed
formats.

All the best,

Gary Brown
Polymer Microscopy Consultant


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Email: levina.dear-at-health.nsw.gov.au
Name: Levina Dear

Organization: Pathology West ICPMR, Westmead, NSW, Australia

Title-Subject: [Filtered] Asking for thoughts on Benchtop TEMs

Message: Does anyone in the life science and / or diagnostic pathology
EM microscopy community have
experience with Benchtop TEMs (e.g. LVEM25)?

I have been asked to consider how appropiate a benchtop TEM would be
to diagnostic pathology.

All thoughts and experiences are welcome.



Levina



Levina Dear


levina.dear-at-health.nsw.gov.au


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"An expert is a person who has made all the mistakes which can be made
in a very narrow field.” and "Prediction is very difficult, especially
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From: petereaton-at-hotmail.com
Date: Fri, 16 Oct 2015 13:38:23 -0500
Subject: [Microscopy] Porto AFM Training Course 2016

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Subject Porto AFM Course 2016

Dear All, 
We have recently starting taking reservations for our atomic force microscopy training course in 2016. This course is in it’s fifth year. The course features a mix of hands-on classes with different AFMs, lectures of background and theory, some advanced applications talks from invited experts in AFM, and a guided data analysis class.
The course will take place over four days (16th to 19th April, 2016), in the beautiful city of Porto, Portugal.
The fee includes course materials (all lectures, and software on disk), a copy of the book “Atomic Force Microscopy”, written by myself, refreshments, and a coarse meal. Also the course is a way off, places are very limited, and we are already receiving reservations, so early reservation of a place is recommended.
For more details go to http://afmhelp.com/course, or email me at afmhelp-at-gmail.com
Please do pass on this information to anyone who may be interested.
Best Regards,
Pete.
____________________________________________________________________________
Atomic Force Microscopy
Dr Peter Eaton and Dr Paul West
Available through all good bookshops, or direct from Oxford University Press at:
http://ukcatalogue.oup.com/product/9780199570454.do http://afmhelp.com



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From: news3409384-at-gmail.com
Date: 20 Oct 2015 15:11:41 +0300
Subject: re: Cheap FB Likes

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I need help finding a vendor.
I need a low magnification objective for my Nikon Optiphot. I would like to
have 1x if possible.
The existing lenses are marked 210/0, meaning tube length 210 mm.
Even if I can't match the tube length, I would like to try whatever
objective I can find.
Background information:
I'm using an upright compound microscope (Nikon Optiphot) in bright field
reflected light. I get clear images of the surfaces of interest, but I need
a wider field of view than I have with my 5x objective.
regards,
Don
=============================================
Don Chernoff, Ph.D., President
Advanced Surface Microscopy, Inc.; 3250 N. Post Rd., Suite 120;
Indianapolis IN 46226 USA
E-Mail: donc-at-asmicro.com www.asmicro.com
Voice: +1-317-895-5630 Toll free: +1-800-374-8557 (in USA & Canada)
Fax: +1-317-895-5652
[business activities since 1990: analytical services in AFM, AFM probes,
consulting, training, calibration and test specimens,
calibration and measurement software, used NanoScope equipment.]
=============================================


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From: microscopy.listserver-at-gmail.com
Date: Tue, 20 Oct 2015 07:42:14 -0500
Subject: [Microscopy] viaWWW:Research Fellow position available

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Email: m.arredondo-at-qub.ac.uk
Name: Miryam Arredondo

Organization: Queen's University Belfast

Title-Subject: [Filtered] Research Fellow position available

Message:
3 years research fellow opening at Queen's University Belfast:
"Far-From-Equilibrium Processing of Ferroelectric Thin Films on Glass and Polymeric Substrates"

Please see job details at:

https://hrwebapp.qub.ac.uk/tlive_webrecruitment/wrd/run/ETREC107GF.open?VACANCY_ID=26751463To&WVID=6273090Lgx&LANG=USA


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From: jmlebeau-at-gmail.com
Date: Tue, 20 Oct 2015 08:51:18 -0500
Subject: [Microscopy] STEM Postdoctoral Scholar Position

Contents Retrieved from Microscopy Listserver Archives
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The LeBeau research group in the Department of Materials Science & Engineering at North Carolina State University is seeking a postdoctoral research associate to start after December 2015. The post-doc will be responsible for the development of quantitative imaging and spectroscopy at the atomic scale using aberration corrected scanning transmission electron microscopy. Studies will include a wide range of materials, for example functional oxide-nitride interfaces and state-of-the-art alloys. These efforts will account for 70% of the post-doc’s responsibilities.

The remaining 30% of the post-docs responsibilities will be to oversee training of students/researchers and research collaborations on the Titan microscope. The post-doc will train users to operate the microscopy safely and independently, will help develop facility policies for user training and oversight, and will perform periodic service work for internal and external clients. The post-doc will also contribute to developing the internal and external user bases by presenting highlights of research on the websites and throughout campus, by providing tours to potential users, and by giving presentations at national and international meetings.

NCSU has an aberration corrected FEI Titan G2 microscope for ultra-high resolution STEM imaging and chemical analysis. Other equipment includes a JEOL 2010 STEM/TEM, several conventional TEMs, and a FIB. The position requires a Ph. D. in materials science or a related field. Experience with aberration corrected STEM is desired. Duration is between 1-3 years and salary is commensurate with qualifications.

Interested candidates should apply online here:

http://jobs.ncsu.edu/postings/59664

AA/EEO. In addition, NC State welcomes all persons without regard to sexual orientation.

==============================Original Headers==============================
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From: microscopy.listserver-at-gmail.com
Date: Tue, 20 Oct 2015 18:44:52 -0500
Subject: [Microscopy] viaWWW:Lift-out tips for Kleindiek

Contents Retrieved from Microscopy Listserver Archives
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X-from: yisong_han-at-yahoo.co.uk

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Email: yisong_han-at-yahoo.co.uk
Name: Yisong Han

Organization: Ulster University

Title-Subject: [Filtered] Lift-out tips for Kleindiek system

Message: Dear All,

There is a Kleindiek system (MM3A-EM) for the in-situ lift-out of TEM lamellae on our FEI Quanta 3D
FIB/SEM. I am wondering if any of you could recommend some suppliers who sell the right type of
tips/probe for such a system. Thanks very much in advance.

Yisong

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From: microscopy.listserver-at-gmail.com
Date: Fri, 23 Oct 2015 07:32:51 -0500
Subject: [Microscopy] viaWWW:scanning method for stone tools?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Listservers,

Thanks to everyone who gave suggestions for our Unicryl sectioning issues. We were able to get sections after polymerizing with UV at 4 degrees for 48 hours. Here are some other suggestions we got for anyone else who runs into such an issue:

-Putting samples in dri-rite/silica gel/some other desiccant overnight -Curing samples for 1 week -Varying the knife angle -Adding EtOH or Tween if the knife allows to break the surface tension

Thanks again for all the help!

Erin Stempinski [C]
Electron Microscopy Technician
NHLBI Electron Microscopy Core Facility
MSC5570

erin.stempinski-at-nih.gov

301-496-6448

National Institutes of Health
Building 14E Room 104A
14 Service Road West
Bethesda, MD 20892-5570



-----Original Message-----
X-from: Stempinski, Erin (NIH/NHLBI) [C]
Sent: Friday, October 09, 2015 9:01 AM
To: Stempinski, Erin (NIH/NHLBI) [C]

I've already received several responses and I can't thank everyone enough for your help. Here's some additional information:

-Dehydration steps were 15 minutes with 95% overnight. We dehydrated to 100% for two reasons: 1. we have used this protocol with success previously for this target and 2. ultrastructural preservation/sectioning was really poor in past experience when doing post-embed immunolabeling with plants and LR White if the sample was not completely dehydrated.

-We used the Eppendorf tubes because the pellets were very small and delicate (one was just a small smear of cells along the side of the tube) and we were worried about losing them in the transfer to gelatin capsules. The sheet on Unicryl on EMS seems to indicate that they should polymerize in the Eppendorf tubes just fine. Is that not what other people are experiencing?

-We are currently polymerizing even more by UV at 4 degrees.

-We also got a suggestion to place the samples overnight in Dri-rite which we will also try.

Thanks again for your help. I'll keep everyone updated if something works!

Erin Stempinski [C]
Electron Microscopy Technician
NHLBI Electron Microscopy Core Facility
MSC5570

erin.stempinski-at-nih.gov

301-496-6448

National Institutes of Health
Building 14E Room 104A
14 Service Road West
Bethesda, MD 20892-5570

Organization: National Institutes of Health

Title-Subject: [Filtered] Unicryl sectioning issues

Message: Dear Listservers,

We are trying to do post-embed immunolabeling of cell pellets in Unicryl for
a client. However, we are having difficulties sectioning her blocks. The
blocks are extremely hydrophilic; even if the boat is very under-filled,
water is still attracted to the block face and pulled over the knife.
Any sections that we get are pretty much unusable. I have experience
sectioning K4M, LR White, and Unicryl before, and the hydrophilicity has
never been this bad.

The protocol we used is as follows:
Â. Fixation in 4% PFA and 0.1% glutaraldehyde in phosphate buffer
Â. Rinse in phosphate buffer (3 x 15 minutes)
Â. Dehydration series of 25%, 50%, 75%, 95%, and 3 100% changes with a
freshly opened bottle of EtOH
Â. Infiltration of 1:3, 1:1, 3:1 of 100% EtOH and Unicryl (EtOH was
same freshly opened bottle) and 4
changes of 100% Unicryl (2nd one was overnight)
Â. Polymerization in Eppendorf tubes in a 55°C oven for 1 day, then a
second day once we started
having sectioning issues

Some troubleshooting we have done at the microtome includes:
Â. Varying cutting speed and microtome arm cycle speed
Â. Varying thickness setting of microtome arm advancement
Â. Using a new knife and new section of the knife edge
Â. Varying water level from slightly under-filled to severely
under-filled
Â. Varying block face size & shape

Any advice would be greatly appreciated.

P.S. I am on the listserv so replies to microscopy-at-microscopy.com are
welcome.

Best,

Erin Stempinski [C]
Electron Microscopy Technician
NHLBI Electron Microscopy Core Facility
MSC5570

erin.stempinski-at-nih.gov

301-496-6448

National Institutes of Health
Building 14E Room 104A
14 Service Road West
Bethesda, MD 20892-5570


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Email: dpettig08-at-gmail.com
Name: Devin Pettigrew

Organization: University of Arkansas

Title-Subject: [Filtered] scanning method for stone tools?

Message: Greetings!

I am an archaeologist specializing in experimental archaeology with hunting tools, and microwear on
stone tools. I did an extensive project for a thesis with atlatl darts and arrows shot into a
carcass, and then among other things, looked at the stone projectile points under a microscope. We
used a differential-interference binocular microscope with polarized light and Nomarski optics. We
took photographs at interesting locations, the most useful of which were recorded at 400X. This is
not a new process, but we did find some new, previously unreported phenomena, and this can be
attributed to the amount of detail recorded in the experiment.

The microwear study has taken a long time, and is lacking in several aspects. Specifically, future
tests would benefit heavily from having a microscopic view of the entire surface of each point both
before and after the experiment for direct comparison. Using our current approach this is
impossible. My question is, is there a way to scan the face of a stone projectile point at 100-400X
and end up with a digital recording of the microscopic surface? I strongly suspect there is, but I
wonder if the imagery would be of the type that would be useful to us. This is an exciting and very
new field for me, so I'm sure my question seems very simplistic. I would benefit from a little
direction.

Thanks!
Devin

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From: DusevichV-at-umkc.edu
Date: Fri, 23 Oct 2015 14:35:08 -0500
Subject: [Microscopy] viaWWW:scanning method for stone tools?

Contents Retrieved from Microscopy Listserver Archives
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I am not sure what do you mean under " a digital recording of the microscopic surface", but if it includes 3-D reconstruction, I'd recommend Micro-CT or newer optical systems with so-called infinite focus. Some confocal microscopes could be useful also (not really sure, I do not work with them). If you need just a digital picture, the scanning electron microscope (SEM) will be of use.

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Director
(816) 235-2072
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

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Email: dpettig08-at-gmail.com
Name: Devin Pettigrew

Organization: University of Arkansas

Title-Subject: [Filtered] scanning method for stone tools?

Message: Greetings!

I am an archaeologist specializing in experimental archaeology with hunting tools, and microwear on stone tools. I did an extensive project for a thesis with atlatl darts and arrows shot into a carcass, and then among other things, looked at the stone projectile points under a microscope. We used a differential-interference binocular microscope with polarized light and Nomarski optics. We took photographs at interesting locations, the most useful of which were recorded at 400X. This is not a new process, but we did find some new, previously unreported phenomena, and this can be attributed to the amount of detail recorded in the experiment.

The microwear study has taken a long time, and is lacking in several aspects. Specifically, future tests would benefit heavily from having a microscopic view of the entire surface of each point both before and after the experiment for direct comparison. Using our current approach this is impossible. My question is, is there a way to scan the face of a stone projectile point at 100-400X and end up with a digital recording of the microscopic surface? I strongly suspect there is, but I wonder if the imagery would be of the type that would be useful to us. This is an exciting and very new field for me, so I'm sure my question seems very simplistic. I would benefit from a little direction.

Thanks!
Devin

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From: High.Retention.Views-at-gmail.com
Date: 25 Oct 2015 14:54:34 +0200
Subject: re: Cheap high Retention Views

Contents Retrieved from Microscopy Listserver Archives
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} On Oct 23, 2015, at 5:57 AM, microscopy.listserver-at-gmail.com wrote:
}
} Message: Greetings!
}
} I am an archaeologist specializing in experimental archaeology with hunting tools, and microwear on
} stone tools. I did an extensive project for a thesis with atlatl darts and arrows shot into a
} carcass, and then among other things, looked at the stone projectile points under a microscope. We
} used a differential-interference binocular microscope with polarized light and Nomarski optics. We
} took photographs at interesting locations, the most useful of which were recorded at 400X. This is
} not a new process, but we did find some new, previously unreported phenomena, and this can be
} attributed to the amount of detail recorded in the experiment.
}
} The microwear study has taken a long time, and is lacking in several aspects. Specifically, future
} tests would benefit heavily from having a microscopic view of the entire surface of each point both
} before and after the experiment for direct comparison. Using our current approach this is
} impossible. My question is, is there a way to scan the face of a stone projectile point at 100-400X
} and end up with a digital recording of the microscopic surface? I strongly suspect there is, but I
} wonder if the imagery would be of the type that would be useful to us. This is an exciting and very
} new field for me, so I'm sure my question seems very simplistic. I would benefit from a little
} direction.
}
Hi Devin,
As Vladimir said, SEM could be sufficient. If you can collect the secondary electron signal, it is sensitive to the orientation of the surface of the specimen. There are a few potential difficulties, however: I don’t know what your specimen is made from, but if it’s something like obsidian, there could be charging issues. There could also be difficulties with field of view, depending on the size of the specimen—a few cm times 400X mag will give an image about a meter across. This can be constructed by montaging smaller images, but there may be very many of these. Neither of these is insurmountable, so talk to your local SEM guy or find a facility that will provide the service you need—this list is a good place to start.
Yours,
Bill





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From: christian.liebig-at-medizin.uni-tuebingen.de
Date: Mon, 26 Oct 2015 07:05:10 -0500
Subject: [Microscopy] Re: viaWWW:scanning method for stone tools?

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Hi,

why not try light microscopy? In many material labs there should be
compound microscopes with epi-illumination of some sort. Also in some
biomedical labs these machines are around. We have here used e.g.
epi-darkfield for similar things. It will be in the magnification range
you need, you can do extended depth of field projections if you're not
getting the full sample focussed at once. With a motorised stage it is
also easy to get a tiled image so you can image a very large specimen
into one dataset.
I guess the sample prep for light microscopy may be easier than for SEM?
But my SEM experience is from last century ...

Best,
Christian


On 23.10.2015 14:53, microscopy.listserver-at-gmail.com wrote:
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} Email: dpettig08-at-gmail.com
} Name: Devin Pettigrew
}
} Organization: University of Arkansas
}
} Title-Subject: [Filtered] scanning method for stone tools?
}
} Message: Greetings!
}
} I am an archaeologist specializing in experimental archaeology with hunting tools, and microwear on
} stone tools. I did an extensive project for a thesis with atlatl darts and arrows shot into a
} carcass, and then among other things, looked at the stone projectile points under a microscope. We
} used a differential-interference binocular microscope with polarized light and Nomarski optics. We
} took photographs at interesting locations, the most useful of which were recorded at 400X. This is
} not a new process, but we did find some new, previously unreported phenomena, and this can be
} attributed to the amount of detail recorded in the experiment.
}
} The microwear study has taken a long time, and is lacking in several aspects. Specifically, future
} tests would benefit heavily from having a microscopic view of the entire surface of each point both
} before and after the experiment for direct comparison. Using our current approach this is
} impossible. My question is, is there a way to scan the face of a stone projectile point at 100-400X
} and end up with a digital recording of the microscopic surface? I strongly suspect there is, but I
} wonder if the imagery would be of the type that would be useful to us. This is an exciting and very
} new field for me, so I'm sure my question seems very simplistic. I would benefit from a little
} direction.
}
} Thanks!
} Devin
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--
Christian Liebig, PhD

Light Microscopy Facility
Max-Planck-Institute for Developmental Biology
Spemannstrasse 35
D-72076 Tuebingen
Germany

Phone: +49 7071 601 443
e-mail: christian.liebig-at-tuebingen.mpg.de


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From: ph2-at-sprynet.com
Date: Mon, 26 Oct 2015 10:22:54 -0500
Subject: [Microscopy] Re: viaWWW:scanning method for stone tools?

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Devin:


1. Given what little in the way of qualitative size range is suggested by
your text (100-400x), your best bets would be Laser Profilometry or
Scanning White Light Interference Microscopy (SWLIM).

These will give you a Z elevation per X,Y coordinate.
You can then post-process to look at depth changes,
orientation/directional-related aspects, fractal dimensions, etc.

For simple work an old light section or Schmaltz Profile Microscope (I have
one at the office but use it very infrequently). This gives a simple x-y
line and would need to be automated for crunching larger data. See
Abouelatta, 3D surface roughness measurement using a light sectioning vision
system, Proc WCE, 698-703, 2010.

Since you are using DIC, you could create a 3D profile using MATLAB
processing on the image - but this assumes isotropic behavior which is
probably not the case for you.


2. A couple of papers in my library that you should get:

Stemp, Laser profilometry and length-scale analysis of stone tools, second
series experiment results, Scanning, 32, 4, 233-243, 2010
Borel, SEM and Optical Light Microscopy, two complementary approaches for
the understanding and interp of usewear and residues on stone tools, J Arch
Sci, 48, 46-59, 2014

Hint: You should do a lit search first.

3. I would also recommend getting Mahaney's "Atlas of Sand Grain Surface
Textures and Applications" It is not the same media (mineral v tool) but
the data on wear features observed in the SEM on sand grains will carry
over to wear on tools (he has also done wear on teeth).


Tony
.........................................
Andrew Anthony "Tony" Havics, CIH, PE
Environmental, Health & Safety, Microscopy, Materials Science & Forensic
Engineering
pH2, LLC
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Avon, IN 46123
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From: nicholls-at-uic.edu
Date: Mon, 26 Oct 2015 10:34:40 -0500
Subject: [Microscopy] TEM Position Available Core Facility

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

UIC

Position Opening at:

RESEARCH RESOURCES CENTER,
UNIVERSITY OF ILLINOIS AT CHICAGO

Microscopy Specialist/Research Specialist-Natural Sciences

The Electron Microscopy Service (EMS) of the Research Resources Center
(RRC) at the University of Illinois at Chicago has an open position for
a Microscopy Specialist. The facility provides electron and laser
microscopy and surface analysis services for the university research
community and external organizations from two sites on the campus. The
open position is in the RRC-East facility, which specializes in physical
and materials science fields. The east side facility includes a JEOL
JEM-ARM200CF aberration corrected STEM, JEOL JEM-3010 and JEOL JEM-100CX
TEMs, Kratos AXIS-165 XPS and a Renishaw Raman Spectrometer.

Qualified candidates must have a bachelor’s degree (preferably a
master’s degree or higher) in physical sciences, engineering or a
related field, with at least three years materials science transmission
electron microscopy experience. They will supervise the operation of the
specimen preparation area, including record keeping and maintenance and
will assist/supervise in the day to day running of the Electron
Microscopes and Surface Analysis. Interpersonal/ Communications skills
are important, as this individual will work with users, provide
technical advice and demonstrate how microscopy can advance their research.

Further information may be obtained by consulting the following website:
http://www.rrc.uic.edu/

Applicants should submit the following: cover letter, complete
curriculum vitae, and the names and addresses of three references. For
fullest consideration, applications should be received by November 18,
2015. All materials should be uploaded to
https://jobs.uic.edu/job-board/job-details?jobID=57495

The University of Illinois at Chicago is an Equal Opportunity,
Affirmative Action employer. Minorities, women, veterans and
individuals with disabilities are encouraged to apply.

--
Alan W Nicholls, PhD
Associate Director, RRC
Director of Research Service Facility (Electron Microscopy)
Research Resources Center - East (M/C 337)
Room 110, Science and Engineering South Building
The University of Illinois at Chicago
845 West Taylor St
Chicago, IL 60607-7058

Tel: 312 996 1227

Web site http://www.rrc.uic.edu/ems
Wiki site https://wiki.rrc.uic.edu/wiki/EMS


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From: gilpin-at-purdue.edu
Date: Tue, 27 Oct 2015 12:43:56 -0500
Subject: [Microscopy] Core facility opening at Purdue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi everyone,

We are looking for someone with electron microscopy
experience to join our core facility at Purdue. We have TEM, SEM, cryo, EDX,
dual-beam, immuno plus a wide range of sample prep equipment – HPF,
ultramicrotomes, cryo sectioning and vibratome. If you have experience in any ,
some or all (really?) of the above we would be interested to hear from you.
There is a formal job description and application procedure at http://purdue.taleo.net/careersection/wl/jobdetail.ftl?job=1502194&lang=en

Informal enquiries can be made to me.



Chris

Christopher J. Gilpin Ph.D.
Director, Life Science Microscopy Facility
Purdue University
Whistler Hall of Agriculture Research, Room S052
170 S. University St
West Lafayette, IN 47907
765-494-7750
gilpin-at-purdue.edu


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From: b-myers3-at-northwestern.edu
Date: Wed, 28 Oct 2015 17:55:45 -0500
Subject: [Microscopy] SEM Facility Manager Position

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Scanning Electron Microscopy (SEM) Facility Manager Position Available                       

The NUANCE Center is an active and vibrant user facility housing state-of-the-art instrumentation for materials characterization at Northwestern University. The SEM Facility Manager oversees all aspects of the Scanning Electron Microscopy (SEM) facility in the NUANCE Center, which includes five SEM instruments with a wide range of analytical capabilities. In addition, the SEM Facility Manager has supervisory responsibilities and oversees the related sample preparation facility, including an advanced dual-beam Focused Ion Beam (FIB) instrument.

In addition to microscopy tasks, the instruments in the SEM facility are also used for nanofabrication via electron and ion beam lithography. The SEM Facility Manager is the main interface for facility users on this equipment and is responsible for user training and technical support with the assistance of the Microscopy and Imaging Specialist. In addition, the Facility Manager has responsibilities which include: course development and laboratory teaching for SEM-related curriculum; equipment and consumable purchasing; equipment troubleshooting; development of new analytical techniques and capabilities; providing analytical services for both internal NU and external industrial clients; conducting facility tours and demonstrations. This position requires a unique combination of hands-on technical abilities with strong communication skills for training and teaching and offers excellent professional and academic development opportunities.


FOR MORE INFORMATION AND TO APPLY

http://bit.ly/nuance-sem



Ben Myers
SEM/FIB Facility Manager
NUANCE Center

Northwestern University
Mail: 2036 Cook Hall
Office: 1114 Cook Hall
2220 Campus Drive
Evanston, IL 60208-3108

ph: (847) 491-3439
fax: (847) 467-6573

http://www.nuance.northwestern.edu



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From: microscopy.listserver-at-gmail.com
Date: Wed, 28 Oct 2015 18:59:47 -0500
Subject: [Microscopy] viaWWW:Hair sample preparation for SEM/EDS

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Email: oscar.rivera-at-uda.cl
Name: Oscar Rivera

Organization: Universidad de Atacama

Title-Subject: [Filtered] Hair sample preparation for SEM/EDS

Message: Dear friends:

I want to ask you about if there is a special sample preparation for a momified hair that I need to
analyze by SEM and EDS.

The person who request this analysis wants to see the surface of the hair and assess/discard the
presence of heavy metals on the surface.

I have some concers about this, because I don't want to damage the sample (it seems there is only
ONE hair!). We have a Zeiss EVO MA 10 with Oxford X-Max 20 EDS detector and variable pressure mode.

We don't have coating or sputtering systems, and I am afraid that I could "burn" the hair when the
electron beam hits the sample.

Thanks in advice, I sincerely hope your answer.


Best regards,

ORRL

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From: microscopy.listserver-at-gmail.com
Date: Wed, 28 Oct 2015 19:00:45 -0500
Subject: [Microscopy] viaWWW:CSMMS Meeting: "Microscopy and Microanalysis Applications" in

Contents Retrieved from Microscopy Listserver Archives
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Email: whiteto-at-missouri.edu
Name: Tommi White

Organization: Central States Microscopy and Microanalysis Society

Title-Subject: [Filtered] CSMMS Meeting: "Microscopy and Microanalysis Applications" in St. Louis, MO

Message: Please join us on October 30th, 2015 in at Washington University in St. Louis, Missouri for
an upcoming Central States Microscopy and Microanalysis Meeting entitled "Microscopy & Microanalysis
Applications".

We are lucky to have MAS tour speaker Ed Vincenzi who will give a talk on "“The Twin Paradox: A
Study of Preservation & Disfigurement of Southworth and Hawes Daguerreotype Photographs".

Also, we will have our annual student presentation competition where we award a $1000 student travel
award to attend the national Microscopy and Microanalysis meeting.

Please visit the following website for more details.
http://emc.missouri.edu/csmms/

Thank you.
Tommi
Tommi A. White, Ph.D.
CSMMS secretary/webmaster
Assistant Professor of Biochemistry
Associate Director, Electron Microscopy Core Facility
University of Missouri
W125 Veterinary Medicine Building
1600 East Rollins Street
Columbia, MO 65211
573-882-8304
WhiteTo-at-missouri.edu
www.emc.missouri.edu


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From: microscopy.listserver-at-gmail.com
Date: Wed, 28 Oct 2015 19:01:45 -0500
Subject: [Microscopy] viaWWW:Free Scanning Auger Microprobe

Contents Retrieved from Microscopy Listserver Archives
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Email: mandih-at-ixrfsystems.com
Name: Mandi Hellested

Organization: IXRF Systems

Title-Subject: [Filtered] Free Scanning Auger Microprobe

Message: Free to a good home: a Perkin-Elmer PHI 660 Scanning Auger Microprobe.

Last use around 2010-11, set to be scrapped. Might be working or can be used for parts

It is in Ontario, Canada, you haul it off site.

Interested parties please contact Mandi at MandiH-at-ixrfsystems.com


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From: microscopy.listserver-at-gmail.com
Date: Thu, 29 Oct 2015 07:34:03 -0500
Subject: [Microscopy] viaWWW:Free Scanning Auger Microprobe

Contents Retrieved from Microscopy Listserver Archives
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Email: mandih-at-ixrfsystems.com
Name: Mandi Hellested

Organization: IXRF Systems

Title-Subject: [Filtered] Free Scanning Auger Microprobe

Message: Free to a good home: a Perkin-Elmer PHI 660 Scanning Auger Microprobe.

Last use around 2010-11, set to be scrapped. Might be working or can be used for parts

It is in Ontario, Canada, you haul it off site.

Interested parties please contact Mandi at MandiH-at-ixrfsystems.com


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From: jhall-at-2spi.com
Date: Thu, 29 Oct 2015 07:34:49 -0500
Subject: [Microscopy] viaWWW:Hair sample preparation for SEM/EDS

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Hi Oscar,

I can't say that I have ever looked at mummified hair in the SEM, but I have examined human hair. In my case, it was before and after images to compare hair care products, so I was forced to examine them uncoated. It can be done if you are careful - I did it with a tungsten filament at around 15 kV and the hair survived.

One of the most important things is to make sure that each end of the hair is grounded electrically. Secondly, start with as low of a kV as possible (I realize you are doing EDS, but depending on the elements you are looking for you may be able to run your scans at lower accelerating voltages). Experimenting with the VP option may also help give you a better image.

Since you only have one hair to work with, you might want to start with a piece of your own hair, and see if you can analyze it without damaging it. That should give you a fair approximation of what to expect, although I don't know what changes may have occurred to the mummified hair over time.

Hopefully this at least gives you a couple of ideas. I'd be happy to try to answer any more questions if they should arise.

Cheers,

Jeff


Jeffrey A. Hall | Microscopist
Structure Probe, Inc. | 206 Garfield Ave. | West Chester, PA 19380, USA
1-610-436-5400 x106 | jhall-at-2spi.com | http://www.2spi.com
Twitter: http://2spi.com/twitter | Facebook: http://2spi.com/facebook



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Name: Oscar Rivera

Organization: Universidad de Atacama

Title-Subject: [Filtered] Hair sample preparation for SEM/EDS

Message: Dear friends:

I want to ask you about if there is a special sample preparation for a momified hair that I need to analyze by SEM and EDS.

The person who request this analysis wants to see the surface of the hair and assess/discard the presence of heavy metals on the surface.

I have some concers about this, because I don't want to damage the sample (it seems there is only ONE hair!). We have a Zeiss EVO MA 10 with Oxford X-Max 20 EDS detector and variable pressure mode.

We don't have coating or sputtering systems, and I am afraid that I could "burn" the hair when the electron beam hits the sample.

Thanks in advice, I sincerely hope your answer.


Best regards,

ORRL

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From: mayas003-at-yahoo.com
Date: Thu, 29 Oct 2015 15:18:34 -0500
Subject: [Microscopy] Please unsubscribe

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Omayra Velez
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From: DusevichV-at-umkc.edu
Date: Thu, 29 Oct 2015 15:31:56 -0500
Subject: [Microscopy] viaWWW:Hair sample preparation for SEM/EDS

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I have looked at fresh hair in VP mode without any special preparation. It is definitely a subject to beam damage, do not remember exactly at what magnification, but it should be something in between x1000 and x5000.
Just a reminder: when doing EDS in VP mode be sure to place hair on wide enough carbon substrate (could be carbon tape); electron skirt may spread as far as a millimeter or two, and EDS can pick up elements from a specimen stub.
Good luck,
Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Director
(816) 235-2072
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784


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Name: Oscar Rivera

Organization: Universidad de Atacama

Title-Subject: [Filtered] Hair sample preparation for SEM/EDS

Message: Dear friends:

I want to ask you about if there is a special sample preparation for a momified hair that I need to analyze by SEM and EDS.

The person who request this analysis wants to see the surface of the hair and assess/discard the presence of heavy metals on the surface.

I have some concers about this, because I don't want to damage the sample (it seems there is only ONE hair!). We have a Zeiss EVO MA 10 with Oxford X-Max 20 EDS detector and variable pressure mode.

We don't have coating or sputtering systems, and I am afraid that I could "burn" the hair when the electron beam hits the sample.

Thanks in advice, I sincerely hope your answer.


Best regards,

ORRL

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From: baskin-at-bio.umass.edu
Date: Thu, 29 Oct 2015 16:45:05 -0500
Subject: [Microscopy] fluctuating light problem

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Colleagues,
I hope somone can help me with this. When starting
a new application, I noticed that the image feed from a CCD camera on a
light microscope was fluctuating in intensity. Enough to easily see
background flickering when playing back a movie. I want to measure
intensity so this is a problem. After troubleshooting, it seems to be
casused by fluctuating mains power. I would like to know how I might go
about stablizing the power, either with some kind of line conditioner
(but what kind?) or perhaps a battery driven solution.

Here is the key experiment that I interpet as implicating the
mains. I attached the camera to a macro lens and set up in a dark room
(no microscope), a static scene, and compared the following arrangments:

A: light from an IR diode array (driven off mains by an adaptor), 10
msec expsosure
B: light from fluorescent room lights, 10 msec expsoure

(The camera mfr rep told me that a 10 msec exposure is fine for this
camera, which for the record is an IDS ÂľEye.)

For each, I took a five-frame sequence, with each frame separated by 60
sec. Then measured the average gray level for a box in the middle of the
field on each frame. The data are:

A (IR): 159 +/- 3.2 (mean gray +/- SD)
B (fluoro): 142 +/- 0.5

The image sequence for B looks totally steady to the eye, while the one
for A is easily seen to flicker. I am thinking that some kind of noise
in the mains power gets across the DC adaptor driving the LED array.
This assumes that the room fluorescents are immune to such noise. Note
that the microscope uses a 20 W tungsten/halogen lamp that is powered by
an AC stepdown transformer and I think the same noise issue happens there.

From looking at the scene (and live readout of the histogram) the noise
seems to be in the 1 to 10 Hz range, but this is simply based on visual
inspection.

As I said, some ideas for how to stabilize the microscope's light source
would be gratefully (!) appreciated. Thank you.

Tobias


--
__ ___ ^ ___ ___ Tobias I. Baskin
/ \ / / \ / \ Professor
/ / / / \ \ \ Biology Department
/ __/ /__ /___ \ \ \__ University of Mass.
/ / / \ \ \ 611 N. Pleasant St.
/ / / \ \ \ Amherst, Massachusetts
/ /___ / \ \___/ \_____ USA 413-545-1533
www.bio.umass.edu/biology/baskin


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From: microscopy.listserver-at-gmail.com
Date: Thu, 29 Oct 2015 18:22:20 -0500
Subject: [Microscopy] viaWWW:Knife mark repair using Gatan Digital Micrograph

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Name: Ravi

Title-Subject: [Filtered] Knife mark repair using Gatan Digital Micrograph.

Message: Hi,
Could any one guide me "how to remove the knife mark from image using gatan digital micrograph."
Images are taken in Gatan TEM camera.
TIA.

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From: PhillipsT-at-missouri.edu
Date: Thu, 29 Oct 2015 18:30:20 -0500
Subject: [Microscopy] viaWWW:Knife mark repair using Gatan Digital Micrograph

Contents Retrieved from Microscopy Listserver Archives
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I would use caution on doing that. It would probably invalidate the use of the photo in a scientific publication since you would be seriously modifying the pixels. One acceptable solution for small defects is to make sure you overlay the defect with an arrow or something as you label the images. As long as you are not intentionally hiding actual data (e.g., an organelle that you say are absent in the cell), I see this as a valid strategy. This seems "fair" since any viewer can deduce that what is under the arrow is not visible whereas a good image processing manipulation to "erase" a knife mark would "fool" many viewers and therefore be unethical.

Thomas E. Phillips, Ph.D
Professor of Biological Sciences
Director, Molecular Cytology Core
2 Tucker Hall
University of Missouri
Columbia, MO 65211-7400
573-882-4712 (office)
573-882-0123 (fax)
phillipst-at-missouri.edu

http://www.biology.missouri.edu/faculty/phillips.html
http://www.biotech.missouri.edu/mcc/


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Title-Subject: [Filtered] Knife mark repair using Gatan Digital Micrograph.

Message: Hi,
Could any one guide me "how to remove the knife mark from image using gatan digital micrograph."
Images are taken in Gatan TEM camera.
TIA.

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From: henning.stahlberg-at-unibas.ch
Date: Fri, 30 Oct 2015 11:32:09 -0500
Subject: [Microscopy] ICON 2016: 1st International Conference On Nanoscopy in Basel,

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Dear Colleagues,

We are hereby announcing ICON Europe 2016, the 1st International Conference On Nanoscopy.

We invite you to attend this conference, which will be the first of this newly created series, uniquely focusing on super-resolution light microscopy.

Top speakers of the field are confirmed, including leading international scientists in the field of super-resolution light microscopy, such as Eric Betzig or Markus Sauer.

ICON 2016 will be held at the Biozentrum Basel, Switzerland, on June 7-10, 2016, and will be limited to a maximum of 250 participants. In addition to the 18 invited speakers, additional speakers chosen from submitted Abstracts will give shorter talks. There will also be posters sessions and plenty of time for discussion during free time.

We hope that the conference series will have a successful start with great science, lively discussions, and lots of new ideas arising from the interactions of the attending scientists.

For more information, please visit http://www.icon-europe.org
Please feel free to forward this email to anybody who might be interested in this conference.

Best regards,
Henning.

Henning Stahlberg, PhD
Prof. for Structural Biology, C-CINA, Biozentrum, University Basel
Mattenstrasse 26 | D-BSSE | WRO-1058 | CH-4058 Basel | Switzerland
http://c-cina.org | Tel. +41-61-387 32 62





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From: vray-at-partbeamsystech.com
Date: Tue, 3 Nov 2015 07:58:09 -0600
Subject: [Microscopy] Re: fluctuating light problem

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} On Oct 29, 2015, at 5:01 PM, PhillipsT-at-missouri.edu wrote:
}
} I would use caution on doing that. It would probably invalidate the use of the photo in a scientific publication since you would be seriously modifying the pixels. One acceptable solution for small defects is to make sure you overlay the defect with an arrow or something as you label the images. As long as you are not intentionally hiding actual data (e.g., an organelle that you say are absent in the cell), I see this as a valid strategy. This seems "fair" since any viewer can deduce that what is under the arrow is not visible whereas a good image processing manipulation to "erase" a knife mark would "fool" many viewers and therefore be unethical.
}
} Thomas E. Phillips, Ph.D
}
} Email: ravi.thakkar369-at-gmail.com
} Name: Ravi
}
} Title-Subject: [Filtered] Knife mark repair using Gatan Digital Micrograph.
}
} Message: Hi,
} Could any one guide me "how to remove the knife mark from image using gatan digital micrograph."
} Images are taken in Gatan TEM camera.
} TIA.
}
Dear Ravi & Thomas,
The issue of digital manipulations was discussed many years ago, and, at that time, it was agreed that such manipulations were deemed OK if a full explanation of what was done was included in the figure caption and the original image was made available. If the caption contained the words, “A knife mark was removed from this figure using [insert process name here].” I as a reviewer would be OK with it; however, I might ask the author to see the original image if there were any indications that such processing could change the information the author intended to present. One tedious way to remove the knife mark would be to copy nearby pixels and paste them over the mark. I’m not sure if this can be done in DM, but ImageJ can do it.
Yours,
Bill





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Email: wul-at-mail.montclair.edu
Name: Laying Wu

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Title-Subject: [Filtered] Confocal Microscopy Workshop

Message: Dear all,

Montclair State University and Cal Zeiss will co-host a two-day Confocal Microscopy Workshop on
November 4-5, 2015. This workshop is designed for beginning and intermediate users of confocal
microscopes.It includes lectures, microscope demo, and customer sample free test. For more details
and free registration, please visit:

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Space is limited, please register it ASAP.
I look forward to see you at the workshop.

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From conversion.seo-at-gmail.com Sun Nov 1 14:34:50 2015
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X-from: k.jack-at-uq.edu.au

Hi Tobias,

With camera exposure time of 10 mSec you are likely to see flickering of
IR of diodes due to ripple of the power supply - line frequency ripple
is about 17mSec and after bridge rectification could become 9mSec - both
a close to the exposure speed and thus aliasing, Nyquist works.

Driving IR source from a well-filtered DC source or battery would
definitely eliminate such ripple. Depending on the design of LED driver,
adding electrolytic capacitor of few thousand microfarad to filter
rectifier noise could accomplish the same.

Valery Ray - also with AIM Lab, UMDCP
=======================================
PBS&T, MEO Engineering Co., Inc.
290 Broadway, Suite 298
Methuen, MA 01844, USA
Phone: +1-978-296-5063
E-Mail: vray-at-partbeamsystech.com
Web: www.partbeamsystech.com
Web: www.freudlabs.com
UMD E-Mail: vray-at-umd.edu

On 10/29/2015 5:47 PM, baskin-at-bio.umass.edu wrote:
} ----------------------------------------------------------------------------
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}
} Colleagues,
} I hope somone can help me with this. When starting
} a new application, I noticed that the image feed from a CCD camera on a
} light microscope was fluctuating in intensity. Enough to easily see
} background flickering when playing back a movie. I want to measure
} intensity so this is a problem. After troubleshooting, it seems to be
} casused by fluctuating mains power. I would like to know how I might go
} about stablizing the power, either with some kind of line conditioner
} (but what kind?) or perhaps a battery driven solution.
}
} Here is the key experiment that I interpet as implicating the
} mains. I attached the camera to a macro lens and set up in a dark room
} (no microscope), a static scene, and compared the following arrangments:
}
} A: light from an IR diode array (driven off mains by an adaptor), 10
} msec expsosure
} B: light from fluorescent room lights, 10 msec expsoure
}
} (The camera mfr rep told me that a 10 msec exposure is fine for this
} camera, which for the record is an IDS ÂľEye.)
}
} For each, I took a five-frame sequence, with each frame separated by 60
} sec. Then measured the average gray level for a box in the middle of the
} field on each frame. The data are:
}
} A (IR): 159 +/- 3.2 (mean gray +/- SD)
} B (fluoro): 142 +/- 0.5
}
} The image sequence for B looks totally steady to the eye, while the one
} for A is easily seen to flicker. I am thinking that some kind of noise
} in the mains power gets across the DC adaptor driving the LED array.
} This assumes that the room fluorescents are immune to such noise. Note
} that the microscope uses a 20 W tungsten/halogen lamp that is powered by
} an AC stepdown transformer and I think the same noise issue happens there.
}
} From looking at the scene (and live readout of the histogram) the noise
} seems to be in the 1 to 10 Hz range, but this is simply based on visual
} inspection.
}
} As I said, some ideas for how to stabilize the microscope's light source
} would be gratefully (!) appreciated. Thank you.
}
} Tobias
}
}

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From: xinran.liu-at-yale.edu
Date: Tue, 3 Nov 2015 20:07:44 -0600
Subject: [Microscopy] UPS for TEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Colleagues,

I am looking for suggestion on purchasing an UPS system for a 200kV FEG TEM.

We are in need to replace an UPS unit that supports a FEI Tecnai F20, this microscope is used mainly by cryo EM users for single-particle works. The quote we’ve obtained from Toshiba for a new 1600 XPi costs over $8K, I feel the price is too high and hope to find an alternative that is less pricey.

Thank you very much in advance.


Xinran Nick Liu, M.D. & Ph.D.

Director of CCMI Electron Microscopy Core Facility
Research Scientist in Cell Biology
Yale University School of Medicine
333 Cedar Street, SHM I-E16A
New Haven, CT 06520
Office: 203.785.4050
Lab: 203.785.5390
http://medicine.yale.edu/ccmi/em





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11, 33 -- From: "Liu, Xinran" {xinran.liu-at-yale.edu}
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Subject: [Microscopy] viaWWW:Rotary Microtome Glass Knife Carrier

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Email: smodla-at-udel.edu
Name: Shannon Modla

Organization: University of Delaware

Title-Subject: [Filtered] Rotary Microtome Glass Knife Carrier

Message: Hi Everyone,

A client wants us to section some blocks of methacrylate embedded sample for light microscopy. We
have a Microm HM 335 E rotary microtome, but we don't have a glass knife carrier. I haven't been
able to find any glass knife carriers for this model of rotary microtome. We were hoping to find a
relatively inexpensive solution. I was wondering if anyone has any ideas.

Thanks,
Shannon

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From: seo.max.pack-at-gmail.com
Date: 04 Nov 2015 11:52:48 +0200
Subject: Improve keywords ranks from first month

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Dear Shannon,

unfortunately no customer or user of MICROM, but (since interested) with Google search for
" Microm HM 335 E rotary microtome AND GLASS KNIFE HOLDER " I found the following:

https://www.thermoscientific.com/content/dam/tfs/SDG/APD/APD%20Documents/Product%20Manuals%20&%20Specifications/Histology%20Equipment%20and%20Supplies/HM%20355S%20Rotary%20Microtome%20387861.pdf
Therein: at least once you'll find "glass knives" (setting cutting angle) but I could not find a special hint on glass knife holder - glass knife carrier or else specific.

But the second mentioned document, which can be found at:
http://www.bu.edu/becf/downloads/BioInterface%20Technologies/HM%20355S%20Manual.pdf
mentions ..... {knife carrier S for glass and diamond knives} .......

As this therefore might be /might have been a special accessory part of the rotary microtome it might also be that you will find answers requesting or asking such at
Representatives, or a field office of, or directly, at THERMOFISHER or
FISHER Scientific Company
-at- https://www.fishersci.com/us/en/contactus.html where you will find:

Contact Us
Product & Order Related Questions - US
General Customer Service
Phone: 1-800-766-7000
Fax: 1-800-926-1166

Healthcare Customers
Phone: 1-800-640-0640
Fax: 1-800-290-0290

Education Customers (K-12)
Phone: 1-800-955-1177
Fax: 1-800-955-0740
Website Support
Phone: 1-877-885-2081

Mailing Address
300 Industry Drive
Pittsburgh, PA 15275 USA

or via
https://www.fishersci.com/us/en/catalog/search/products?keyword=MICROM+microtome&nav=

e.g.: Search for: "MICROM glass knife carrier S", in the Search results one finds:
Pos. 2 Thermo Scientific Specialized Knife Carriers for Rotary Microtomes with Dovetail Guideway
(= https://www.fishersci.com/shop/products/specialized-knife-carriers-rotary-microtomes-dovetail-guideway/454050)
Enhance the precision of knife movement with Thermo ScientificT Specialized Knife Carriers for Rotary Microtomes with Dovetail Guideway.
Pricing & Availability 

as well as:
Pos.7 Thermo ScientificT HM 355S Automatic Microtomes
Section even the largest specimens with unmatched quality by using the Thermo ScientificT HM 355S Automatic Microtome.
Pricing & Availability  Specifications 
 
Pos. 9: Thermo ScientificT MicromT Accessories
Accessory items for use with the Thermo Scientific Microm product line Pricing & Availability 


Just to (honestly) remind you/anyone :
Until 30th of September 2014 it was the highly profitable company:
MICROM International GmbH
Microm International GmbH
Robert-Bosch-Str. 49
69190 Walldorf (Baden)
Baden-Württemberg
GERMANY which produced the MICROM HM 335E rotary microtome...BUT
on 30th of September 2014 Thermofisher closed that Company to China and UK/GB.

Unfortunately I do not know whether the also found URL:
http://www.medicregister.com/Microm_International_GmbH/Supplier/sid1488.htm
is a real and active one..but you could - at least - try to get into contact with {Microm_International_GmbH}
Click Here To EMAIL INQUIRY (=http://www.medicregister.com/Microm_International_GmbH/rfq/sid1488.htm)
Web: http://www.microm.de
E-Mail: infomicrom.de
Address: Robert-Bosch-Str. 49, Walldorf D-69190, Germany
Phone: +49-(6227)-836-0 | Fax: +49-(6227)-836-111

Best wishes and good luck,
Wolfgang



OR Dr. phil. Wolfgang Muss*
Head of EM-Lab (retiring 30th November 2015)
Honorary Secretary of SCUR (Society for Cutaneous Ultrastructure Research): see Announcements below
Member of Works Council SALK-LKH & Central Works Council SALK
Safety Counsellor SALK-LKH

(also) Member of the Microscopical Society of America
University Institute of Pathology, SALK-LKH
(Salzburger Landeskliniken gemeinnuetzige GesmbH, Landeskrankenhaus = Federal State General Hosp.)
Muellner Hauptstrasse 48
A-5020 SALZBURG AUSTRIA/EUROPE
Web(German): http://ww.salk.at
Web(German): http://www.pmu.ac.at
Phone work: +43+662+4482+4720
Mobile phone work: +43+662+4482-57704
Fax-No. at work: ++43+662+4482-882 ext (please, only by indicating: "c/o W. Muss")
E-Mail work: W.Muss-at-SALK.at
Private Address: Ignaz-Rieder-Kai 19/6, A-5020 SALZBURG, AUSTRIA
Mobile-phone private: ++43+676+5 369-456
E-Mail private: wij.muss-at-aon.at

*)registered in: www.researchgate.net
(URL: http://www.researchgate.net/profile/Wolfgang_MUSS/ )
[NB.: Registration (free of charges)]
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It's free of charge and designed to meet researchers' needs
More than 7,000,000 scientists from over 193 countries have already joined!
Join 7 million researchers, including 45 Nobel Laureates


-------------------------------------------------------------------------
SCUR-Secretary:
Information on behalf of
Society for Cutaneous Ultrastructure Research (SCUR) - The SKIN IMAGING Society
Visit the WEBSITE of
SCUR  - The Skin Imaging Society
at } http://www.scur.org {
-------------------------------------------------------------------------
2016
The 43rd Ann. SCUR meeting will take place during the first 2 days of the
16th European Microscopy Congress - EMC2016 (http://www.emc2016.fr/en/),
29th-30th August 2016 in LYON, France.
i.e., Monday afternoon from 2 PM to 7 PM and Tuesday whole day.
We expect some 30 oral presentations and 3 guest lectures + posters.





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Gesendet: Mittwoch, 04. November 2015 03:28
An: Muß Wolfgang
Betreff: [Microscopy] Rotary Microtome Glass Knife Carrier

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Hi Everyone,

A client wants us to section some blocks of methacrylate embedded sample for light microscopy. We
have a Microm HM 335 E rotary microtome, but we don't have a glass knife carrier. I haven't been
able to find any glass knife carriers for this model of rotary microtome. We were hoping to find a
relatively inexpensive solution. I was wondering if anyone has any ideas.

Thanks,
Shannon

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From: eschumacher-at-mccrone.com
Date: Wed, 4 Nov 2015 15:58:08 -0600
Subject: [Microscopy] Meeting Announcement: Midwest Microscopy and Microanalysis Society

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Greetings Fellow Microscopists,

The Midwest Microscopy and Microanalysis Society will hold its 2015 Fall meeting on Friday, November 20th, at Baxter Healthcare Corporate Headquarters in Deerfield, IL. The program will showcase talks presented at M&M 2015 from the Midwest, and a variety of interesting speakers have been invited to share their M&M presentations with you. Further details can be found on the M3S website under Meetings:

http://www.midwestmicroscopy.org/

Please plan to attend this informative program and meet with your local colleagues and vendors. Contact Karl Hagglund (secretary-at-midwestmicroscopy.org) for details and to RSVP.


Elaine Schumacher
(on behalf of M3S)

Elaine F. Schumacher | Senior Research Scientist
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From: microscopy.listserver-at-gmail.com
Date: Thu, 5 Nov 2015 18:03:16 -0600
Subject: [Microscopy] =?UTF-8?Q?viaWWW:EVOS=c2=ae_FL_Auto_configuration?=

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Title-Subject: [Filtered] EVOSŽ FL Auto configuration

Message: Could some one help me with the configuration of the EVOSŽ FL Auto, cat numbers,etc
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From: microscopy.listserver-at-gmail.com
Date: Thu, 5 Nov 2015 18:04:07 -0600
Subject: [Microscopy] viaWWW:Bell Bright Spray

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Title-Subject: [Filtered] Bell Bright Spray

Message: Has anyone found a replacement for Bell Bright Spray from SPI? I just found out it is
discontinued (OK, I had a pretty large stockpile!) It sure made cleaning the bell jar from our
vacuum evaporator easier.

TIA

Matt

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From: glenmac-at-u.washington.edu
Date: Mon, 9 Nov 2015 10:32:14 -0600
Subject: [Microscopy] Vector substrate kit disposal

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Evaporate some rock salt after cleaning the bell jar.

John Mardinly, ASU


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} Title-Subject: [Filtered] Bell Bright Spray
}
} Message: Has anyone found a replacement for Bell Bright Spray from SPI? I just found out it is
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From ohn.bullocknewsmjpok-at-gmail.com Fri Nov 6 20:31:37 2015
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Message-ID: {79874E03.A100FCC3-at-gmail.com}

HI,
I”m decomissioning a lab refrigerator and came across 4 substrate kits from Vector Laboratories. Their documentation only tells me the concentration of solvents in “Reagent 3” in each of the kits, which I suspect contains the actual chromogenic substrate. But, the docs do not tell which reagent bottle, nor identifies the substrate. Most of the 3-4 reagent bottles have colored contents.

Unfortunately, our hazardous waste office won’t take the solvents unless I can tell them what else is in them.
Its been decades since I’ve worked with enzymatic labeling and forgotten most details of chromogenic substrates. Does anyone have an idea what is in these kits? Vector just told me to pool the substrates and hand them off. I understand their proprietary interests, but disposal of unknowns is costly.
SK-3100 Peroxidase VIP
SK-3200 Alkaline Phosphatase Kit II
SK-4600 Glucose Oxidase Kit I
SK-5200 Glucose Oxidase Kit II


thanks.
Glen MacDonald
Core for Communication Research
Virginia Merrill Bloedel Hearing Research Center
Cellular Morphology Core
Center on Human Development and Disability
Box 357923
University of Washington
Seattle, WA 98195-7923 USA
(206) 616-4156
glenmac-at-uw.edu








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From: zaluzec-at-microscopy.com
Date: Tue, 10 Nov 2015 02:18:05 -0600
Subject: [Microscopy] viaWWW:Manual for a Polaron Carbon Evaporation Power Supply

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Email: henrik.kaker-at-guest.arnes.si
Name: Henrik Kaker

Organization: SEM-EDS Lab, Metal Ravne, Slovenia

Title-Subject: [Filtered] Manual for a Polaron Carbon Evaporation Power
Supply

Message: Dear All,

Does anyone have a manual for a Polaron Carbon Evaporation Power Supply.
Please see the link, http://www.kaker.com/test/polaron.jpg. Thank you.

Regards,

Henrik

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From: news3409384-at-gmail.com
Date: 10 Nov 2015 11:27:41 +0200
Subject: re: Stable Fanpage FB Likes

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Name: Heather Lowers

Organization: USGS

Title-Subject: [Filtered] Colorado Microbeam Meeting

Message: Hello Area Microscopists and Microanalysts

The fall meeting of the Mountain States Society of Electron
Microscopists and Colorado Microbeam Analysis Society (MSSEM/CMAS) has
been set. Please plan to join us!

Wednesday December 9, 2015 from 6:00 PM to 9:00 PM

CB & Potts (on Collindale Golf Course) -- southwest style buffet and
cash bar
1441 East Horsetooth Road
Fort Collins, CO 80525
Carpool opportunities available from west Denver area

INVITED SPEAKERS
Dr. Andreas Hoenger, University of Colorado
"Cryo-EM studies on Microtubule-MAP interactions in vitro and in situ"

Dr. Ai Leen Koh, Stanford University
"In Situ and Environmental High Resolution Electron Microscopy of
Material Reactions"

POSTERS
Posters of current research by students and professionals are invited.
Please submit poster abstracts to hlowers-at-usgs.gov by December 6.

RSVP by December 6 to hlowers-at-usgs.gov
$30 nonmember
$20 MSSEM/CMAS member
$10 student

Please send payment to and make check out to
MSSEM/CMAS
C/O John Chandler
423 Buckeye St.
Fort Collins, CO 80524

In addition to the meeting,Gatan and JEOL are hosting a free workshop
December 9 and 10 from 9:00 AM to 5:00 PM at Colorado State University.
Wednesday's focus will be on in-situ EM with heating and tomography and
Thursday's will be on STEM diffraction imaging.

More details will soon be available on the MSSEM/CMAS website
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From: benada-at-biomed.cas.cz
Date: Tue, 10 Nov 2015 03:38:19 -0600
Subject: [Microscopy] Re: viaWWW:Manual for a Polaron Carbon Evaporation

Contents Retrieved from Microscopy Listserver Archives
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by ns.microscopy.com (8.12.11.20060308/8.12.8) with ESMTP id tAA9cJ0J007223
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Tue, 10 Nov 2015 03:38:19 -0600

Hi All,
I've just sent a PDF copy of the manual to Henrik. If anyone is
interested in this PDF, I can share it on our server (~2.9 MB).

Best regards Oldrich

--
Oldrich Benada
Institute of Microbiology CAS, v.v.i.
Videnska 1083
142 20 Prague 4
Czech Republic

On Tue, 10 Nov 2015 02:24:38 -0600, zaluzec-at-microscopy.com wrote :
}
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} using the WWW based Form at http://www.microscopy.com/MLFormMail.html
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} Microscopy Listserver
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} Email: henrik.kaker-at-guest.arnes.si
} Name: Henrik Kaker
}
} Organization: SEM-EDS Lab, Metal Ravne, Slovenia
}
} Title-Subject: [Filtered] Manual for a Polaron Carbon Evaporation
} Power Supply
}
} Message: Dear All,
}
} Does anyone have a manual for a Polaron Carbon Evaporation Power
} Supply. Please see the link, http://www.kaker.com/test/polaron.jpg.
} Thank you.
}
} Regards,
}
} Henrik
}
} Login Host: 193.189.163.74
} Listserver Email Form V - 20120416
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} system. You should send a new message to
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}
} ==============================Original
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From: benada-at-biomed.cas.cz
Date: Tue, 10 Nov 2015 04:29:21 -0600
Subject: [Microscopy] viaWWW:Manual for a Polaron Carbon Evaporation

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Rick,
Here is the link:

{http://www2.biomed.cas.cz/~benada/Polaron_E5100-374.pdf}

Best regards from Prague,

Oldrich

On Tue, 10 Nov 2015 10:19:52 +0000, Rick Hughes
{rick.hughes-at-microanalysis.com.au} wrote :
} Yes please. We operate an old Polaron carbon evaporative coater. It
} must be close to 30 years old and still going strong.
}
}
} Rick Hughes, B.Sc.(Hons) Physics, MAIP, MAICD
} Managing Director and Principal Consultant
}
} [Description: microanalysis_logo_12.5%.jpg]
} [EmailSignature_Finalist_Blue]
}
} Suites 5 & 6, 642 Albany Highway, Victoria Park, WA 6100
} M: 040 777 1447
} P: +61 8 9472 4880
} E:
} rick.hughes-at-microanalysis.com.au {mailto:rick.hughes-at-microanalysis.com.au}
} W: www.microanalysis.com.au {http://www.microanalysis.com.au/}
} [facebook4] https://www.facebook.com/microanalysisaustralia
}
} -----Original Message-----
} From: benada-at-biomed.cas.cz [mailto:benada-at-biomed.cas.cz]
} Sent: Tuesday, 10 November 2015 5:59 PM
} To: Rick Hughes
} Subject: [Microscopy] Re: viaWWW:Manual for a Polaron Carbon
} Evaporation
}
}
}
}
}
}
}
}
}
} ----------------------------------------------------------------------------
}
} The Microscopy ListServer -- CoSponsor: The Microscopy Society of
} America To Subscribe/Unsubscribe --
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}
} On-Line Help http://www.microscopy.com/MicroscopyListserver/FAQ.html
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} ----------------------------------------------------------------------------
}
}
}
} Hi All,
}
} I've just sent a PDF copy of the manual to Henrik. If anyone is
} interested in this PDF, I can share it on our server (~2.9 MB).
}
}
}
} Best regards Oldrich
}
}
}
} --
}
} Oldrich Benada
}
} Institute of Microbiology CAS, v.v.i.
}
} Videnska 1083
}
} 142 20 Prague 4
}
} Czech Republic
}
}
}
} On Tue, 10 Nov 2015 02:24:38 -0600,
} zaluzec-at-microscopy.com {mailto:zaluzec-at-microscopy.com} wrote :
}
} }
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9, 47 -- From: Oldrich Benada {benada-at-biomed.cas.cz}
9, 47 -- To: Rick Hughes {rick.hughes-at-microanalysis.com.au} ,
9, 47 -- {microscopy-at-microscopy.com}
9, 47 -- Subject: Re: [Microscopy] Re: viaWWW:Manual for a Polaron Carbon Evaporation
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From: lamiller-at-illinois.edu
Date: Tue, 10 Nov 2015 08:21:30 -0600
Subject: [Microscopy] Congratulations to our student/Post Doc competition winners!

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Re: Materials Research Laboratory Fall conference student and post doc presentation competition winners



At our fall conference, we encourage students from all institutions to compete with a poster and a 15 minute presentation.

We are happy to announce this year’s winners!


Student Category - Boeckeler Instruments Award: Enrique Daza of Dr Dipanjan Pan’s Group


Post Doc Category: Jui-Nung Liu of Dr. Brian Cunningham’s Group



You can see the winners on box.com: https://uofi.box.com/signup/collablink/d_5328391693/7480ca9d6da97


You can check out their work at their group websites:

http://pan.bioengineering.illinois.edu/people/
http://nano.ece.illinois.edu/index.html


Congratulations to our winners, next year, there will be an invite to students from any institution to participate.






{ { { { { { { { { { { { { { { { {} } } } } } } } } } } } } } } }
Lou Ann Miller
Biological Electron Microscopy
Frederick Seitz Materials Research Laboratory
Lab Room 125 Office 374 MRL
104 South Goodwin Ave
Urbana, IL 61801
Campus mail code: MC-230
Hours: 7am-3:30 pm

217-244-1567
lamiller-at-illinois.edu
http://mrl.illinois.edu



==============================Original Headers==============================
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From: etranfield-at-igc.gulbenkian.pt
Date: Tue, 10 Nov 2015 09:19:06 -0600
Subject: [Microscopy] Managing Humidity in EM Facilities

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All

Have you designed a facility in a humid city? If yes, can you please help me?

We are currently planning an expanded EM Facility - the sticking point is humidity control.

Our building maintenance / construction team want to know how other EM facilities regulate humidity in rooms with fumehoods. They have the logical comment that it is energy expensive to dehumidify air that is then pumped into a room with fumehoods because the fumehoods just pump the air out. I understand that - however doing sample prep in a space with 80% humidity is causing us a lot of problems. It is virtually impossible to keep our liquid nitrogen ice free and despite our best efforts we have a horrendously high sample mortality rate. We need to reduce the humidity.

And so we are looking for guidance on innovative solutions others have found. At this point any ideas, or comments are most welcome!

Thank-you for your time
Erin


_________________________________
DrÂŞ Erin Tranfield
Head of the Electron Microscopy Facility
Instituto Gulbenkian de CiĂŞncia
Rua da Quinta Grande, 6
2780-156 Oeiras, Portugal
Tel: +351 21 446 4691
e-mail: etranfield-at-igc.gulbenkian.pt
http://uic.igc.gulbenkian.pt/emf.php

==============================Original Headers==============================
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From: bigelow-at-umich.edu
Date: Tue, 10 Nov 2015 20:59:40 -0600
Subject: [Microscopy] help

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Does anyone know the telephone number or e-mail address of Viced
Carlino? I apologize for bothering the List, but I need to get in
touch with him.

Thanks

Wil Bigelow
bigelow-at-umich.edu

==============================Original Headers==============================
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From: steven.spurgeon-at-pnnl.gov
Date: Wed, 11 Nov 2015 13:21:27 -0600
Subject: [Microscopy] Importing EELS reference into Digital Micrograph

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello everyone,

I have a reference EELS spectrum that I’ve collected from the literature and I would like to import it into Digital Micrograph so that I can use it in MLLS fitting. The spectrum is in a two-column CSV file (Energy Loss and Counts) and I am not sure about how to get it into the program. What is the best way to do this?

Thanks!
______________________________________
Steven R. Spurgeon, Ph.D.
Postdoctoral Research Associate
Physical and Computational Sciences Directorate

Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999 MSIN:K8-87
Richland, WA 99352

Tel: +1-509-371-7123
steven.spurgeon-at-pnnl.gov
www.stevenspurgeon.com {http://www.stevenspurgeon.com/}
www.pnnl.gov {http://www.pnnl.gov/}


==============================Original Headers==============================
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From: DusevichV-at-umkc.edu
Date: Thu, 12 Nov 2015 11:37:34 -0600
Subject: [Microscopy] Managing Humidity in EM Facilities

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Fume hoods should be closed when not in use, i.e. most of the time. So, they do not pump air out.

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Director
(816) 235-2072
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

-----Original Message-----
X-from: etranfield-at-igc.gulbenkian.pt [mailto:etranfield-at-igc.gulbenkian.pt]
Sent: Tuesday, November 10, 2015 9:21 AM
To: Dusevich, Vladimir

Dear All

Have you designed a facility in a humid city? If yes, can you please help me?

We are currently planning an expanded EM Facility - the sticking point is humidity control.

Our building maintenance / construction team want to know how other EM facilities regulate humidity in rooms with fumehoods. They have the logical comment that it is energy expensive to dehumidify air that is then pumped into a room with fumehoods because the fumehoods just pump the air out. I understand that - however doing sample prep in a space with 80% humidity is causing us a lot of problems. It is virtually impossible to keep our liquid nitrogen ice free and despite our best efforts we have a horrendously high sample mortality rate. We need to reduce the humidity.

And so we are looking for guidance on innovative solutions others have found. At this point any ideas, or comments are most welcome!

Thank-you for your time
Erin


_________________________________
DrÂŞ Erin Tranfield
Head of the Electron Microscopy Facility Instituto Gulbenkian de CiĂŞncia Rua da Quinta Grande, 6
2780-156 Oeiras, Portugal
Tel: +351 21 446 4691
e-mail: etranfield-at-igc.gulbenkian.pt
http://uic.igc.gulbenkian.pt/emf.php

==============================Original Headers==============================
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From: kraftpiano-at-gmail.com
Date: Thu, 12 Nov 2015 15:37:59 -0600
Subject: [Microscopy] Crystals from a wine cork

Contents Retrieved from Microscopy Listserver Archives
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Hello all,

Recently, I decided to take the end of a red wine cork and put it into the SEM. I found these crystals, which I believe to be tartaric acid crystals (Although I wouldn’t mind some confirmation.) There seems to be a residue of some kind on the surface, and I was wondering if anyone on the list could tell me if it looks like sample prep contamination, or if it is something different altogether?

The images I took (Which aren’t the best, but they serve the purpose of a quick glance) are here: http://www.jkraft.net/red-wine-1.jpg and http://www.jkraft.net/red-wine-2.jpg

Thanks in advance for the replies!

—Justin A. Kraft

==============================Original Headers==============================
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From: ph2-at-sprynet.com
Date: Thu, 12 Nov 2015 20:54:06 -0600
Subject: [Microscopy] Crystals from a wine cork

Contents Retrieved from Microscopy Listserver Archives
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Justin:

Per the presentation I sent you off-line. It could be:

1A
Potassium hydrogen tartrate is a major instability in wines
• aka Potassium acid tartrate
• aka Potassium bitartrate
• aka KHT or C4H4O6HK
or
1B
Potassium Tartrate Hemihydrate

Or

2A
Calcium d‐tartrate tetrahydrate
Or
2B
Calcium d‐tartrate hexahydrate


Check the elemental composition by EDX and the Refractive indices and crystal characteristics by polarized light microscopy using the data I sent.


Tony

……………………………………………………………………………………………………………
Andrew Anthony “Tony” Havics, CIH, PE
Environmental, Health & Safety, Microscopy, Materials Science & Forensic Engineering
pH2, LLC
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-----Original Message-----
X-from: kraftpiano-at-gmail.com [mailto:kraftpiano-at-gmail.com]
Sent: Thursday, November 12, 2015 4:53 PM
To: ph2-at-sprynet.com

Hello all,

Recently, I decided to take the end of a red wine cork and put it into the SEM. I found these crystals, which I believe to be tartaric acid crystals (Although I wouldn’t mind some confirmation.) There seems to be a residue of some kind on the surface, and I was wondering if anyone on the list could tell me if it looks like sample prep contamination, or if it is something different altogether?

The images I took (Which aren’t the best, but they serve the purpose of a quick glance) are here: http://www.jkraft.net/red-wine-1.jpg and http://www.jkraft.net/red-wine-2.jpg

Thanks in advance for the replies!

—Justin A. Kraft

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From: zaluzec-at-microscopy.com
Date: Fri, 13 Nov 2015 03:05:39 -0600
Subject: [Microscopy] viaWWW:Canada Balsam on old glass slide

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Name: Tom Williams

Organization: Univ of Idaho

Title-Subject: [Filtered] Canada Balsam on old glass slide

Message: Greetings,

Here's a "blast from the past" question. I have a set of 100+ year old
petrographic [glass] thin section slide [sections are from the Vermont
talc district...fascinating]. Sample and coverslip mounted with Canada
Balsam. We need to remove the coverslip for SEM and EPMA without also
destroying the sample. Tried gentle heating of the slide which softened
the slip AND dislodged the sample. No joy. Wondering if anyone had
experience or helpful suggestions??

Thanks!

Tom


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From: microscopy.listserver-at-gmail.com
Date: Fri, 13 Nov 2015 06:01:08 -0600
Subject: [Microscopy] viaWWW:Canada Balsam on old glass slide

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

X-from: Maria Castello {maritacastello-at-gmail.com}


Hello Just immerse the slides in Xilol. Italia will taken some time
until the
bĂĄlsamo dissolves.
Good luck!
Marita

El 13/11/2015 07:20, {zaluzec-at-microscopy.com
{mailto:zaluzec-at-microscopy.com} } escribiĂł:





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Email: tomw-at-uidaho.edu {mailto:tomw-at-uidaho.edu}
Name: Tom Williams

Organization: Univ of Idaho

Title-Subject: [Filtered] Canada Balsam on old glass slide

Message: Greetings,

Here's a "blast from the past" question. I have a set of 100+ year old
petrographic [glass] thin section slide [sections are from the Vermont
talc district...fascinating]. Sample and coverslip mounted with Canada
Balsam. We need to remove the coverslip for SEM and EPMA without also
destroying the sample. Tried gentle heating of the slide which
softened
the slip AND dislodged the sample. No joy. Wondering if anyone had
experience or helpful suggestions??

Thanks!

Tom


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From: news3409384-at-gmail.com
Date: 14 Nov 2015 13:51:58 +0200
Subject: how to Increase keywords ranks fast

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Name: Lita Duraine

Organization: Howard Hughes Medical Institute

Title-Subject: [Filtered] Duct socks

Message: Hi All,
I am looking for an old-fashioned type fabric duct sock that can be
installed on a suspended ceiling tile. I have looked online but seem to
only find the cylinder type.

These are the type that microscopists used to use to control dust and
air flow issues inside microtomy stations. They used to have a square
metal frame with fabric that hung down like a sock. Does anyone know
where one can buy these anymore?

Thank you,

Lita Duraine

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From: john_elzey-at-hotmail.com
Date: Sat, 14 Nov 2015 15:31:52 -0600
Subject: [Microscopy] Re: Managing Humidity in EM Facilities

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Hi Erin,

My experience is primarily with cleanrooms.  They require more control than you likely need - but this may help.

Generally, dehumidifiers in conjunction with humidifiers are used to adjust relative humidity in controlled environments.  Despite inefficiencies, relative humidity in cleanrooms I "built" with several fume hoods can be controlled to say 40.0 +/- 0.5 % - that's a commonly used range for cleanrooms.  Not too low for breathing and electrostatic discharge and not too high for condensation related issues like you are referring to (ice in liq. N2).  Changing relative humidity during the 24 hour day and seasonal variation can really cause technical issues (variation in sample oxidation, condensation, evaporation rates, optics, etc.) without proper control.

Depending on the size of the controlled area there are a variety of appropriate solutions.

Examples, not endorsements, of equipment manufacturers are Munters for dehumidifiers, Condair for humidifiers.  If control is what you need, equipment like this needs to be used together and integrated with very good room temperature control schemes - or it could rain inside the lab!

Hope this gives you some ideas.

John

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From: colijn.1-at-osu.edu
Date: Sat, 14 Nov 2015 16:37:07 -0600
Subject: [Microscopy] Re: viaWWW:Duct socks

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Hi Lita,

We use the product from DuctSox (www.ductsox.com). I believe that all
their products are custom made, so you should be able to get what you
need. Talk to one of their salesmen or reps. I would encourage you to
make sure the air going into the DuctSox is well filtered unless you
want to wash the sox weekly!

No financial interest, just a customer.

Cheers,
Henk


On 11/14/2015 3:38 AM, zaluzec-at-microscopy.com wrote:
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} I am looking for an old-fashioned type fabric duct sock that can be
} installed on a suspended ceiling tile. I have looked online but seem to
} only find the cylinder type.
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} These are the type that microscopists used to use to control dust and
} air flow issues inside microtomy stations. They used to have a square
} metal frame with fabric that hung down like a sock. Does anyone know
} where one can buy these anymore?
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Hendrik O. Colijn

*C*enter for *E*lectron *M*icroscopy & *A*nalysi*S*

The Ohio State University

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colijn.1-at-osu.edu {mailto:colijn.1-at-osu.edu} 614.643.3458 Office

cemas.osu.edu

"Time is that quality of nature which keeps things from happening all at
once. Lately it doesn't seem to be working."


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From: diaspro-at-fisica.unige.it
Date: Sun, 15 Nov 2015 01:17:12 -0600
Subject: [Microscopy] Genoa 1-4 december Advanced Microscopy at Diaspro Lab - no fees

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html




———
On december 2015 1-4 2nd Practical Workshop on Advanced Microscopy -at- www.nic.iit.it
Confirmed speakers: Sara Abrahamsson, Martin Oheim, Silvia Galiani, Chiara Cordiglieri, Colin JR Sheppard, Laura Cancedda, Luca Lanzano, Gail McConnell
First day: open access talks (14-19) at Sala delle Grida, Genoa City Center, De Ferrari metro station. Following days: practicals, only 30 seats available at Nikon Imaging Center at IIT, Morego.
NO registration fee. Mandatory regsitration for Practicals, no fee, applicants served on a first in first out basis. Visit also www.nic.iit.it for possible updates.

Registrations: email to alberto.diaspro-at-iit.it AND lauretta.galeno-at-iit.it - subject (mandatory “2nd NIC Workshop 2015”)

Final program link: http://www.nic.iit.it/wp-content/uploads/2015/11/r-Flyer-2nd-NIC-IIT-14NOV2015.pdf
-----------


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From: dhobart-at-vt.edu
Date: Sun, 15 Nov 2015 15:41:33 -0600
Subject: [Microscopy] EDX - looking for collimator for Thermo EDX detector

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Good evening folks, I’m looking for a replacement collimator for a Thermo EDX detector, model number 5515E-1SUS-SN. Mine seems to have misplaced itself and I cannot find it anywhere. Would anyone have a spare they might part with, or have a lead as to where I might find a replacement?

Thanks!


David Hobart, Ph.D.c
Visiting Professor in Chemistry
117 Surge Building
Virginia Tech Department of Chemistry
Blacksburg, VA 24061
dhobart-at-vt.edu
ph. (540) 231-6837






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From: jtwilley-at-sprynet.com
Date: Mon, 16 Nov 2015 01:25:27 -0600
Subject: [Microscopy] Re: viaWWW:Canada Balsam on old glass slide

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

You may find that the dissolution is more thorough and faster to do this in two stages, where the first involves some fresh Canadian balsam dissolved in solvent and the second employs fresh solvent alone. Although counter-intuitive, this is often the fastest way to remove aged or thermally degraded resins by pulling the solubility parameters of the solvent closer to those of the target material. This also might allow you to get effective cleaning without recourse to xylene, using a solvent such as ethanol or isopropanol with fewer health issues.

John Twilley
Conservation Scientist


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From: wpchan-at-uw.edu
Date: Mon, 16 Nov 2015 13:35:56 -0600
Subject: [Microscopy] Fwd: collagen fiber TEM prep

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear All,

We have done several conventional TEM processings of Staph aureus bacteria. We are getting moon shaped bacteria which we presume to be an artifact given that these are healthy, wild type control bacteria that should be round. If you would like a picture, please let me know and I can send one.

Roughly outlined our processing protocol is:
- when bacteria are at appropriate stage (as defined by research group) the group fixes the bacteria in their lab with a PFA / Glut fixation in phosphate buffer (overnight, in fridge)
- pellet bacteria, rinse out fixative, add low melting point agarose that is just warm enough to be liquid, mix with bacteria
- solidly agarose on ice, divide sample into small cubes while in phosphate buffer (to prevent sample from drying out)
- stain with tannic acid, 1hr, room temp
- post-fix with 1% Osmium tetroxide, 1 hr on ice
- en-block stain with UA, 1hr, room temp, in the dark
- dehydrate 30% 50%, 75% (overnight), 90%, 100% x 3
- infiltrate gradually into EPON, embed, into oven for 24 hrs for resin to harden

I would appreciate any help to identify what could cause this Moon shape. I suspect the artifact happens before the agarose step because the agarose in the background appears to follow the moon shape but perhaps there is some secret to processing gram positive bacteria that can easily explain this artifact.

I have also had discussions with these scientists about trying HPF / FS. If anyone has suggestions for the cocktail and the processing duration I would be most interested to know.

Thank-you again for your help
Kind regards
Erin


_________________________________
DrÂŞ Erin Tranfield
Head of the Electron Microscopy Facility
Instituto Gulbenkian de CiĂŞncia
Rua da Quinta Grande, 6
2780-156 Oeiras, Portugal
Tel: +351 21 446 4691
e-mail: etranfield-at-igc.gulbenkian.pt
http://uic.igc.gulbenkian.pt/emf.php


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From improve.alexa.ranks-at-gmail.com Mon Nov 16 11:05:03 2015
Return-Path: {improve.alexa.ranks-at-gmail.com}
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by ns.microscopy.com (8.12.11.20060308/8.12.8) with ESMTP id tAGH50f9009885
for {microscopylistserverarchive5-at-microscopy.com} ; Mon, 16 Nov 2015 11:05:01 -0600
Reply-To: improve.alexa.ranks-at-gmail.com

Hi fellow microscopists

One of our users is planning to look at x-section diameter of collagen
fibril in human peridontal ligament. However, he cannot put the tissue
into the usual mix aldehyde EM fixative right away.There is most
likely a few hours in transit between tissue harvest and arrival at
the lab. What would be a good compromise procedure? I can think of the
following but your advice will be much appreciated.

1. Will ice cold buffered saline during transit slow down autolysis
enough to get reasonable ultrastucture?

2. I found a Nature Protocols paper on the use of buffered formalin
when EM fix is not available and it also recommend to transfer to
glutaraldehyde as soon as possible. However, will the small amount of
methanol in formalin affect the size of collagen fibrils?

Graham, Lesley, and Jan Marc Orenstein. “Processing Tissue and Cells
for Transmission Electron Microscopy in Diagnostic Pathology and
Research.” Nature Protocols 2, no. 10 (October 2007): 2439–50.
doi:10.1038/nprot.2007.304.

3. Freezing is probably a bad idea for ultrastructure preservation but
will it affect the size of collagen fibrils?

Thanks a lot!

--
Pang (Wai Pang Chan, wpchan-at-uw.edu, PAA A087, 206-685-1519)
The Biology Imaging Facility (http://depts.washington.edu/if/)


==============================Original Headers==============================
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9, 43 -- Subject: Fwd: collagen fiber TEM prep
9, 43 -- From: Wai Pang Chan {wpchan-at-uw.edu}
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From: crimp-at-egr.msu.edu
Date: Mon, 16 Nov 2015 14:30:30 -0600
Subject: [Microscopy] Postdoctoral Position Available

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html



I have am seeking a postdoctoral researcher to carry out studies in the
area of electron channeling contrast imaging (ECCI). The postdoc will
be responsible for performing ECCI characterization of dislocation
morphologies in a wide range of materials, with an emphasis on
nanoindentation structures. Qualified candidates should have strong
backgrounds in SEM and TEM crystallographic analysis techniques, such as
diffraction contrast TEM, electron backscattered diffraction (EBSD), or
electron channeling, as well as experience with focused ion beam (FIB)
sectioning. The duration of the position will be 1-2 years. Interested
candidates should contact me directly via email at crimp-at-egr.msu.edu.
Please share this information with anyone you think might have an
interest in this position.


Martin Crimp, Professor
Dept. Chemical Engineering and Materials Science
Michigan State Universitymi
East Lansing, MI 48823
(517) 355-0294


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From: Manual.Link.Pyramid-at-cdn.rongdexuan.cn
Date: 19 Nov 2015 09:41:41 +0200
Subject: Safely and Naturally increase keywords ranks

Contents Retrieved from Microscopy Listserver Archives
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I have worked with collagen (type 1) in teeth stored for months in a buffer or just saline before fixation, have not seen visible changes; banding pattern was good. But I have not measured diameter of fibers. Collagen is a tough thing, I believe (just believe...) delay of a few hours with fixation will not harm it.

Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Director
(816) 235-2072
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

-----Original Message-----
X-from: wpchan-at-uw.edu [mailto:wpchan-at-uw.edu]
Sent: Monday, November 16, 2015 1:37 PM
To: Dusevich, Vladimir

Hi fellow microscopists

One of our users is planning to look at x-section diameter of collagen fibril in human peridontal ligament. However, he cannot put the tissue into the usual mix aldehyde EM fixative right away.There is most likely a few hours in transit between tissue harvest and arrival at the lab. What would be a good compromise procedure? I can think of the following but your advice will be much appreciated.

1. Will ice cold buffered saline during transit slow down autolysis enough to get reasonable ultrastucture?

2. I found a Nature Protocols paper on the use of buffered formalin when EM fix is not available and it also recommend to transfer to glutaraldehyde as soon as possible. However, will the small amount of methanol in formalin affect the size of collagen fibrils?

Graham, Lesley, and Jan Marc Orenstein. “Processing Tissue and Cells for Transmission Electron Microscopy in Diagnostic Pathology and Research.” Nature Protocols 2, no. 10 (October 2007): 2439–50.
doi:10.1038/nprot.2007.304.

3. Freezing is probably a bad idea for ultrastructure preservation but will it affect the size of collagen fibrils?

Thanks a lot!

--
Pang (Wai Pang Chan, wpchan-at-uw.edu, PAA A087, 206-685-1519) The Biology Imaging Facility (http://depts.washington.edu/if/)


==============================Original Headers==============================
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From: microscopy.listserver-at-gmail.com
Date: Thu, 19 Nov 2015 02:13:58 -0600
Subject: [Microscopy] Fwd: viaWWW:Utilization of calibration standards

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Email: calixtoa1988-at-gmail.com
Name: Calixto Acencio

Title-Subject: [Filtered] Utilization of calibration standards

Message: Dear All,

We are trying to setup a formal QC system in our SEM lab. The issue I am
facing is that I cannot find “stablished” protocols for calibrating the
detectors. There are in the market some contrast standards, resolution
standards, etc. but I is not clear to me how are they supposed to be used.
Could someone here advise or point me where to look ?

Big Thanks

Calixto


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From: zaluzec-at-microscopy.com
Date: Thu, 19 Nov 2015 02:16:47 -0600
Subject: [Microscopy] viaWWW:Colorado State University Workshop: High Speed Imaging for

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Email: jhyun-at-gatan.com
Name: John Hyun

Organization: Gatan, Inc.

Title-Subject: [Filtered] Colorado State University Workshop: High Speed
Imaging for In-situ TEM and STEM Diffraction

Message: If you are in the Colorado area and perform in-situ TEM and/or
S/TEM diffraction, we invite you to attend this unique session featuring
the latest high speed imaging technology and applications.

December 9 (8:30 a.m. – 5:00 p.m.): Investigators will present and
demonstrate recent developments in high speed digital cameras and
applications for in-situ TEM and tomography.
December 10 (8:30 a.m. – 5:00 p.m.): We will discuss various
methods using electron diffraction for crystallographic characterization
of materials. This will include presentations on S/TEM diffraction
techniques and live demonstrations of 4D-STEM diffraction applications
using high performance cameras.

Daily registration will be from 8:45 – 9:15 a.m. and will include coffee
and doughnuts. Lectures start at 9:15 a.m. and lunch will be served
daily. Registration, all lectures, and meals will be held in the Yates
EM Lab, Room 102.

We also invite you to the concurrent Mountain States Society of Electron
Microscopists & Colorado Microbeam Analysis Society Annual Fall Meeting
at 6:00 – 9:00 p.m., December 9, 2015. This is an informal social
gathering of microscopists from local institutions and companies. Also
remember, it is prime ski season in Colorado! So it is a great
opportunity to enjoy a special microscopy event and the outdoors of
Colorado. We hope to see you there!

Online registration:
http://info.gatan.com/acton/form/11413/005a:d-0001/0/-/-/-/-/index.htm



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From: microscopy.listserver-at-gmail.com
Date: Thu, 19 Nov 2015 02:20:08 -0600
Subject: [Microscopy] viaWWW:Diamond Knife woes!

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Email: duraine-at-bcm.edu
Name: Lita Duraine

Organization: Howard Hughes Medical Institute

Title-Subject: [Filtered] Diamond Knife woes!

Message: Hi All in microscopy land,

Lately we have had a hard time getting our Diatome diamond knives
re-sharpened correctly from Diatome. We usually send sets of three at a
time for the re-sharpening service. The last three times though, we have
had to send back our knives after waiting for three months, because of
either epoxy problems in the boat, nicks still in the knives, or some
kind of equidistant tooling marks. We have even tried exchanging the
knives for new ones, but once they need sharpening again, some of these
problems start all over again.

Have any of you had the same problems and if so, are there any other
companies out there that can offer better sharpening service...hopefully
without buying all new knives? Any experience with Ted Pella?

I appreciate it,

Lita Duraine

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From: leunissen-at-aurion.nl
Date: Thu, 19 Nov 2015 13:53:08 -0600
Subject: [Microscopy] Re: viaWWW:Diamond Knife woes!

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Dear Lita,

May I suggest you get in touch with Helmut Gnaegi from Diatome. He is not only extremely knowledgeable but also very very helpful and takes great pride in the quality of Diatome knives. I am certain almost everyone here on the Listserver would agree.

His email address is helmut.gnaegi-at-diatome.ch.

I have no commercial interest in Diatome (unfortunately…).

Good luck,

Jan Leunissen
Aurion

Dunedin, New Zealand.

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From: microscopy.listserver-at-gmail.com
Date: Wed, 25 Nov 2015 06:16:27 -0600
Subject: [Microscopy] viaWWW:4Pi system

Contents Retrieved from Microscopy Listserver Archives
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Hi,

I was wondering if anyone on this list has the manual(s) for a FEI FIB
800 Focused Ion Beam system.

I'm specifically looking for the part that describes the
GIS ports and the part with the technical details including size and
dimensions of the (1) columns assembly, (2) the table and (3) the rack.

Thank you and best regards,
Stefan

==============================Original Headers==============================
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From infoirlee-at-asia.com Wed Nov 25 04:41:53 2015
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Email: cvierret-at-mst.edu
Name: Clarissa Wisner

Organization: Missouri University of Science and Technology

Title-Subject: [Filtered] 4Pi

Message: We have had a 4Pi system on our Hitachi S570 and it stopped working about two months ago.
We have been trying to get it up and running but we have not had much success. We have been in
touch with the previous owners of 4Pi and are working on alternatives. At this point we are asking
if any one in the microscopy community has a 4Pi box that they are no longer using that could be
acquired in a minimal charge. Please respond to me directly, cvierret-at-mst.edu, as I rarely check
the list server.

Thanks
Clarissa

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From: microscopy.listserver-at-gmail.com
Date: Wed, 25 Nov 2015 07:35:48 -0600
Subject: [Microscopy] viaWWW:Microscope camera resolution

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X-from: Barrie.Wells-at-ConwyValley.com

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Email: Barrie.Wells-at-ConwyValley.com
Name: Barrie Wells

Organization: Conwy Valley Systems Limited

Title-Subject: [Filtered] Microscope camera resolution

Message: When collecting images for creating a (stitched) mosaic of a sample (thin section or
polished block), are there reasons for using a high resolution camera with a low magnification
objective as opposed to a low resolution camera with a high magnification objective?
Are there general principles that apply to all cameras or is it too specific, depending on the
camera's sensor, phototube optics, etc.?
I would expect there to be reasons for keeping it simple and not using pixel-shifting cameras but is
it sensible to keep it simpler still and use the lowest resolution (i.e. cheapest) camera and
highest magnification objective? Conversely, if we have already bought a camera, is it wasting its
capabilities to be using it at lower than maximum resolution, or might we be getting a better image?
If this is a well-known problem that has been discussed in a textbook then I apologise for wasting
the list's time and will happily buy the book. Thank you for any responses,
Barrie

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From: microscopy.listserver-at-gmail.com
Date: Thu, 26 Nov 2015 07:48:51 -0600
Subject: [Microscopy] viaWWW:Quantomix capsules

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Email: tjk210-at-lehigh.edu
Name: Tia Kowal

Organization: Lehigh University

Title-Subject: [Filtered] Quantomix capsules

Message: Hi there. I'm wondering if anyone has any experience using the Quantomix WETSEM chambers.
I'm considering using them for an experiment, but since they are kind of expensive, wanted to get
some input before purchasing them. I don't need to use them for very high magnification. Any info on
good or bad experiences would be appreciated.

Thank you!

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From: microscopy.listserver-at-gmail.com
Date: Thu, 26 Nov 2015 07:50:14 -0600
Subject: [Microscopy] viaWWW: Postdoc position available @ PNNL

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Email: dongsheng.li2-at-pnnl.gov
Name: Dongsheng Li

Organization: PNNL

Title-Subject: [Filtered] Postdoc position available

Message: I like to hire a postdoc. Please see the details below.

Thanks.

Post Doctorate RA - In situ TEM study of branched nanocrystal growth mechanisms:
Job Description

Fundamental research of this project is focused on understanding the mechanisms and kinetics of
vapor-liquid-solid (VLS) and solution synthesis. Synthesis methods will involve use of mainly VLS
route (templating agents and bio-inspired processing in solution may also be included) to achieve
size and shape controllable synthesis across scales. In situ techniques (such as TEM) are the
principal technique that will be used to investigate nucleation and self-assembly and advance the
understanding of the relationship between surface structure/chemistry, pathways of formation, and
materials properties. This position requires expertise in the synthesis and structural
characterization of nanostructured materials derived from VLS techniques.

Excellent oral and written communications skills are mandatory. Other duties will include
publication of results in peer-reviewed journals, technical presentations at scientific conferences,
and development of proposals for new research projects. The candidate must be able to independently
design and carry out experiments as well as function productively as part of a multidisciplinary team.

Minimum Requirements
Candidates must have received a PhD degree within the past five years from an accredited college or
university. All staff at the Pacific Northwest National Laboratory must be able to demonstrate the
legal right to work in the United States.

Other Qualifications
• Ph.D. in physics, chemistry, materials science, or related field
• Background in experimental physics, chemical physics, or materials science
• Expertise in TEM imaging, elemental analysis, and diffraction pattern analysis
• Experience with EDS, EELS, XRD analysis
• Knowledge of Molecular dynamics and Density functional theory (optional)
• Experience with AFM-based imaging, (optional)
• Experience working with solution-based nanoparticle systems
• Strong analytical skills
• Knowledge of Crystallography
• Record of excellence in research
• Demonstrated capability to think and act independently
• Excellent written and oral communication skills
• Ability to collaborate

Apply at:
http://pnnl.jobs/richland-wa/post-doctorate-ra-in-situ-tem-study-of-branched-nanocrystal-growth-mechanisms/AE2DA9E5DC254EB7B0FE31718CA6C085/job/

Contact: Dr. Dongsheng Li, Dongsheng.li2-at-pnnl.gov


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From: SocialbookMARS.social-at-gmail.com
Date: 29 Nov 2015 07:33:07 +0200
Subject: re: SEO is not dead, get your ranks to the top

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Email: lesley.bechtold-at-jax.org
Name: Lesley Bechtold

Organization: The Jackson Laboratory

Title-Subject: [Filtered] Systems for Billing - IdeaElan

Message: Happy Thanksgiving Eve,

Has anyone implemented a core management system from the company IdeaElan? If so, would you be
willing to talk to me and a few of my colleagues about your experience with this company? They
offer billing software, work-flow management and equipment scheduling.

With thanks,

Lesley

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From hanja07656515151zr-at-gmail.com Thu Nov 26 20:38:48 2015
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From: opmills-at-mtu.edu
Date: Mon, 30 Nov 2015 14:31:26 -0600
Subject: [Microscopy] Job opportunity - S(TEM) Research Specialist

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Michigan Technological University has an opening for a Research
Specialist in scanning transmission electron microscopy S(TEM).

The person hired for this position will be required to manage and
operate a FEI Titan Themis (S)TEM and associated GIF and EDS. Instrument
operation will be for users from multiple disciplines across campus and
external to campus. In addition to managing the laboratory,
responsibilities will include assisting in the design of experiments
utilizing imaging and spectroscopic functions as well as utilization of
multiple in-situ holders. The person will be required to stimulate the
use of the equipment through educational outreach both on and off campus
and investigate the inclusion of the scope capabilities in new research
efforts. The minimum requirements for the position are a PhD in
engineering or physical science and 3 years operational experience with
the same or similar equipment to FEI Themis Titan (S)TEM with EELS/EDS.
The successful candidate will have a working knowledge of the electron
microscopy principles/physics and enthusiasm for multidisciplinary
application of the (S)TEM and related spectroscopy techniques.

A full job description and details for application are found at
https://www.jobs.mtu.edu/postings/3657

Michigan Technological University is an Equal Opportunity Educational
Institution/Equal Opportunity Employer, which includes providing equal
opportunity for protected veterans and individuals with disabilities.

--
Steve Hackney, Professor
Dept. Materials Science and Engineering
MM 501
Michigan Technological University
1400 Townsend, Houghton MI 49931
906 487 2170

--
Owen P Mills
Director, Applied Chemical and Morphological Analysis Laboratory
Michigan Technological University
1400 Townsend Dr
Houghton, MI 49931
906-369-1875
http://mcff.mtu.edu/acmal/


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From: seo.max.pack-at-gmail.com
Date: 01 Dec 2015 05:01:19 +0200
Subject: Improve keywords ranks from first month

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From: microscopy.listserver-at-gmail.com
Date: Tue, 1 Dec 2015 19:20:43 -0600
Subject: [Microscopy] viaWWW:TEM Beam energy on sample calculation

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Email: patrick.smith-at-beg.utexas.edu
Name: patrick

Organization: University of texas - austin

Title-Subject: [Filtered] TEM Beam energy on sample calculation

Message: We,re working with complex geologic samples and would like to calculate the current(dose)on
sample at a given Kev. Also the beam diameter.

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From: gilpin-at-purdue.edu
Date: Wed, 2 Dec 2015 16:14:44 -0600
Subject: [Microscopy] Imaging Facility Manager position at Purdue

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hello Colorado Area Microscopists and Microanalysts

INVITED SPEAKERS
Dr. Andreas Hoenger, University of Colorado
"Cryo-EM studies on Microtubule-MAP interactions in vitro and in situ"

Dr. Ai Leen Koh, Stanford University
"In Situ and Environmental High Resolution Electron Microscopy of
Material Reactions"

WHEN & WHERE
Wednesday December 9, 2015 from 6:00 PM to 9:00 PM
CB & Potts (on Collindale Golf Course) -- southwest style buffet and cash bar
1441 East Horsetooth Road
Fort Collins, CO 80525
Carpool opportunities available from west Denver area

RSVP by December 6 to hlowers-at-usgs.gov
$30 nonmember
$20 MSSEM/CMAS member
$10 student

Please send payment to and make check out to
MSSEM/CMAS
C/O John Chandler
423 Buckeye St.
Fort Collins, CO 80524

In addition to the meeting,Gatan and JEOL are hosting a free workshop
December 9 and 10 from 9:00 AM to 5:00 PM at Colorado State
University. Wednesday's focus will be on in-situ EM with heating and
tomography and Thursday's will be on STEM diffraction imaging.

http://comas.geoloweb.ch/events.php

~~~~~~~~~~~
Heather Lowers
Microbeam Lab
Lab: 303-236-3188
Off: 303-236-1184

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From advertisebz09ojzy-at-gmail.com Wed Dec 2 12:15:25 2015
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Listers,
Apologies for cross posting on the confocal list.

Bindley Bioscience Center is seeking an Imaging Facility Manager to contribute to establishing and to lead the Imaging Core in Purdue’s Discovery Park. The position involves establishing collaborations with faculty, staff and students to assist with biological imaging research and develop projects. Develop and implement new methodologies for routine and specialized use within the scope of scientific image capture and analysis from a variety of imaging modalities, principally in fluorescence imaging ranging from wide-field, to confocal and super-resolution scale. Other technologies include SPECT/CT, as well as other multiple modality whole animal imaging. To see the full posting and to apply, please visit: http://purdue.taleo.net/careersection/wl/jobdetail.ftl?job=1500877&lang=en

You may contact me for informal enquiries

Chris

Christopher J. Gilpin Ph.D.
Director, Life Science Microscopy Facility
Purdue University
Whistler Hall of Agriculture Research, Room S052
170 S. University St
West Lafayette, IN 47907
765-494-7750
gilpin-at-purdue.edu


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From: microscopy.listserver-at-gmail.com
Date: Wed, 2 Dec 2015 23:19:50 -0600
Subject: [Microscopy] viaWWW:Biological TEM Workshop at Georgia USA

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Email: jpshield-at-uga.edu
Name: John Shields

Organization: University of Georgia

Title-Subject: [Filtered] Biological TEM Workshop at Georgia USA

Message: The Georgia Electron Microscopy center will be having a Biological TEM workshop March 9-11,
2016. These are all day workshops designed to train anyone (students, research staff, post-docs,
faculty, etc...) on basic TEM preparation of biological samples and TEM operation. The workshop
will be held in Barrow Hall on the University of Georgia Athens campus.

Registration is limited to six people and registration is through iLabs (link at our website -
gem.uga.edu) Deadline is Feb 26.

For more information and a schedule of the workshop, visit gem.uga.edu or contact John Shields
(jpshield-at-uga.edu)

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From: microscopy.listserver-at-gmail.com
Date: Wed, 2 Dec 2015 23:21:34 -0600
Subject: [Microscopy] viaWWW:Position for research scientist in Transmission Electron

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Email: jm-at-tamu.edu
Name: Ji Ma

Organization: Department of Materials Science and Engineering, Texas A&M University

Title-Subject: [Filtered] Position for research scientist in Transmission Electron Microscopy

Message: Research Scientist Position in Transmission Electron Microscopy
Department of Materials Science and Engineering
Texas A&M University

The Department of Materials Science and Engineering is seeking a research scientist with expertise
in Transmission Electron Microscopy (TEM), with special focus on high-resolution imaging and
diffraction techniques in crystalline solids. The research scientist will work with faculty and
students within the department to carry out TEM imaging and characterization of primarily on metals
and ceramics, interpret and analyze the results, and author or co-author scientific publications.
The candidate will also supervise and mentor students on the fundamentals of TEM technique, sample
preparation, and assist them in the interpretation of results. Qualified candidates will be involved
in proposal development and writing activities.

Qualification and Experience
- Ph.D. in materials science, metallurgy, or related fields is preferred
- Strong background and expertise in electron diffraction of crystalline solids and high resolution
imaging is required
- Experience in electron back-scattered diffraction (EBSD) and atom probe tomography (APT) is not
required but encouraged
- Strong record of scientific publications is required

The Department of Materials Science and Engineering currently has 14 full time faculty, 4 faculty
with non-zero joint appointments, and 45 affiliated faculty from several departments. The number of
graduate students is currently about 140, most of whom are pursuing Ph.D.s. The department is fast
growing and the target for the department is to increase the number of full-time faculty to more
than 20 and establish an undergraduate program in the next three years; and increase to 30 faculty,
with 750 undergraduate and graduate students by 2025.

Applicants should submit a cover letter, curriculum vitae, and a list of three references (including
postal addresses, phone numbers and email addresses) at the following website:

https://www.tamengineeringjobs.com/postings/2200


For questions regarding the position, please contact:
Dr. Ji Ma
Department of Materials Science and Engineering
Texas A&M University
TAMU 3003
College Station, TX 77843-3003
E-mail: jm-at-tamu.edu

Full consideration will be given to applications received by Jan. 3, 2016.

The Texas A&M University System is affirmative action/equal opportunity employer dedicated to the
goal of building a culturally diverse and pluralistic faculty and staff committed to teaching and
working in a multicultural environment. We strongly encourage applications from women, minorities,
individuals with disabilities, and covered veterans.


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From: nizets2-at-yahoo.com
Date: Fri, 4 Dec 2015 03:17:54 -0600
Subject: [Microscopy] Ready-to-use contrasting solutions

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear colleagues,

Is it possible to purchase ready-to-use uranyle and lead salts for contrasting of ultrathin sections in TEM?
(this is for Austria so I would also need the name of the distributor in Austria)
Many thanks in advance.

Regards,
Stephane

==============================Original Headers==============================
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From: Reinhard.Rachel-at-biologie.uni-regensburg.de
Date: Fri, 4 Dec 2015 03:37:13 -0600
Subject: [Microscopy] staining solutions

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Stephane,
} ... ready‑to‑use uranyle and lead salts for contrasting of ultrathin
sections in TEM?

Yes, in Germany, this is available. For Austria: you may ask the well known
companies?
I can see your point to ask ... in some cases, this might be advantageous.
But, honestly, preparation of UAc solutions is straight forward, without any
problem; and any premade solution is MUCH more expensive than buying the solid
substance and making the stock solution yourself; buying a stock UAc = waste of
money.
For Lead acetate / citrate whatsoever: this might be a slightly different
story, although I know there are plenty of good recipes in many websites / on
many computers of kind colleagues, which are 'easy-to-do'. -- But, we found
that for many samples, after good sample prep (mostly FS, now), and digital
imaging on good sensitive cameras, you may not need Lead staining, at all ...
the question is whether medium or dark grey is sufficient or if you really need
black.
just my two cents ....
Reinhard

--
Prof. Dr. Reinhard Rachel
University of Regensburg
Centre for EM / Anatomy
Faculty of Biology & Preclin. Med.
Universitaetsstrasse 31
D-93053 Regensburg - Germany
tel +49 941 943 -2837, -1720
mail reinhard.rachel-at-biologie.uni-regensburg.de
office: VKL 3.1.29

Next microscopy conferences:
- 16th Europ Microsc Congress EMC
http://www.emc2016.fr/en/
28 Aug - 2 Sept 2016 in Lyon, FR
- Microscopy Conference 2017
Dreiländertagung Lausanne, CH
20-25 August 2017
- next Microbiol. conferences:
VAAM - Annual Conf March 13-16, 2016, Jena



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From: conversion.seo-at-gmail.com
Date: 05 Dec 2015 08:52:34 +0200
Subject: re: 40 PR8-9 contextual and dofollow

Contents Retrieved from Microscopy Listserver Archives
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[Apologize for kind of lengthiness]

Dear all,

I am seconding the first reply by Reinhard Rahel to this post from Stephane Nizet (Vienna, Austria).

Stephane, if you are in need for Austrian sources (specific EM-suppliers, knowing there are only VERY few!) I can provide their addresses and communication data if necessary. I know that often we had to order goods also by direct selling companies from Germany.

I would like to point to the problem of {legal purchase} of "radioactive" stuff in the European Community even/especially for electron microscopists and the fact that perhaps the quality of UO2Ac-powder will be a bit less than say 10 years ago (when there was introduced a limit of storage volumes of "radioactive natural (depleted) uranium" and biggest packages of 10g UO2Ac.powder were sold... rising problem in using the hygroscopic powder).

The only problem I had over the years (1% methanolic UO2Acetate + a drop of concentrated acetic acid {for better nuclear staining} as the originally traditional recipe told) was more/less rapid precipitation of yellow needles and also patchy deposit of (perhaps) U-(hydroxide?, UO4.4H2O?) despite careful handling, storing in critically cleaned glassware and shielding the solution from light anytime. This meant - making 25-50 ml of 1% methanolic UO2acetate stock = working solution - that sometimes I had to dispose of safely and compliant with serious legislation more than a quarter or sometimes a half of the ready-to-use solution.
This drawback/problem I think I was able to overcome by admixing enough concentrated acetic acid (analog to an "equilibrium function" in/during radiolysis and formation of precipitates when using U-nitrate solutions, there exists a paper in Nature 200,671-672, 1963, doi:10.1038/200671a0) which I was pointed to by a personal MSA-Listserver communication [2012-01-22] from/by our famous colleague John J. Bozzola [TEPLY&STULIK, 1963_Nature 200_Formation of Peroxidic Precipitates in Radiolysis of Uranyl Nitrate Ketone Solutions ] perhaps analog also valid for UOAc-solutions using acetic acid??]

If anyone would like to get the pdf of that 1963-Nature article (and / or the recipes as well as disposal strategy I used in staining ultrathins), please request it and I shall send it....

Ready to use UO2acetate-solutions as well as Lead containing (citrate Reynolds or Venable-Coggeshall-like) staining solutions are available from LEICA (because they sell these for use in their automated ULTROstainer (aqueous solutions of uranyl acetate and lead citrate (Leica Ultrostain I and II)...

The making of UO2Ac as well as Lead-Citrate solutions (especially the latter after Venable&Coggeshall) is not difficult provided you are allowed to make yourself (EU-legislation and radiation safety! you must have absolved successfully one or 2 special courses and written test to become a certified "radiation (safety) officer" or the like to be allowed to
i) store some grams of UO2-Acetate in your lab, and
ii) to handle UO2-acetate (or also -nitrate) crystals from the pack to make the solution yourself.


*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+*+

At this time I have to announce /to tell you that since 1st of December 2015 I am {retiree} with only a short limited time to act from my desk at } work {.

I would like to thank all of you and especially those who not only were getting to know me better but also respected me as person but with all my inadequacies, mistakes, faults and errors I certainly made sometimes.

All those colleagues already having replied earlier and wished me all the best in the future: Again Thank YOU so much for your courtesy and continuing friendship which I really appreciate.

I wish you all a pleasant and successful time in healthiness, always {radiating happiness} .

It was a pleasure and really an honor to having been in the number of long standing MSA-Listserver- {fellows}
and it might be that I shall/will be able to comment on one or the other matter in the future (if changing my delivery address for the MSA-listserver-messages will turn out to be successful).

God bless,
cordially yours

Wolfgang


OR Dr. phil. Wolfgang Muss*
Retired Head of EM-Lab
Univ. Institute of Pathology, SALK-LKH
(Salzburger Landeskliniken gemeinnuetzige GesmbH, Landeskrankenhaus = Federal State General Hosp.)
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===================================================================================================================
Von: nizets2-at-yahoo.com [mailto:nizets2-at-yahoo.com]
Gesendet: Freitag, 04. Dezember 2015 10:31
An: Muß Wolfgang
Betreff: [Microscopy] Ready-to-use contrasting solutions

---------------------------------------------------------------------------
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Dear colleagues,

Is it possible to purchase ready-to-use uranyle and lead salts for contrasting of ultrathin sections in TEM?
(this is for Austria so I would also need the name of the distributor in Austria)
Many thanks in advance.

Regards,
Stephane

==============================Original Headers==============================
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34, 41 -- From W.Muss-at-salk.at Fri Dec 4 06:01:04 2015
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34, 41 -- From: =?iso-8859-1?Q?Mu=DF_Wolfgang?= {W.Muss-at-salk.at}
34, 41 -- To: "'Microscopy-at-microscopy.com'" {Microscopy-at-microscopy.com}
34, 41 -- CC: "'nizets2-at-yahoo.com'" {nizets2-at-yahoo.com}
34, 41 -- Subject: [Microscopy] Re: Ready-to-use contrasting solutions AND SAYING
34, 41 -- "GOOD BYE"
34, 41 -- Thread-Topic: [Microscopy] Re: Ready-to-use contrasting solutions AND
34, 41 -- SAYING "GOOD BYE"
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From mike.sfsd4f564s6df45dsfy-at-gmail.com Fri Dec 4 09:57:21 2015
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From: microscopy.listserver-at-gmail.com
Date: Tue, 8 Dec 2015 08:22:20 -0600
Subject: [Microscopy] viaWWW: Looking for an older TEM.

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Email: m_raven-at-lifesci.ucsb.edu
Name: Mary Raven

Organization: UC, Santa Barbara

Title-Subject: [Filtered] Microscopy Facility Director at UCSB

Message: Dear Microscopy Group
I've moved on and UC, Santa Barbara needs a new Microscopy Facility Director

jobs.ucsb.edu/applicants/Central?quickFind=189767

Warm Regards
Mary



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From hanja07656515151sem-at-gmail.com Sun Dec 6 05:42:58 2015
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Email: kevinksl-at-att.net
Name: Kevin Smith

Organization: KSL

Title-Subject: [Filtered] TEM

Message:

I’m looking for a working TEM, or TEM that was known to be operational when disassemble. The
instrument will be used to preform bright field and SAED analysis on environmental samples.

I’m most familiar with JEOL, but have also worked with Philips instruments.



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From: microscopy.listserver-at-gmail.com
Date: Tue, 8 Dec 2015 08:30:25 -0600
Subject: [Microscopy] viaWWW:Senior/TEM service engineer opening

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Email: kun.li-at-kaust.edu.sa
Name: Kun Li

Organization: King Abdullah University of Science and Technology (KAUST)

Title-Subject: [Filtered] Senior/TEM service engineer opening

Message: The Imaging and Characterization Core Lab of KAUST is equipped with state-of-the-art
transmission electron microscopes, five of which are Titan. The EM facility is currently under a
3-year comprehensive service contract with FEI, and we are looking for an experienced senior/TEM
service engineer for the smooth operation of the EM suite.

The main duties of the candidate include
• Responsible for the overall maintenance of all the transmission electron microscopes in the
Imaging and Characterization Core Lab to ensure high equipment uptime.
• Conduct preventive maintenance of all the TEMs per predefined PM schedule.
• Conduct trouble-shooting and corrective maintenance of all the TEMs.
• Work with FEI factory service support team to speed up the trouble shooting and problem solving
process.
• Manage all the TEM spare parts and consumables.
• Responsible for the management and maintenance of the TEM Sample Preparation Lab.

KAUST provides very competitive package and good living environment (www.kaust.edu.sa). If you are
interested, please contact

kun.li-at-kaust.edu.sa
Imaging and Characterization Core Lab Director


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From: microscopy.listserver-at-gmail.com
Date: Tue, 8 Dec 2015 18:05:12 -0600
Subject: [Microscopy] viaWWW:Seeking Electron Microscopist

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Email: dbecker-at-bergen.org
Name: David Becker

Organization: Bergen County Technical Schools

Title-Subject: [Filtered] Seeking Electron Microscopist

Message: We are looking for someone with electron microscopy experience to join our Nano Structural
Imaging Laboratory, (NSIL), at Bergen Academies (Hackensack, NJ). We have TEM, SEM (Dual-Beam), EDX,
Confocal along with a wide range of sample prep equipment. If you, or someone you know has
experience in any, or all of the above we would be interested to hear from you\them.
There is a formal job description and application procedure at http://tinyurl.com/ov3zul6
Thank You for passing this along!


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From: Low.Bounce.Traffic-at-mg-style.cn
Date: 09 Dec 2015 03:25:38 +0200
Subject: Affordable Search Engines website traffic

Contents Retrieved from Microscopy Listserver Archives
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Email: jm-at-tamu.edu
Name: Ji Ma

Organization: Department of Materials Science and Engineering, Texas A&M University

Title-Subject: [Filtered] Position for research scientist in Transmission Electron Microscopy

Message: Research Scientist in Transmission Electron Microscopy
Department of Materials Science and Engineering
Texas A&M University

The Department of Materials Science and Engineering is seeking a research scientist with expertise
in Transmission Electron Microscopy (TEM), with special focus on high-resolution imaging and
diffraction techniques in crystalline solids. The research scientist will work with faculty and
students within the department to carry out TEM imaging and characterization of primarily on metals
and ceramics, interpret and analyze the results, and author or co-author scientific publications.
The candidate will also supervise and mentor students on the fundamentals of TEM technique, sample
preparation, and assist them in the interpretation of results. Qualified candidates will be involved
in proposal development and writing activities.

Qualification and Experience:
Ph.D. in materials science, metallurgy, or related fields is preferred.

Strong background and expertise in electron diffraction of crystalline solids and high resolution
imaging is required.

Experience in electron back-scattered diffraction (EBSD) and atom probe tomography (APT) is not
required but encouraged.

Strong record of scientific publications is required.

Applicants should submit a cover letter, curriculum vitae, and a list of three references (including
postal addresses, phone numbers and email addresses) at the following website:
https://www.tamengineeringjobs.com/postings/2200

For questions, please contact Dr. Ji Ma
E-mail: jm-at-tamu.edu


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From: microscopy.listserver-at-gmail.com
Date: Thu, 10 Dec 2015 06:54:01 -0600
Subject: [Microscopy] viaWWW:

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Email: Jasmijn.van.den.Borne-at-fei.com
Name: Jasmijn.van.den.Borne

Organization: FEI Company

Title-Subject: [Filtered] Job position with FEI in Shangai

Message: Product Marketing Engineer – Based in Shangai

The Mission

The market division within FEI provides solutions that add quantifiable economic value in
well-defined commercial applications encompassing process control, accelerated product design, and
application specific analysis. We develop and sell well defined solutions based on FEI's core
platforms and technologies. The Market Division is an entrepreneurial group within FEI heavily
engaged in new market development.

The Position

The Product Marketing Engineer is responsible for developing business plans, marketing strategy, and
forecasts for assigned product lines, maintaining a strong understanding of customer technical
requirements for existing and future products. This position identifies, evaluates, and recommends
marketing opportunities consistent with product line objectives.

Responsibilities and deliverables include:
•
Accompany sales engineers on customer visits to determine competitive strengths and weaknesses,
assist sales force in the promotion of FEI products at trade shows
• Provide feedback from existing customers, prospects, and the sales force to assist in the
definition of product configurations or enhancements that target specific markets or market segments
• Work with applications development to turn special customer requirements into saleable products or
features
• Develop sales support materials including brochures, applications notes, product data sheets,
competitive matrices, and technical presentations
• Develop and present technical papers at professional symposia, author technical articles for trade
press
• Develop and present training programs to the sales force to inform them of new products,
enhancements, or competitive issues
• Recommend, evaluate, and document FEI and third party accessories
• Work with demonstration lab staff to develop effective specialized demonstration techniques

The Requirements

This position is ideal for an experienced professional wanting to be involved with a dynamic team
and exposed to a constant variety of customer application areas.
The successful candidate will possess the following combination of education and experience:
• Typically requires a University degree in Material Science, Physics or a similar discipline,
advanced degree preferred
• Typically requires 10 years experience in a relevant technical environment
• Experience with TEMs.
• Ability to work in a team environment
• Excellent, enthusiastic, clear communication skills with a diverse audience is critical to the
success of this position
• Ability to travel both domestically as well as internationally and possession of a valid passport

If you are interested please apply via the following link:
https://global-fei.icims.com/jobs/5867/product-marketing-engineer/job
All qualified applicants will receive consideration for employment without regard to race, color,
religion, gender, national origin, age, disability, veteran status, marital status, pregnancy,
gender expression or identity, sexual orientation, or any other legally-protected status.


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From: microscopy.listserver-at-gmail.com
Date: Thu, 10 Dec 2015 07:51:35 -0600
Subject: [Microscopy] viaWWW:Job position with FEI in Shangai

Contents Retrieved from Microscopy Listserver Archives
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X-from: Jasmijn.van.den.Borne-at-fei.com

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Email: Jasmijn.van.den.Borne-at-fei.com
Name: Jasmijn.van.den.Borne

Organization: FEI Company

Title-Subject: [Filtered] Job position with FEI in Shangai

Message: Product Marketing Engineer – Based in Shangai

The Mission

The market division within FEI provides solutions that add quantifiable economic value in
well-defined commercial applications encompassing process control, accelerated product design, and
application specific analysis. We develop and sell well defined solutions based on FEI's core
platforms and technologies. The Market Division is an entrepreneurial group within FEI heavily
engaged in new market development.

The Position

The Product Marketing Engineer is responsible for developing business plans, marketing strategy, and
forecasts for assigned product lines, maintaining a strong understanding of customer technical
requirements for existing and future products. This position identifies, evaluates, and recommends
marketing opportunities consistent with product line objectives.

Responsibilities and deliverables include:
•
Accompany sales engineers on customer visits to determine competitive strengths and weaknesses,
assist sales force in the promotion of FEI products at trade shows
• Provide feedback from existing customers, prospects, and the sales force to assist in the
definition of product configurations or enhancements that target specific markets or market segments
• Work with applications development to turn special customer requirements into saleable products or
features
• Develop sales support materials including brochures, applications notes, product data sheets,
competitive matrices, and technical presentations
• Develop and present technical papers at professional symposia, author technical articles for trade
press
• Develop and present training programs to the sales force to inform them of new products,
enhancements, or competitive issues
• Recommend, evaluate, and document FEI and third party accessories
• Work with demonstration lab staff to develop effective specialized demonstration techniques

The Requirements

This position is ideal for an experienced professional wanting to be involved with a dynamic team
and exposed to a constant variety of customer application areas.
The successful candidate will possess the following combination of education and experience:
• Typically requires a University degree in Material Science, Physics or a similar discipline,
advanced degree preferred
• Typically requires 10 years experience in a relevant technical environment
• Experience with TEMs.
• Ability to work in a team environment
• Excellent, enthusiastic, clear communication skills with a diverse audience is critical to the
success of this position
• Ability to travel both domestically as well as internationally and possession of a valid passport

If you are interested please apply via the following link:
https://global-fei.icims.com/jobs/5867/product-marketing-engineer/job
All qualified applicants will receive consideration for employment without regard to race, color,
religion, gender, national origin, age, disability, veteran status, marital status, pregnancy,
gender expression or identity, sexual orientation, or any other legally-protected status.


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From: judy.cushing-at-lifesci.ucsb.edu
Date: Thu, 10 Dec 2015 10:45:14 -0600
Subject: [Microscopy] MICROSCOPY FACILITY DIRECTOR - Neuroscience Research Institute

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


MICROSCOPY FACILITY DIRECTOR - Neuroscience Research Institute

University of California, Santa Barbara


Under the direction of the Co-Director of the Neuroscience Research
Institute and the Departmental Chair of MCDB, serves as a general
resource on the use of microscopy toward achieving research goals of
UCSB personnel. Maintains core microscopes and histology preparatory
equipment and coordinates with the service representatives of the
microscope companies to maintain core instruments at design
specifications. In addition, assists in the preparation of grants by
providing technical expertise and providing technical training for
research personnel. In addition, serves an instructional role in
training individuals and participating in classes involving microscopy
and computational imaging.

Research Activity:
Participation in research is encouraged if all of the above duties are
fulfilled, after consultation with the advisory committee, the NRI
Co-Directors and the MCDB Chair.

The University of California is an Equal Opportunity/Affirmative Action
Employer, and all qualified applicants will receive consideration for
employment without regard to race, color, religion, sex, sexual
orientation, gender identity, national origin, disability status,
protected veteran status, or any other characteristic protected by law.
For primary consideration apply by 12/20/15, thereafter open until filled.

Apply online at https://jobs.ucsb.edu

Job #20150622

Must have a master's degree in a relevant field or equivalent
combination of education and experience. Have demonstrated experience
in microscopy and a strong interest in microscopy and its applications
to ongoing research projects.

Note: Fingerprinting required.


==============================Original Headers==============================
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From: gilpin-at-purdue.edu
Date: Thu, 10 Dec 2015 10:58:08 -0600
Subject: [Microscopy] quanta 3d FEG and Gatan Alto cryo system

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Hi Everyone,
I would like to talk to someone who has a quant 3DFEG with gatan alto cryo system on it. I took off the anti contaminator in the microscope chamber a while back and now can’t figure out how to get get it back in place. (my bad). I am hoping for an exchange of photos! Help!

Thanks



Chris

Christopher J. Gilpin Ph.D.
Director, Life Science Microscopy Facility
Purdue University
Whistler Hall of Agriculture Research, Room S052
170 S. University St
West Lafayette, IN 47907
765-494-7750
gilpin-at-purdue.edu


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From: conversion.seo-at-gmail.com
Date: 13 Dec 2015 00:42:23 +0200
Subject: 100 dofollow manual Directories Submission

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Email: mlibbee-at-lbl.gov
Name: Marissa Libbee

Organization: UCB/LBNL

Title-Subject: [Filtered] Joint faculty position UCB-LBNL in advanced materials characterization

Message: Sent on behalf of Dr. Andrew Minor

Dear MSA community,

I want to bring your attention to an open faculty position in the area of advanced materials
characterization at UC Berkeley and LBNL. The appointment will be at the level of assistant
professor, and will be a joint appointment between the Department of Materials Science and
Engineering at UC Berkeley and LBNL. We are looking for outstanding candidates that demonstrate the
potential to build a world-class research program in materials science that exploits and advances
techniques for materials characterization enabled by the unique combination of facilities at UC
Berkeley and LBNL, including the Molecular Foundry and the Advanced Light Source. We are
specifically encouraging all qualified women and candidates from underrepresented groups to apply.

Applications are due on January 15, 2016, and candidates can view the full advertisement and apply
directly at the following link: https://aprecruit.berkeley.edu/apply/JPF00862

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From: lkerr-at-mbl.edu
Date: Mon, 14 Dec 2015 10:35:04 -0600
Subject: [Microscopy] Bio Technical Position

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A full-time, temporary position is available for a Research Assistant 1 or 2 at the Marine Biological Laboratory. This position is currently funded for 1 year with the possibility of continued funding. The successful candidate will work with a team of scientists investigating the role of pupils in the eyes of animals. A BA or MA degree (or equivalent) in biological sciences is required. Experience in functional morphology, microscopy (light and electron microscopy, confocal microscopy), immunocytochemistry and histochemical techniques are necessary for this position.

More details can be found at:
https://mbl.simplehire.com/postings/3156



--
Louie Kerr | Director, Microscopy and Research Services | Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543
508-289-7273 | lkerr-at-mbl.edu | www.mbl.edu


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From: stefan.diller-at-t-online.de
Date: Mon, 14 Dec 2015 11:11:12 -0600
Subject: [Microscopy] Looking for a FEG-SEM to do high-res nanoflights

Contents Retrieved from Microscopy Listserver Archives
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Dear All,
I am looking for a large chamber FEG-SEM, like a Zeiss DSM 982 or a TESCAN MIRA, somewhere in Europe or even from abroad.

I am trying to evolve the quality of my nanoflight technique to "fly" around very small microstructures from a LaB6-driven SEM to
the FEG-SEM.
I would be very grateful if anything comes up in a financially achievable way...
Maybe there is a FEG-SEM somewhere you want to get rid of this year? ;-)

That`s what I can do now with my Philips-FEI 525 SEM flying around a T-cell (genetically engineered to fight lymphoblastic cancer):
https://vimeo.com/144734321
I am sure it would look unbelievable in the FEG-SEM in color ;-)


Best wishes,
Stefan


Find out more about "nanoflight" in the showreel of my website:
http://www.nanoflight.info/nanoflight2.html

--


-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.nanoflight.info
www.stefan-diller.com
www.electronmicroscopy.info
www.elektronenmikroskopie.info
www.zwillingsprojekt.de
www.assisi.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------


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12, 22 -- Subject: Looking for a FEG-SEM to do high-res nanoflights
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From: microscopy.listserver-at-gmail.com
Date: Mon, 14 Dec 2015 17:04:06 -0600
Subject: [Microscopy] viaWWW:Ion Mill/Polishing Systems

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Email: tomw-at-uidaho.edu
Name: Tom Williams

Organization: Univ of Idaho

Title-Subject: [Filtered] Ion Mill/Polishing Systems

Message: Greetings,

My lab is looking to purchase an ion mill/polishing system. I am looking at bench top models such
as the PIPS system from Gatan [or a similar device]. I need an estimate of the cost. I requested a
quotes but so far no vendor has replied and I need to submit the request soon.

My request to the group: a rough estimate of a purchase cost for a bench top ion mill/polisher
system such as Gatan PIPS II or similar device.

Thanks in advance.

Tom


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From: microscopy.listserver-at-gmail.com
Date: Mon, 14 Dec 2015 17:05:09 -0600
Subject: [Microscopy] viaWWW:recommendations for plasma cleaner

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Email: chrisbrantner-at-email.gwu.edu
Name: Chris Brantner

Organization: George Washington University Nanofabrication and Imaging Center

Title-Subject: [Filtered] recommendations for plasma cleaner

Message: Good afternoon microscopists,

I need to obtain a plasma cleaner for samples and holders for my new 200 kv TEM. I have never had
one in my previous positions so I am looking for recommendations about how to choose one.

Thanks

Chris

Dr. Christine A. Brantner
The George Washington University
Senior Research Scientist, Electron Microscopy
GW Nanofabrication and Imaging Center
800 22nd Street, NW
Science and Engineering Hall B2825
Washington, DC 20052
202-994-3219
chrisbrantner-at-email.gwu.edu

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From: baskin-at-bio.umass.edu
Date: Wed, 16 Dec 2015 08:25:26 -0600
Subject: [Microscopy] Re: viaWWW:recommendations for plasma cleaner

Contents Retrieved from Microscopy Listserver Archives
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Greetings,
We like the basic unit we got from Harrick. We do not
use the gas mixer attachment that is available for the unit. No
commerical interest, just a happy customer.
The web page is here:
harrickplasma.com/products/basic-plasma-cleaner

Good luck,
Tobias

On 12/14/15 6:23 PM, microscopy.listserver-at-gmail.com wrote:
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} Organization: George Washington University Nanofabrication and Imaging Center
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} Title-Subject: [Filtered] recommendations for plasma cleaner
}
} Message: Good afternoon microscopists,
}
} I need to obtain a plasma cleaner for samples and holders for my new 200 kv TEM. I have never had
} one in my previous positions so I am looking for recommendations about how to choose one.
}
} Thanks
}
} Chris
}
} Dr. Christine A. Brantner
} The George Washington University
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--
__ ___ ^ ___ ___ Tobias I. Baskin
/ \ / / \ / \ Professor
/ / / / \ \ \ Biology Department
/ __/ /__ /___ \ \ \__ University of Mass.
/ / / \ \ \ 611 N. Pleasant St.
/ / / \ \ \ Amherst, Massachusetts
/ /___ / \ \___/ \_____ USA 413-545-1533
www.bio.umass.edu/biology/baskin


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From: microscopy.listserver-at-gmail.com
Date: Wed, 16 Dec 2015 17:34:39 -0600
Subject: [Microscopy] viaWWW:Thanks for help on ion mill/polisher

Contents Retrieved from Microscopy Listserver Archives
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X-from: tomw-at-uidaho.edu

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Email: tomw-at-uidaho.edu
Name: Tom Williams

Organization: Univ of Idaho

Title-Subject: [Filtered] Thanks and Happy Holidays

Message: Greetings,

Wanted to take a moment to thank everyone who helped with my request for info on ion mill/polisher
systems. The response was overwhelming and very helpful. Saved me some hair pulling and teeth
gnashing.

Thanks again & Happy Holidays all around.

Tom


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Date: 17 Dec 2015 06:22:07 +0200
Subject: re: Stable Fanpage FB Likes

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Dear Colleagues:
We are in the process of upgrading our TEM camera system and are exploring several of the side mount camera systems that are currently available. Our current TEM has an AMT XR611 and has worked well over the years. We have been considering a camera upgrade for the scope and are looking at severall models, including the AMT BioSprint in a mid-mount position. One option that was presented to me was a Morada G3 TEM camera, but I am not very familiar with that company.

Any insight or information about the Morada Camera would be greatly appreciated!

Best Regards
Kevin

Kevin J. McCarthy, Ph.D.
Professor, Department of Pathology
LSU Health Sciences Center-Shreveport

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From: tbargar-at-unmc.edu
Date: Thu, 17 Dec 2015 14:34:52 -0600
Subject: [Microscopy] Percentage concentration of Reynold's Lead Citrate

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Dear Listers,

Does anyone know what the percentage concentration of Lead Citrate is in Reynolds Lead Citrate after the conversion of the two components?

Tom Bargar
UNMC
Electron Microscopy Core Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu


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From: tbargar-at-unmc.edu
Date: Thu, 17 Dec 2015 14:37:18 -0600
Subject: [Microscopy] I want to hear from users of Hummingbird Scientific TEM flow cell

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Dear Listers,

I would like to hear privately from anyone using Hummingbird Scientific's flow cell e-chips on their TEM.

Tom Bargar
UNMC
Electron Microscopy Core Facility
986395 Nebraska Medical Center
Omaha, NE 68198-6395
402-559-7347
tbargar-at-unmc.edu



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From: microscopy.listserver-at-gmail.com
Date: Thu, 17 Dec 2015 16:08:52 -0600
Subject: [Microscopy] viaWWW:Folded Paper microscope New Yorker

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Email: johnshields59-at-gmail.com
Name: John P Shields

Organization: University of Georgia

Title-Subject: [Filtered] Folded Paper microscope New Yorker

Message: An interesting article in the Dec. 2015 New Yorker about the Folded paper microscope.
Apologies if this is a repeat.
http://www.newyorker.com/magazine/2015/12/21/through-the-looking-glass-annals-of-science-carolyn-kormann


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From: microscopy.listserver-at-gmail.com
Date: Thu, 17 Dec 2015 16:10:31 -0600
Subject: [Microscopy] viaWWW:LM: linear measurement significant figures

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Email: mikroskop-at-gmail.com
Name: Jack

Title-Subject: [Filtered] linear measurement significant figures

Message: Hello Microscopists- I have a very fundamental micrometry question:

What is the valid number of significant figures that can be reported for linear measurements made
with a light microscope coupled with a digital camera?

This is an incredibly basic question, I feel a bit naĂŻve/ sheepish for asking it but I have not been
able to find suitable references that address this issue. Here are the experimental parameters/
conditions under which I am making measurements:

Nikon PLM with a 20x, 0.45 NA Plan Apo objective
The theoretical resolution of the objective is:
(0.61*lambda)/NA: (.61*0.550 um)/0.45= 0.746 um

The CCD camera attached to the microscope has a chip size that measures 2560 x 1920 pixels; each
pixel is 3.4 um (according to manufacturer’s specs).

Using a Edmund Optics Certified (NIST-traceable) stage micrometer (typical 10 um divisions)

Calibration: Draw line that starts at 0 and ends at 400 um. This equates to 2350 pixels, thus the
calibration is 0.1702 um/px or 5.8750 px/um.

Linear measurements and other shape parameters are calculated using typical image analysis software
return values with a huge number of decimal places (7+)... these all can't be valid!


Thank you very much for any information/ reference you can provide.

-Jack



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From: eikonika-at-otenet.gr
Date: Fri, 18 Dec 2015 10:05:37 -0600
Subject: [Microscopy] unexpected object in SEM

Contents Retrieved from Microscopy Listserver Archives
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Dear Friends
I would like to ask this wise List to help me identifying an object found in
an animal tissue biopsy -please click
http://www.eikonika.net/v2/downloads/stranger.jpg The object is apparently
biological, sized 20u and resembles to small pollen. The way it is mixed
with blood an mucus makes difficult to imagine that this object came as a
contaminant after fixation.
Thanks for your time!
yorgos


Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
*************************************




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7, 19 -- From: "Yorgos Nikas" {eikonika-at-otenet.gr}
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7, 19 -- Subject: unexpected object in SEM
7, 19 -- Date: Fri, 18 Dec 2015 18:05:10 +0200
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From: jehrman-at-mta.ca
Date: Fri, 18 Dec 2015 11:26:52 -0600
Subject: [Microscopy] Re: unexpected object in SEM

Contents Retrieved from Microscopy Listserver Archives
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It's a diatom. Lot similar to this, and many others, on our website:

http://www.mta.ca/dmf

This could have entered your specimen processing stream in a variety of
ways - water, some filter device, random dust, even airborne. They're
really everywhere.

Jim

On 18/12/2015 12:16 PM, eikonika-at-otenet.gr wrote:
}
}
} ----------------------------------------------------------------------------
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} Dear Friends
} I would like to ask this wise List to help me identifying an object found in
} an animal tissue biopsy -please click
} http://www.eikonika.net/v2/downloads/stranger.jpg The object is apparently
} biological, sized 20u and resembles to small pollen. The way it is mixed
} with blood an mucus makes difficult to imagine that this object came as a
} contaminant after fixation.
} Thanks for your time!
} yorgos
}
}
} Dr Yorgos Nikas
} Athens Innovative Microscopy
} Skra 36 Voula 16673 GREECE
}
} Tel/fax +30 210 8957677
} mobile +30 6945 107477
} www.eikonika.net www.aim.cat
} *************************************
}
}
}
}
} ==============================Original Headers==============================
} 7, 19 -- From eikonika-at-otenet.gr Fri Dec 18 10:05:25 2015
} 7, 19 -- Received: from sphinx.otenet.gr (smtp-out34.otenet.gr [83.235.69.34])
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} 7, 19 -- From: "Yorgos Nikas" {eikonika-at-otenet.gr}
} 7, 19 -- To: {microscopy-at-microscopy.com}
} 7, 19 -- Subject: unexpected object in SEM
} 7, 19 -- Date: Fri, 18 Dec 2015 18:05:10 +0200
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--

James M. Ehrman
Digital Microscopy Facility
Mount Allison University
63B York St.
Sackville, NB E4L 1G7
CANADA

phone: 506-364-2519
fax: 506-364-2505
email: jehrman-at-mta.ca
www: http://www.mta.ca/dmf

Books That Won't Change Your Life:

- Harry Potter and the Chamber of Commerce
- Gatsby
- Nineteen Eighty-Four-Year-Olds
- Where the Wild Things Aren't
- Realistic Expectations
- Lord of the Files
- A Tale of Two Suburbs
- Camaraderie on the Bounty
- A Brief History of Thyme
- No Ado About Nothing
- Paradise Temporarily Misplaced


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12, 21 -- From jehrman-at-mta.ca Fri Dec 18 11:26:49 2015
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From: ph2-at-sprynet.com
Date: Fri, 18 Dec 2015 11:57:44 -0600
Subject: [Microscopy] unexpected object in SEM

Contents Retrieved from Microscopy Listserver Archives
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It's a diatom.

You could spend some time, gather more morphological data and size and ID if
desired.

Tony

.........................................
Andrew Anthony "Tony" Havics, CIH, PE
Environmental, Health & Safety, Microscopy, Materials Science & Forensic
Engineering
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-----Original Message-----
X-from: eikonika-at-otenet.gr [mailto:eikonika-at-otenet.gr]
Sent: Friday, December 18, 2015 12:41 PM
To: ph2-at-sprynet.com

Dear Friends
I would like to ask this wise List to help me identifying an object found in
an animal tissue biopsy -please click
http://www.eikonika.net/v2/downloads/stranger.jpg The object is apparently
biological, sized 20u and resembles to small pollen. The way it is mixed
with blood an mucus makes difficult to imagine that this object came as a
contaminant after fixation.
Thanks for your time!
yorgos


Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
*************************************




==============================Original Headers==============================
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From: mdelann1-at-jhmi.edu
Date: Fri, 18 Dec 2015 12:51:47 -0600
Subject: [Microscopy] unexpected object in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dr. Nikas,
This looks like either a diatome or dinoflagellate. What is the tissue (I
see RBC's and microvilli or cilia). Was this animal underwater?
Let us know when you find out.

Sincerely,
Michael Delannoy
Johns Hopkins Microscope Facility

-----Original Message-----
X-from: eikonika-at-otenet.gr [mailto:eikonika-at-otenet.gr]
Sent: Friday, December 18, 2015 1:09 PM
To: delannoy-at-jhmi.edu

Dear Friends
I would like to ask this wise List to help me identifying an object found in
an animal tissue biopsy -please click
http://www.eikonika.net/v2/downloads/stranger.jpg The object is apparently
biological, sized 20u and resembles to small pollen. The way it is mixed
with blood an mucus makes difficult to imagine that this object came as a
contaminant after fixation.
Thanks for your time!
yorgos


Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
*************************************




==============================Original Headers==============================
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15, 24 -- From prvs=787bddc09=mdelann1-at-jhmi.edu Fri Dec 18 12:51:40 2015
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From: eikonika-at-otenet.gr
Date: Fri, 18 Dec 2015 13:35:12 -0600
Subject: [Microscopy] RE: unexpected object in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Thank you for your replies, all agreeing that the stranger is a small
diatom present in the water. So I can imagine how this was found mixed with
blood and mucus in my specimen (it is an endometrial biopsy from a lady's
womb with endometritis -ciliated and secretory cells and RBC are in the
scene): Small diatome-} penetrates water filters -} arrives into my
fixative-} binds to the tissue upon fixation-} visible on the sample.
Best regards
yorgos

Dear Friends
I would like to ask this wise List to help me identifying an object found in
an animal tissue biopsy -please click
http://www.eikonika.net/v2/downloads/stranger.jpg The object is apparently
biological, sized 20u and resembles to small pollen. The way it is mixed
with blood an mucus makes difficult to imagine that this object came as a
contaminant after fixation.
Thanks for your time!
yorgos


Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
*************************************




==============================Original Headers==============================
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From: wesaia-at-iastate.edu
Date: Fri, 18 Dec 2015 22:10:05 -0600
Subject: [Microscopy] viaWWW:LM: linear measurement significant figures

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Of course, most of the digits generated are going to be nonsense. It is good that you asked .

Certainly you should not quote values beyond the resolution of your system. That will be a convolution of your microscope resolution and your camera resolution. For most current cameras, I would suppose that the microscope is the largest portion. That seems to be your case given your figures.

There is also the bigger, practical question of operator reproducibility. How consistently can you measure your 400-um micrometer? If you get a standard deviation of 4 um on your micrometer, then you should limit yourself to three digits. Repeat the experiment at various magnifications and see what you get. I expect you will find the operator is the limiting factor.

Warren Straszheim

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Sent: Thursday, December 17, 2015 4:33 PM

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Email: mikroskop-at-gmail.com
Name: Jack

Title-Subject: [Filtered] linear measurement significant figures

Message: Hello Microscopists- I have a very fundamental micrometry question:

What is the valid number of significant figures that can be reported for linear measurements made with a light microscope coupled with a digital camera?

This is an incredibly basic question, I feel a bit naive/ sheepish for asking it but I have not been able to find suitable references that address this issue. Here are the experimental parameters/ conditions under which I am making measurements:

Nikon PLM with a 20x, 0.45 NA Plan Apo objective The theoretical resolution of the objective is:
(0.61*lambda)/NA: (.61*0.550 um)/0.45= 0.746 um

The CCD camera attached to the microscope has a chip size that measures 2560 x 1920 pixels; each pixel is 3.4 um (according to manufacturerÂ's specs).

Using a Edmund Optics Certified (NIST-traceable) stage micrometer (typical 10 um divisions)

Calibration: Draw line that starts at 0 and ends at 400 um. This equates to 2350 pixels, thus the calibration is 0.1702 um/px or 5.8750 px/um.

Linear measurements and other shape parameters are calculated using typical image analysis software return values with a huge number of decimal places (7+)... these all can't be valid!


Thank you very much for any information/ reference you can provide.

-Jack

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From: oshel1pe-at-cmich.edu
Date: Sat, 19 Dec 2015 11:52:52 -0600
Subject: [Microscopy] RE: unexpected object in SEM

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Yorgos,

If you have any filters in your water lines for the water you or the sample provider use to make solutions, check them for diatomaceous earth filters. Fairly common, and another source of diatoms as contaminants.

Phil

Philip Oshel
Microscopy Facility Supervisor
Biology Department
024C Brooks Hall
Central Michigan University
Mt. Pleasant, MI 48859
(989) 774-3576

________________________________________
X-from: eikonika-at-otenet.gr [eikonika-at-otenet.gr]
Sent: Friday, December 18, 2015 11:01 PM
To: Oshel, Philip Eugene

Thank you for your replies, all agreeing that the stranger is a small
diatom present in the water. So I can imagine how this was found mixed with
blood and mucus in my specimen (it is an endometrial biopsy from a lady's
womb with endometritis -ciliated and secretory cells and RBC are in the
scene): Small diatome-} penetrates water filters -} arrives into my
fixative-} binds to the tissue upon fixation-} visible on the sample.
Best regards
yorgos

Dear Friends
I would like to ask this wise List to help me identifying an object found in
an animal tissue biopsy -please click
http://www.eikonika.net/v2/downloads/stranger.jpg The object is apparently
biological, sized 20u and resembles to small pollen. The way it is mixed
with blood an mucus makes difficult to imagine that this object came as a
contaminant after fixation.
Thanks for your time!
yorgos


Dr Yorgos Nikas
Athens Innovative Microscopy
Skra 36 Voula 16673 GREECE

Tel/fax +30 210 8957677
mobile +30 6945 107477
www.eikonika.net www.aim.cat
*************************************




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From: wesaia-at-iastate.edu
Date: Sun, 20 Dec 2015 22:11:17 -0600
Subject: [Microscopy] Out-of-office flood

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

RE: viaWWW:LM: linear measurement significant figures

I think I may have set a new personal record - 60 out-of-office automatic replies. I suppose I should have expected that as the holidays approach. I might have done even better by waiting until next week.

16 responses came from vendors, some of who I actually deal with. The others let me know anyway. ;)
31 responses came from various labs. I have dealings with none of them, although I recognized many respected institutions.
13 more came from organizations I could not recognize as vendors or labs. Of course, that means I have dealings with none of them.

The list FAQs state "Do not set your Email program to deliver "out of the office/vacation" messages. If you will be gone, you should unsubscribe from the list and subscribe again when you return."
Please consider it, especially vendors. I know you would like to keep your name in front of your potential customers. However, it seems counterproductive when it is by way of one of these messages. Besides, it seems that some of you are always out of the office and on the road.

Regardless, I thank the posters from the past year. I appreciate you sharing of your time and wisdom.

And thank you, Nestor, for keeping this forum going.

Merry Christmas and a Happy New Year.

Warren


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From: wesaia-at-iastate.edu
Date: Tue, 22 Dec 2015 18:05:31 -0600
Subject: [Microscopy] Please do not flood our mailboxes

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

RE: viaWWW:LM: linear measurement significant figures

I think I may have set a new personal record - 60 out-of-office automatic replies. I suppose I should have expected that as the holidays approach. I might have done even better by waiting until next week.

16 responses came from vendors, some of who I actually deal with. The others let me know anyway. ;)
31 responses came from various labs. I have dealings with none of them, although I recognized many respected institutions.
13 more came from organizations I could not recognize as vendors or labs. Of course, that means I have dealings with none of them.

The list FAQs state "Do not set your Email program to deliver "out of the office/vacation" messages. If you will be gone, you should unsubscribe from the list and subscribe again when you return."
Please consider it, especially vendors. I know you would like to keep your name in front of your potential customers. However, it seems counterproductive when it is by way of one of these messages. Besides, it seems that some of you are always out of the office and on the road.

Regardless, I thank the posters from the past year. I appreciate you sharing of your time and wisdom.

And thank you, Nestor, for keeping this forum going.

Merry Christmas and a Happy New Year.

Warren


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==============================End of - Headers==============================




From: apamatos-at-gmail.com
Date: Thu, 24 Dec 2015 07:43:53 -0600
Subject: [Microscopy] SEM - Old (functional) EDX detector needed

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Colleagues

My EDX detector window for SEM is broken and I had problems with
transport dammage when purchasing similar equipment from other
countries. Does anyone in Spain or Portugal has a spare unused detector
(LN2 cooled is OK) that can be acquired at low or no cost? I would be
able to go somewhere in these countries and transport it under proper
conditions.

Please contact me to apamatos-at-gmail.com

Marry Christmas and Happy New Year
A.P. Alves de Matos
Cmicros - Egas Moniz Centre for Histopathology and Electron Microscopy,
Portugal


==============================Original Headers==============================
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5, 34 -- Subject: SEM - Old (functional) EDX detector needed
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From: apamatos-at-gmail.com
Date: Thu, 24 Dec 2015 08:47:29 -0600
Subject: [Microscopy] International Congress of the Society for Ultrastructural Pathology -

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html



DearColleagues and Friends,

The Society for Ultrastructural Pathology is organizing its XVIII
Congress in Lisbon, Portugal from July 11 to 15, 2016.
The program setup is now developing rapidly and you can check the
overall schedule and further information at
http://congress.ultrapathXVIII.org/program

The Congress will be preceeded by an introductory course on
Ultrastructural Pathology organized by our senior and experienced
Colleague Joseph Lloreta-Trull, from Hospital del Mar in Barcelona.
Please check the proposed programme at
http://congress.ultrapathXVIII.org/course.

This Congress will focus primarily on ultrastructural diagnosis. A
comprehensive programme of invited speakers and submitted presentations
will cover this topic. Sessions will be dedicated to the main diagnostic
areas for which electron microscopy is important. Also more fundamental
research and new technical advances, important for Ultrastructural
Pathology as a whole, will be covered. New information will be posted
frequently on the programme page as soon as it becomes confirmed.

The Congress and its associated Course is important for a wide range of
participants, from medical doctors and Pathologists to research
scientists dealing with Histology, Histopathology, Cell Biology etc. and
also, most importantly, technicians active in these areas.**

Therefore it is our great pleasure to invite you to join us at
UltrapathXVIII in the pleasant, friendly and inexpensive environment of
Lisbon, and in the superb facilities of the Gulbenkian Foundation, where
the Congress will be held.

Please help us to get the word out about this Congress by downloading
the brochure from the link below and sending it to your colleagues.

http://microventures.co/UltrapathXVIII/images/Brochure.pdf
http://microventures.co/UltrapathXVIII/images/Full_Brochure.pdf

On behalf of the organizing committee, I am looking forward to welcoming
you to Lisbon in June 2016.
The registration page is now on line. Please register at
http://congress.ultrapathXVIII.org/registration

With kind regards,

From the Organizing Committee,

A.P. Alves de Matos
Chair of UltrapathXVIII







==============================Original Headers==============================
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20, 38 -- Mon, 21 Dec 2015 14:57:37 -0800 (PST)
20, 38 -- Subject: International Congress of the Society for Ultrastructural Pathology -
20, 38 -- UltrapathXVIII
20, 38 -- References: {567734F5.1030505-at-gmail.com}
20, 38 -- To: Microscopy-at-microscopy.com
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==============================End of - Headers==============================




From: apamatos-at-gmail.com
Date: Thu, 24 Dec 2015 08:57:10 -0600
Subject: [Microscopy] International Congress of the Society for Ultrastructural Pathology -

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Dear Colleagues and Friends,

The Society for Ultrastructural Pathology is organizing its XVIII
Congress in Lisbon, Portugal from July 11 to 15, 2016.
The program setup is now developing rapidly and you can check the
overall schedule and further information at
http://congress.ultrapathXVIII.org/program

The Congress will be preceeded by an introductory course on
Ultrastructural Pathology organized by our senior and experienced
Colleague Joseph Lloreta-Trull, from Hospital del Mar in Barcelona.
Please check the proposed programme at
http://congress.ultrapathXVIII.org/course.

This Congress will focus primarily on ultrastructural diagnosis. A
comprehensive programme of invited speakers and submitted
presentations will cover this topic. Sessions will be dedicated to the
main diagnostic areas for which electron microscopy is important. Also
more fundamental research and new technical advances, important for
Ultrastructural Pathology as a whole, will be covered. New
information will be posted frequently on the programme page as soon as
it becomes confirmed.

The Congress and its associated Course is important for a wide range
of participants, from medical doctors and Pathologists to research
scientists dealing with Histology, Histopathology, Cell Biology etc.
and also, most importantly, technicians active in these areas.**

Therefore it is our great pleasure to invite you to join us at
UltrapathXVIII in the pleasant, friendly and inexpensive environment
of Lisbon, and in the superb facilities of the Gulbenkian Foundation,
where the Congress will be held.

Please help us to get the word out about this Congress by downloading
the brochure from the link below and sending it to your colleagues.

http://microventures.co/UltrapathXVIII/images/Brochure.pdf
http://microventures.co/UltrapathXVIII/images/Full_Brochure.pdf


On behalf of the organizing committee, I am looking forward to
welcoming you to Lisbon in June 2016.
The registration page is now on line. Please register at
http://congress.ultrapathXVIII.org/registration

With kind regards,

From the Organizing Committee,

A.P. Alves de Matos
Chair of UltrapathXVIII




==============================Original Headers==============================
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17, 38 -- UltrapathXVIII
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From: apamatos-at-gmail.com
Date: Thu, 24 Dec 2015 09:31:51 -0600
Subject: [Microscopy] International Congress of the Society for Ultrastructural Pathology - UltrapathXVIII

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html

Dear Colleagues and Friends,

The Society for Ultrastructural Pathology is organizing its XVIII
Congress in Lisbon, Portugal from July 11 to 15, 2016.
The program setup is now developing rapidly and you can check the
overall schedule and further information at
http://congress.ultrapathXVIII.org/program

The Congress will be preceeded by an introductory course on
Ultrastructural Pathology organized by our senior and experienced
Colleague Joseph Lloreta-Trull, from Hospital del Mar in Barcelona.
Please check the proposed programme at
http://congress.ultrapathXVIII.org/course.

This Congress will focus primarily on ultrastructural diagnosis. A
comprehensive programme of invited speakers and submitted
presentations will cover this topic. Sessions will be dedicated to the
main diagnostic areas for which electron microscopy is important. Also
more fundamental research and new technical advances, important for
Ultrastructural Pathology as a whole, will be covered. New
information will be posted frequently on the programme page as soon as
it becomes confirmed.

The Congress and its associated Course is important for a wide range
of participants, from medical doctors and Pathologists to research
scientists dealing with Histology, Histopathology, Cell Biology etc.
and also, most importantly, technicians active in these areas.**

Therefore it is our great pleasure to invite you to join us at
UltrapathXVIII in the pleasant, friendly and inexpensive environment
of Lisbon, and in the superb facilities of the Gulbenkian Foundation,
where the Congress will be held.

Please help us to get the word out about this Congress by downloading
the brochure from the link below and sending it to your colleagues.

http://microventures.co/UltrapathXVIII/images/Brochure.pdf
http://microventures.co/UltrapathXVIII/images/Full_Brochure.pdf


On behalf of the organizing committee, I am looking forward to
welcoming you to Lisbon in June 2016.
The registration page is now on line. Please register at
http://congress.ultrapathXVIII.org/registration

With kind regards,

X-from the Organizing Committee,

A.P. Alves de Matos
Chair of UltrapathXVIII

==============================Original Headers==============================
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From: John.Mardinly-at-asu.edu
Date: Mon, 28 Dec 2015 14:30:44 -0600
Subject: [Microscopy] EpoTek equivalent to Gatan G2

Contents Retrieved from Microscopy Listserver Archives
http://www.microscopylistserver.com/MicroscopyListserver/MicroscopyArchives.html


Does anyone out there know the EpoTek equivalent to Gatan G2 epoxy?

John Mardinly,  ASU


==============================Original Headers==============================
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4, 36 -- Subject: EpoTek equivalent to Gatan G2
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From: microscopy.listserver-at-gmail.com
Date: Mon, 28 Dec 2015 16:56:55 -0600
Subject: [Microscopy] viaWWW:RPC Error message in Gatan Digital micrograph.

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Email: ravi.thakkar369-at-gmail.com
Name: Ravi Thakkar

Organization: KSU

Title-Subject: [Filtered] Error message in Gatan Digital micrograph.

Message: Hi,
Wishing you all a merry Christmas and happy new year.
I am getting an error message "RPC server is unavailable" while acquiring image on digital micrograph.
How to correct this error.?


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From: stefan.diller-at-t-online.de
Date: Tue, 29 Dec 2015 08:17:47 -0600
Subject: [Microscopy] Jeol 840 manuals

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Dear All,

anybody out who does have a Jeol 840 user manual and maybe also a service manual in PDF?
I would appreciate it very much.

Best wishes for the upcoming 2016
Stefan

--


-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
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++49-931-7848701 Fax
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Websites:
www.nanoflight.info
www.stefan-diller.com
www.electronmicroscopy.info
www.elektronenmikroskopie.info
www.zwillingsprojekt.de
www.assisi.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------


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From: microscopy.listserver-at-gmail.com
Date: Wed, 30 Dec 2015 06:34:25 -0600
Subject: [Microscopy] viaWWW:EM books to donate

Contents Retrieved from Microscopy Listserver Archives
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Dear All,
thanks; I got the manuals.
No more need.

Best wishes for 2016
Stefan

-----------------------------------------------------
Stefan Diller - Scientific Photography
Arndtstrasse 22
D - 97072 Wuerzburg Germany
++49-931-7848700 Phone
++49-931-7848701 Fax
++49-175-7177051 Mobile

Websites:
www.nanoflight.info
www.stefan-diller.com
www.electronmicroscopy.info
www.elektronenmikroskopie.info
www.zwillingsprojekt.de
www.assisi.de
Anfahrt: http://Mail.map24.com/Stefan.Diller
-----------------------------------------------------

Am 29.12.15 um 15:27 schrieb stefan.diller-at-t-online.de:
} ----------------------------------------------------------------------------
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} Dear All,
}
} anybody out who does have a Jeol 840 user manual and maybe also a service manual in PDF?
} I would appreciate it very much.
}
} Best wishes for the upcoming 2016
} Stefan
}


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From ohn.bullocknewssz-at-gmail.com Tue Dec 29 15:27:42 2015
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Name: Tori Harrington

Organization: none

Title-Subject: [Filtered] books to donate

Message: I have 3 books of TEM ultrastructure of cells and tissues. I will be happy to send them
to anyone who wants them for the price of postage.

"A Study Atlas of Electron Micrographs" Judy M. Strum 1992, 3rd edition

"Fine Structure of Cells and Tissues" Porter and Bonneville, 4th edition

"Functional Ultrastructure, Atlas of Tissue Biology and Pathology" Pavelka and Roth, 3rd edition



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From: microscopy.listserver-at-gmail.com
Date: Wed, 30 Dec 2015 06:35:17 -0600
Subject: [Microscopy] viaWWW:Preparation of beach coral for SEM?

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Email: bryan-at-systap.com
Name: Bryan Thompson

Title-Subject: [Filtered] Preparation of beach coral for SEM?

Message: Hello,

I brought back a piece of coral from a beach recently. I am wondering how
people would suggest drying out this sample. The sample was "found" on the
beach (wet, wave tossed). My goal is uncoated observation in SEM.

I could:
- bake it
- leave it in a vacuum chamber
- run it through a CPD.

CPD seems like overkill given that this was a loose / dead sample, not a
piece of living coral.

Thanks,
Bryan

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From: DusevichV-at-umkc.edu
Date: Wed, 30 Dec 2015 11:10:10 -0600
Subject: [Microscopy] viaWWW:Preparation of beach coral for SEM?

Contents Retrieved from Microscopy Listserver Archives
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You can try to treat it with a bleach for 15 min to get rid of unwanted organic stuff, wash and air dry it. I do quite often for bone and teeth.
Good luck.
Vladimir

Vladimir M. Dusevich, Ph.D.
Electron Microscope Lab Director
(816) 235-2072
371 School of Dentistry
650 E. 25th Street
Kansas City, MO 64108-2784

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Email: bryan-at-systap.com
Name: Bryan Thompson

Title-Subject: [Filtered] Preparation of beach coral for SEM?

Message: Hello,

I brought back a piece of coral from a beach recently. I am wondering how people would suggest drying out this sample. The sample was "found" on the beach (wet, wave tossed). My goal is uncoated observation in SEM.

I could:
- bake it
- leave it in a vacuum chamber
- run it through a CPD.

CPD seems like overkill given that this was a loose / dead sample, not a piece of living coral.

Thanks,
Bryan

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From: BENJAMIN :      newsletter-at-host2015.lw-china-cdn.com
Date: Fri, 01 Jan 2016 20:26:24 +0200
Subject: re: whitehat SEO for my website

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